Acknowledgments

The authors are grateful to the researchers who have deposited these datasets in public libraries allowing us to include their data in our tools.

Encode data

Data downloaded from the ENCODE project.

OrganismGEO dataset
HumanGSE19090, GSE15805
MouseGSE15998

Affymetrix data

Data downloaded from the Affymetrix website.

OrganismDataset
HumanLink
MouseLink

CLIP datasets

CLIP datasets downloaded from various sources including GEO, ArrayExpress, and UCSC.

OrganismSplicing factorDatasetContributorsPublication
HumanFOX2UCSC TrackYeo et al.Link
HumanFUSGSE40651Yeo and ClevelandLink
HumanHnRNP A1GSE34993Huelga and YeoLink
HumanHnRNP A2B1GSE34993Huelga and YeoLink
HumanHNRNP CE-MTAB-1371Zarnack et al.Link
HumanHnRNP FGSE34993Huelga and YeoLink
HumanhnRNP H1GSE23694Katz et al.Link
HumanhnRNP MGSE34993Huelga and YeoLink
HumanhnRNP UGSE34993Huelga and YeoLink
HumanhnRNP UGSE34491Xiao et al.Link
HumanHuRGSE29943Lebedeva et al.Link
HumanHuRGSE29780MukherjeeLink
HumanPTBGSE19323Xue et al.Link
HumanTIA1E-MTAB-432WangLink
HumanTIAL1E-MTAB-432WangLink
MouseFUSGSE40651Yeo and ClevelandLink
MouseTDP43GSE40651Yeo and ClevelandLink
MouseTRA2UCSC TrackGrellscheid et al.Link

Splicing factor siRNAs

siRNA datasets downloaded from GEO.

siRNA targetDatasetContributorsPublication
ESRPGSE17468Warzecha et al.Link
HNRNP HGSE12386XiaoLink
HNRNP LGSE8945Hung and BindereifLink
HuRGSE29780MukherjeeLink
PTBGSE23514Llorian et al.Link
RBM4GSE32933Markus et al.-