FasterDB identifier: 11890 - UCMA (C10orf49)
upper zone of growth plate and cartilage matrix associated
| Gene |  |
||
|---|---|---|---|
| Symbol | UCMA | ||
| Synonyms | C10orf49 | ||
| Description | upper zone of growth plate and cartilage matrix associated | ||
| EnsEMBL link | ENSG00000165623 | ||
| Chromosome | 10 - reverse strand | ||
| Chromosomal location (UCSC link) |
13263769 - 13276331 (12563bp) | ||
| Sequence | sequence | ||
| Associated transcripts | BC018068 NM_145314 |
| Alternative 3' splice site (acceptor) | |
|||
|---|---|---|---|---|
| Identifier | Position | Distance (bp) | Transcript | |
| Alternative 5' splice sites (donor) | |
|||
|---|---|---|---|---|
| Identifier | Position | Distance (bp) | Transcript | |
| Intron retentions | |
|
|---|---|---|
| Identifier | Position | Transcript |
| Exon deletions |  |
|||
|---|---|---|---|---|
| Identifier | Position | Transcript | ||
| No data | ||||
| Transcription start sites | |
|||
|---|---|---|---|---|
| Identifier | Position | Gene coordinates | Chromosomal coordinates | Transcript |
| P1 | 1 | 1 | 13276331 | BC018068 NM_145314 |
| Polyadenylation | |
||||||
|---|---|---|---|---|---|---|---|
| Identifier | Position | Gene coordinates of cleavage site | Chromosomal coordinates of cleavage site | Pattern | PolyA tail | Accession number | Type |
| PA1 | 5 | 12563 | 13263769 | AATAAA | yes | BC018068 | Cdna |
| PA2 | 5 | 12563 | 13263769 | AATAAA | yes | NM_145314 | Cdna |
| Exon skipping | |
|
|---|---|---|
| Identifier | Position | Transcript |
| No data | ||
| Splice site strength | |
||||
|---|---|---|---|---|---|
| Identifier | Site | Exon | Strength | Alternative | Sequence |
| S1 | 5' (donor) | 1 | 7.43 | no | CTAgtgagt |
| S2 | 5' (donor) | 2 | 10.47 | no | AAGgtgagt |
| S3 | 3' (acceptor) | 2 | 9.84 | no | tctgtgcccttgtcctgcagTGC |
| S4 | 5' (donor) | 3 | 9.33 | no | ATGgtaagg |
| S5 | 3' (acceptor) | 3 | 7.33 | no | aggcctctcccgggtttcagATG |
| S6 | 5' (donor) | 4 | 9.48 | no | ATGgtaaga |
| S7 | 3' (acceptor) | 4 | 9.88 | no | tgcttcttttcctttcacagTGG |
| S8 | 3' (acceptor) | 5 | 11.11 | no | gctttgtctttcctccccagAGC |
| Conserved exons | |
|
|---|---|---|
| Gene identifier mouse | Position human | Position mouse |
| 9346 | 1 | 1 |
| 9346 | 2 | 2 |
| 9346 | 3 | 3 |
| 9346 | 4 | 4 |
| Report | |
|---|---|
| Exon | Number of supporting transcripts |
| Transcription initiation & first exon(s) | |
| 1 | 1 |
| Transcription termination & last exon(s) | |
| 5 | 2 |
| Splicing factors | |
|||
|---|---|---|---|---|
| Splicing factor | Exon array | CLIP data | Exon position | |
| CELF1 (CUG-BP) | ||||
| DAZAP1 | ||||
| ELAVL1 (HuR) | Yes | Yes | ||
| ESRP1/2 (ESRP) | Yes | |||
| FUS | Yes | |||
| HNRNPA1 | Yes | |||
| HNRNPA2B1 | Yes | |||
| HNRNPAB | ||||
| HNRNPC | Yes | |||
| HNRNPF/HNRNPH1 | Yes | Yes | ||
| HNRNPL | Yes | |||
| HNRNPL_2 | ||||
| HNRNPM | Yes | |||
| HNRNPU | Yes | |||
| MBNL | ||||
| NOVA1 | ||||
| PTBP1/2 (PTB) | Yes | Yes | ||
| QKI | ||||
| RBFOX2 (FOX2) | Yes | |||
| RBM4 | Yes | |||
| SFRS3 (SRP20) | ||||
| SFRS6 (SRP55) | ||||
| SFRS7 (9G8) | ||||
| SRSF1 (SF2ASF) | ||||
| SRSF2 (SC35) | ||||
| SRSF5 (SRP40) | ||||
| TDP43 | ||||
| TIA1/TIAL1 | Yes | |||
| TRA2A | ||||
| TRA2B | ||||
| YBX1 (YB1) | ||||
| Expression | |
||
|---|---|---|---|
| Exon position | Tissues | Cell lines | Cancer cell lines |
| 1 | Expression | Expression | Expression |
| 2 | Expression | Expression | Expression |
| 3 | Expression | Expression | Expression |
| 4 | Expression | Expression | Expression |
| 5 | Expression | Expression | Expression |
| Exon-Intron | |
|||||
|---|---|---|---|---|---|---|
| Position | Type | Gene coordinates | Chromosomal coordinates | Length | Sequence | Features |
| 1 | Exon | 1 - 131 | 13276201-13276331 | 131 | sequence | download |
| 1 | Intron | 132 - 531 | 13275801-13276200 | 400 | sequence | - |
| 2 | Exon | 532 - 597 | 13275735-13275800 | 66 | sequence | download |
| 2 | Intron | 598 - 698 | 13275634-13275734 | 101 | sequence | - |
| 3 | Exon | 699 - 794 | 13275538-13275633 | 96 | sequence | download |
| 3 | Intron | 795 - 4622 | 13271710-13275537 | 3828 | sequence | - |
| 4 | Exon | 4623 - 4721 | 13271611-13271709 | 99 | sequence | download |
| 4 | Intron | 4722 - 12131 | 13264201-13271610 | 7410 | sequence | - |
| 5 | Exon | 12132 - 12563 | 13263769-13264200 | 432 | sequence | download |
|
5' untranslated regions
|
|
|---|---|
| UTR 1 | |
| Supporting GenBank accession identifers |
BC018068 NM_145314 |
| Length | 73 |
| Number of ATGs in frame | 0 |
| Total number of ATGs | 0 |
| Number of GTGs in frame | 1 |
| Total number of GTGs | 4 |
| Number of CTGs in frame | 1 |
| Total number of CTGs | 2 |
| Number of micro ORFs in frame | 0 |
| Total number of micro ORFs | 0 |
| GC percentage | 66 |
| Number of pyrimidine tracks | 1 |
|
3' untranslated regions
|
|
|---|---|
| UTR 1 | |
| Supporting GenBank accession identifers |
BC018068 NM_145314 |
| Length | 334 |
| Number of ATGs in frame | 1 |
| Total number of ATGs | 4 |
| Number of GTGs in frame | 3 |
| Total number of GTGs | 8 |
| Number of CTGs in frame | 1 |
| Total number of CTGs | 7 |
| GC percentage | 51 |
| Number of pyrimidine tracks | 4 |
| miRNAs | |
|||
|---|---|---|---|---|
| Identifier | Name | Gene coordinates | Chromosomal coordinates | Prediction algorithm |
| No data | ||||
| Protein features | |
||||
|---|---|---|---|---|---|
| Category | Feature identifier | Feature name | Exons | Start on gene | End on gene |
| Localization | EXONT:000019 | Signal_peptide | 1,2 | 74 | 551 |
| Localization | EXONT:000064 | Nuclear_localization_signal | 3,4 | 761 | 4645 |
| Structure | EXONT:000074 | Intrinsically_unstructured_polypeptide_region | 2,3,4 | 564 | 4633 |
| Structure | EXONT:000035 | Coiled_coil | 4,5 | 4670 | 12178 |
| Structure | EXONT:000074 | Intrinsically_unstructured_polypeptide_region | 4,5 | 4691 | 12157 |
Please wait while loading ...