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Previous gene FasterDB identifier: 9346 - Ucma (ENSMUSG00000026668) upper zone of growth plate and cartilage matrix associated Gene Next gene
Gene Close
Symbol Ucma
Synonyms ENSMUSG00000026668
Description upper zone of growth plate and cartilage matrix associated Gene
EnsEMBL link ENSMUSG00000026668
Chromosome 2 - forward strand
Chromosomal location
(UCSC link)		 4897168 - 4906794 (9627bp)
Sequence sequence
Associated transcripts EU368184 NM_001165932 NM_026754 NM_001113558 EF529510 AK003750 FJ217397 FJ217398 FJ217399 FJ217400 BC115608 BC115609
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 4897168 EU368184
NM_001165932
NM_026754
NM_001113558
P2 1 59 4897226 AK003750
Protein prediction Close
 Transcript name   Sequence 
EU368184 sequence
NM_001165932 sequence
NM_026754 sequence
NM_001113558 sequence
EF529510 sequence
AK003750 sequence
FJ217397 sequence
FJ217398 sequence
FJ217399 sequence
FJ217400 sequence
BC115608 sequence
BC115609 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 5 9627 4906794 AATAAA no NM_001165932 Cdna
PA2 5 9627 4906794 AATAAA no NM_026754 Cdna
PA3 5 9627 4906794 AATAAA no NM_001113558 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 2 NM_026754
AK003750
FJ217398
FJ217400
ES2 4 NM_001165932
FJ217397
FJ217398
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 5.8 no GTAgtgagt
S2 5' (donor) 2 10.47 no AAGgtgagt
S3 3' (acceptor) 2 8.95 no ccttgtgccttaccctacagTGC
S4 5' (donor) 3 9.33 no ATGgtaagg
S5 3' (acceptor) 3 8.54 no gagcccttttctggtttcagGTG
S6 5' (donor) 4 9.26 no ATGgtaagc
S7 3' (acceptor) 4 5.77 no gagcaactttgcgttcacagCGG
S8 3' (acceptor) 5 9.26 no ttttatctttcccgcctcagAGC
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
11890 1 1
11890 2 2
11890 3 3
11890 4 4
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 2
 Transcription termination & last exon(s) 
5 3
 Exon skipping 
2 4
4 3
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
3 Expression Expression
4 Expression Expression
5 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 188 4897168 - 4897355 188 sequence download
1 Intron 189 - 533 4897356 - 4897700 345 sequence -
2 Exon 534 - 599 4897701 - 4897766 66 sequence download
2 Intron 600 - 688 4897767 - 4897855 89 sequence -
3 Exon 689 - 784 4897856 - 4897951 96 sequence download
3 Intron 785 - 5116 4897952 - 4902283 4332 sequence -
4 Exon 5117 - 5215 4902284 - 4902382 99 sequence download
4 Intron 5216 - 9192 4902383 - 4906359 3977 sequence -
5 Exon 9193 - 9627 4906360 - 4906794 435 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2 
 Supporting GenBank
accession identifers 		 EU368184
NM_001165932
NM_026754
NM_001113558
EF529510
FJ217397
FJ217399
FJ217400
BC115608
BC115609
 AK003750
 Length  130 72
 Number of ATGs in frame  0 0
 Total number of ATGs  0 0
 Number of GTGs in frame  3 1
 Total number of GTGs  10 5
 Number of CTGs in frame  0 0
 Total number of CTGs  3 2
 Number of micro ORFs in frame  0 0
 Total number of micro ORFs  0 0
 GC percentage  51 49
 Number of pyrimidine tracks  1 0
Close 3' untranslated regions 
 UTR 1 
 Supporting GenBank
accession identifers 		 NM_001165932
NM_026754
NM_001113558
EU368184
AK003750
EF529510
FJ217397
FJ217399
FJ217400
BC115608
BC115609
 Length  337
 Number of ATGs in frame  1
 Total number of ATGs  6
 Number of GTGs in frame  2
 Total number of GTGs  8
 Number of CTGs in frame  1
 Total number of CTGs  6
 GC percentage  49
 Number of pyrimidine tracks  3
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-495 9440 - 9461 4906607 - 4906628 miranda
M2 mmu-miR-1192 9440 - 9461 4906607 - 4906628 miranda
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Transporter EXONT:004389 Sugar transporter, conserved site 2,3 8358 10432
Binding EXONT:001885 Protein binding 5,6,7,8,9,10,11 14466 36749
Localization EXONT:000071 Transmembrane_helix 1 166 234
Localization EXONT:000071 Transmembrane_helix 2 8304 8372
Localization EXONT:000071 Transmembrane_helix 3 10415 10477
Localization EXONT:000071 Transmembrane_helix 3,4 10505 12143
Localization EXONT:000071 Transmembrane_helix 4 12162 12230
Localization EXONT:000071 Transmembrane_helix 4,5 12243 14399
Localization EXONT:000071 Transmembrane_helix 6,7 14801 17871
Localization EXONT:000071 Transmembrane_helix 7 17884 17952
Localization EXONT:000071 Transmembrane_helix 7,8 17965 21790
Localization EXONT:000071 Transmembrane_helix 9 32969 33037
Localization EXONT:000071 Transmembrane_helix 9,10 33050 34185
Structure EXONT:000071 Transmembrane_helix 1 166 234
Structure EXONT:000071 Transmembrane_helix 2 8304 8372
Structure EXONT:000071 Transmembrane_helix 3 10415 10477
Structure EXONT:000071 Transmembrane_helix 3,4 10505 12143
Structure EXONT:000071 Transmembrane_helix 4 12162 12230
Structure EXONT:000071 Transmembrane_helix 4,5 12243 14399
Structure EXONT:000071 Transmembrane_helix 6,7 14801 17871
Structure EXONT:000071 Transmembrane_helix 7 17884 17952
Structure EXONT:000071 Transmembrane_helix 7,8 17965 21790
Structure EXONT:000071 Transmembrane_helix 9 32969 33037
Structure EXONT:000071 Transmembrane_helix 9,10 33050 34185
PTM EXONT:000992 N4-(N-acetylamino)glucosyl-L-asparagine 1 316 318
PTM EXONT:000164 O4'-phospho-L-tyrosine 7 17842 17844
Unclassified EXONT:009112 Major facilitator superfamily domain 1,2,3,4,5,6,7,8,9,10,11 412 36718
Unclassified EXONT:007889 Major facilitator superfamily domain, general substrate transporter 2,3,4,5,6,7,8,9,10 8292 34215
Gene Ucma

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Exon 1Exon 2Exon 3Exon 4Exon 1Exon 2Exon 3Exon 4Exon 5Extended region