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Previous gene FasterDB identifier: 11895 - PHYH (PAHX, PHYH1, RD) phytanoyl-CoA 2-hydroxylase Next gene
Gene Close
Symbol PHYH
Synonyms PAHX, PHYH1, RD
Description phytanoyl-CoA 2-hydroxylase
EnsEMBL link ENSG00000107537
Chromosome 10 - reverse strand
Chromosomal location
(UCSC link)		 13319796 - 13344412 (24617bp)
Sequence sequence
Associated transcripts CR623416 NM_006214 AF112977 BC029512 CR610525 CR600223 AF023462 CR597553 CR591194 CR623967 CR542055 NM_001037537
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 4 4 CR623416
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 7 -6 NM_006214
AF112977
BC029512
CR610525
CR600223
AF023462
CR597553
CR591194
CR623967
CR542055
NM_001037537
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 13344412 CR623416
P2 2 2283 13342130 NM_006214
P3 3 2667 13341746 NM_001037537
Protein prediction Close
 Transcript name   Sequence 
CR623416 sequence
NM_006214 sequence
AF112977 sequence
BC029512 sequence
CR610525 sequence
CR600223 sequence
AF023462 sequence
CR597553 sequence
CR591194 sequence
CR623967 sequence
CR542055 sequence
NM_001037537 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 11 24375 13320038 AATAAA no AW473079 3prime_est
PA2 11 24617 13319796 AATAAA no CR610525 Cdna
PA3 11 24617 13319796 AATAAA no CR623967 Cdna
PA4 11 25510 13318903 AATAAA no BE645857 3prime_est

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 2 CR623416
ES2 3 CR623416
NM_006214
AF112977
BC029512
CR610525
CR600223
AF023462
CR597553
CR591194
CR623967
CR542055
ES3 4 NM_001037537
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 -5.05 no TCCgtagtt
S2 5' (donor) 2 -5.45 no GTCgtatcc
S3 3' (acceptor) 2 -14.55 no ccggaatcccgcttacgtccAGT
S4 5' (donor) 3 8.48 no CGGgtgagg
S5 3' (acceptor) 3 -5.3 no gcgcggccgccctggggtcgGGG
S6 5' (donor) 4 9.09 no CCAgtaagt
S7 3' (acceptor) 4 6.57 no tgccttaattcacatcctagGTA
S8 3' (acceptor) 4 -1.3 yes ttaattcacatcctaggtagCTC
S9 5' (donor) 5 3.7 no TCGgtacag
S10 3' (acceptor) 5 11.15 no ggattctttttctcctttagGTA
S11 5' (donor) 6 5.24 no GAGgtcaga
S12 3' (acceptor) 6 6.17 no ttgcaaattaaattttctagGAA
S13 5' (donor) 7 4.89 no ATTgtaagg
S14 3' (acceptor) 7 10.77 no ttttttttttgctttcttagATT
S15 5' (donor) 7 5.99 yes CTGgtaatt
S16 5' (donor) 8 9.65 no GAGgtaggt
S17 3' (acceptor) 8 4.97 no gtagcaggttttcttttcagGCA
S18 5' (donor) 9 10.22 no AAGgtaagc
S19 3' (acceptor) 9 10.44 no tcacttgcctcttgttctagGGG
S20 5' (donor) 10 9.79 no AAGgtatgt
S21 3' (acceptor) 10 5.25 no aatttgttcactttgcacagGCA
S22 3' (acceptor) 11 7.89 no ctgtttgatattatttccagGAT
Conserved exons Close
 Gene identifier mouse   Position human  Position mouse 
9279 4 2
9279 5 3
9279 6 4
9279 7 5
9279 8 6
9279 9 7
9279 10 8
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 1
2 1
3 1
 Transcription termination & last exon(s) 
11 4
 Exon skipping 
2 1
3 11
4 1
 Alternative 3' splice sites 
4 1
 Alternative 5' splice sites 
7 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR) Yes Yes
 
ESRP1/2 (ESRP) Yes
 
FUS Yes
 
HNRNPA1 Yes
 
HNRNPA2B1 Yes
 
HNRNPAB
 
HNRNPC Yes
 
HNRNPF/HNRNPH1 Yes Yes
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM Yes
 
HNRNPU Yes
 
MBNL
 
NOVA1
 
PTBP1/2 (PTB) Yes Yes
 
QKI
 
RBFOX2 (FOX2) Yes
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 (SF2ASF)
 
SRSF2 (SC35)
 
SRSF5 (SRP40)
 
TDP43
 
TIA1/TIAL1 Yes
 
TRA2A
 
TRA2B
 
YBX1 (YB1)
 
Expression Close
 Exon position   Tissues   Cell lines   Cancer cell lines 
1 Expression Expression Expression
2 Expression Expression Expression
3 Expression Expression Expression
4 Expression Expression Expression
5 Expression Expression Expression
6 Expression Expression Expression
7 Expression Expression Expression
8 Expression Expression Expression
9 Expression Expression Expression
10 Expression Expression Expression
11 Expression Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 427 13343986-13344412 427 sequence download
1 Intron 428 - 2282 13342131-13343985 1855 sequence -
2 Exon 2283 - 2445 13341968-13342130 163 sequence download
2 Intron 2446 - 2666 13341747-13341967 221 sequence -
3 Exon 2667 - 2993 13341420-13341746 327 sequence download
3 Intron 2994 - 4167 13340246-13341419 1174 sequence -
4 Exon 4168 - 4226 13340187-13340245 59 sequence download
4 Intron 4227 - 6806 13337607-13340186 2580 sequence -
5 Exon 6807 - 6917 13337496-13337606 111 sequence download
5 Intron 6918 - 7816 13336597-13337495 899 sequence -
6 Exon 7817 - 7985 13336428-13336596 169 sequence download
6 Intron 7986 - 10500 13333913-13336427 2515 sequence -
7 Exon 10501 - 10588 13333825-13333912 88 sequence download
7 Intron 10589 - 13871 13330542-13333824 3283 sequence -
8 Exon 13872 - 14053 13330360-13330541 182 sequence download
8 Intron 14054 - 18573 13325840-13330359 4520 sequence -
9 Exon 18574 - 18723 13325690-13325839 150 sequence download
9 Intron 18724 - 21302 13323111-13325689 2579 sequence -
10 Exon 21303 - 21437 13322976-13323110 135 sequence download
10 Intron 21438 - 24058 13320355-13322975 2621 sequence -
11 Exon 24059 - 24617 13319796-13320354 559 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 NM_006214
AF112977
BC029512
CR610525
CR600223
AF023462
 CR623416
 NM_001037537
 Length  88 648 493
 Number of ATGs in frame  1 4 0
 Total number of ATGs  1 14 5
 Number of GTGs in frame  1 10 4
 Total number of GTGs  2 21 15
 Number of CTGs in frame  1 3 2
 Total number of CTGs  1 8 6
 Number of micro ORFs in frame  1 3 0
 Total number of micro ORFs  1 5 3
 GC percentage  80 48 56
 Number of pyrimidine tracks  0 5 3
Close 3' untranslated regions 
 UTR 1 
 Supporting GenBank
accession identifers 		 CR610525
CR623967
NM_006214
NM_001037537
AF112977
BC029512
AF023462
CR597553
CR591194
CR600223
CR623416
 Length  505
 Number of ATGs in frame  3
 Total number of ATGs  13
 Number of GTGs in frame  1
 Total number of GTGs  4
 Number of CTGs in frame  3
 Total number of CTGs  9
 GC percentage  34
 Number of pyrimidine tracks  6
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 hsa-miR-653 24123 - 24142 13320271 - 13320290 miranda
M2 hsa-miR-384 24152 - 24174 13320239 - 13320261 miranda
Group 2
M1 hsa-miR-361-5p 24456 - 24477 13319936 - 13319957 miranda
M2 hsa-miR-216b 24491 - 24513 13319900 - 13319922 miranda
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Binding EXONT:000045 Polypeptide_iron_ion_contact_site 8 13898 13900
Binding EXONT:000045 Polypeptide_iron_ion_contact_site 8 13904 13906
Binding EXONT:000045 Polypeptide_iron_ion_contact_site 9 18685 18687
Localization EXONT:000016 Peroxisome targeting signal 2 2326 2421
Localization EXONT:000020 Transit_peptide 2,4 2371 4182
Localization EXONT:000016 Peroxisome targeting signal 11 24098 24109
Structure EXONT:000037 Peptide_helix 5 6841 6864
Structure EXONT:000051 Beta_strand 5 6865 6879
Structure EXONT:000037 Peptide_helix 5,6 6895 7838
Structure EXONT:000051 Beta_strand 6 7866 7874
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 6 7872 7895
Structure EXONT:000051 Beta_strand 6 7881 7889
Structure EXONT:000051 Beta_strand 6 7914 7922
Structure EXONT:000051 Beta_strand 6 7929 7937
Structure EXONT:000037 Peptide_helix 6 7953 7976
Structure EXONT:000037 Peptide_helix 6,7 7980 10527
Structure EXONT:000051 Beta_strand 7 10531 10569
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 7,8 10570 13885
Structure EXONT:000045 Polypeptide_iron_ion_contact_site 8 13898 13900
Structure EXONT:000045 Polypeptide_iron_ion_contact_site 8 13904 13906
Structure EXONT:000037 Peptide_helix 8 13904 13915
Structure EXONT:000037 Peptide_helix 8 13931 13939
Structure EXONT:000051 Beta_strand 8 13940 13966
Structure EXONT:000051 Beta_strand 8 13991 13999
Structure EXONT:000037 Peptide_helix 8 14009 14017
Structure EXONT:000051 Beta_strand 9 18631 18639
Structure EXONT:000051 Beta_strand 9 18658 18669
Structure EXONT:000045 Polypeptide_iron_ion_contact_site 9 18685 18687
Structure EXONT:000051 Beta_strand 9 18685 18693
Structure EXONT:000051 Beta_strand 9 18706 18714
Structure EXONT:000051 Beta_strand 9,10 18718 21326
Structure EXONT:000037 Peptide_helix 10 21360 21377
Structure EXONT:000037 Peptide_helix 10,11 21432 24076
Structure EXONT:000051 Beta_strand 11 24080 24094
PTM EXONT:001307 N6-succinyl-L-lysine 5 6847 6849
PTM EXONT:000797 Ubiquitinylated lysine 6 7893 7895
PTM EXONT:001307 N6-succinyl-L-lysine 6 7893 7895
PTM EXONT:000164 O4'-phospho-L-tyrosine 6 7902 7904
PTM EXONT:000359 Iron containing modified residue 8 13898 13900
PTM EXONT:000359 Iron containing modified residue 8 13904 13906
PTM EXONT:001307 N6-succinyl-L-lysine 9 18586 18588
PTM EXONT:000164 O4'-phospho-L-tyrosine 9 18610 18612
PTM EXONT:001307 N6-succinyl-L-lysine 9 18649 18651
PTM EXONT:000359 Iron containing modified residue 9 18685 18687
PTM EXONT:000797 Ubiquitinylated lysine 10 21402 21404
Gene PHYH
Gene PHYH Gene PHYH
Gene PHYH Gene PHYH
Gene PHYH Gene PHYH
Gene PHYH Gene PHYH
Gene PHYH Gene PHYH
Gene PHYH Gene PHYH
Gene PHYH Gene PHYH
Gene PHYH Gene PHYH

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Extended region