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Previous gene FasterDB identifier: 11200 - CDC123 (C10orf7, D123) cell division cycle 123 homolog (S. cerevisiae) Next gene
Gene Close
Symbol CDC123
Synonyms C10orf7, D123
Description cell division cycle 123 homolog (S. cerevisiae)
EnsEMBL link ENSG00000151465
Chromosome 10 - forward strand
Chromosomal location
(UCSC link)		 12237961 - 12292587 (54627bp)
Sequence sequence
Associated transcripts NM_006023 D14878 AK225634 U27112 CR592461 AK308790 BC009598 CR595560 CR623116 BC001600 CR596007 CR595119 AK289362 CR597080 CR456966 AK023925
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 12 -754 NM_006023
D14878
AK225634
U27112
CR592461
BC009598
CR595560
CR623116
BC001600
CR596007
CR595119
AK289362
CR597080
CR456966
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 12237961 NM_006023
P2 1 227 12238187 AK308790
P3 1 264 12238224 AK289362
P4 12 49667 12287627 AK023925
Protein prediction Close
 Transcript name   Sequence 
NM_006023 sequence
D14878 sequence
AK225634 sequence
U27112 sequence
CR592461 sequence
AK308790 sequence
BC009598 sequence
CR595560 sequence
CR623116 sequence
BC001600 sequence
CR596007 sequence
CR595119 sequence
AK289362 sequence
CR597080 sequence
CR456966 sequence
AK023925 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 5 20531 12258491 no AK308790 Full_length
PA2 14 52040 12290000 no AK023925 Full_length
PA3 16 54627 12292587 AATAAA no D14878 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 9 NM_006023
D14878
AK225634
U27112
BC009598
CR595560
CR623116
BC001600
CR596007
CR595119
AK289362
CR597080
CR456966
ES2 13 NM_006023
D14878
AK225634
U27112
CR592461
BC009598
CR595560
CR623116
BC001600
CR596007
CR595119
AK289362
CR597080
CR456966
ES3 14 NM_006023
D14878
AK225634
U27112
CR592461
BC009598
CR595560
CR623116
BC001600
CR596007
CR595119
AK289362
CR597080
CR456966
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 7.66 no GAGgtgaga
S2 5' (donor) 2 9.06 no AAGgtaaag
S3 3' (acceptor) 2 9.93 no ttttggtgttttttttttagTGT
S4 5' (donor) 3 8.08 no CAGgttggt
S5 3' (acceptor) 3 10.63 no gtttgtttgtgtttttttagGGA
S6 5' (donor) 4 10.65 no ACGgtaaga
S7 3' (acceptor) 4 9.12 no ttttcctctttttcatgcagTGG
S8 5' (donor) 5 6.45 no AGGgtagga
S9 3' (acceptor) 5 11.29 no gatttcttctctctctgtagGCA
S10 5' (donor) 6 10.11 no GCCgtaagt
S11 3' (acceptor) 6 10.11 no gcatgtgcttcattctttagGAT
S12 5' (donor) 7 10.06 no GAGgtaaga
S13 3' (acceptor) 7 11.17 no cttttcttcttcttccaaagGTT
S14 5' (donor) 8 9.27 no TTGgtgagt
S15 3' (acceptor) 8 10.39 no attttttcttttgtttacagCTC
S16 5' (donor) 9 4.64 no ACGgtattg
S17 3' (acceptor) 9 2.81 no ctggaatgctgtgttgacagGAA
S18 5' (donor) 10 7.94 no ACTgtgagt
S19 3' (acceptor) 10 6.51 no gtaaaatattttcttgtcagGTA
S20 5' (donor) 11 10.45 no AGGgtaagt
S21 3' (acceptor) 11 11.9 no actttttttctcctttacagTTG
S22 5' (donor) 12 -21.69 no CTCctctct
S23 3' (acceptor) 12 9.93 no tttctctctctgtgctacagGGG
S24 5' (donor) 12 7.09 yes CAGgtacaa
S25 5' (donor) 13 -6 no ACActgtgt
S26 3' (acceptor) 13 -14.54 no ctcaggacactgtcctcctcTCT
S27 5' (donor) 14 -23.39 no CTCaaaaaa
S28 3' (acceptor) 14 -1.81 no gcacctcccactctggacacTGT
S29 5' (donor) 15 5.75 no CTGgtaaag
S30 3' (acceptor) 15 10.38 no cctttttcttctttgtacagGAT
S31 3' (acceptor) 16 8.12 no cccttggttttctttgacagAAG
Conserved exons Close
 Gene identifier mouse   Position human  Position mouse 
10033 1 1
10033 2 2
10033 3 3
10033 4 4
10033 5 5
10033 6 6
10033 7 7
10033 8 9
10033 10 10
10033 11 11
10033 12 12
10033 15 13
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 3
12 1
 Transcription termination & last exon(s) 
5 1
14 1
16 1
 Exon skipping 
9 13
13 14
14 14
 Alternative 5' splice sites 
12 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR) Yes Yes
 
ESRP1/2 (ESRP) Yes
 
FUS Yes
 
HNRNPA1 Yes
 
HNRNPA2B1 Yes
 
HNRNPAB
 
HNRNPC Yes
 
HNRNPF/HNRNPH1 Yes Yes
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM Yes
 
HNRNPU Yes
 
MBNL
 
NOVA1
 
PTBP1/2 (PTB) Yes Yes
 
QKI
 
RBFOX2 (FOX2) Yes
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 (SF2ASF)
 
SRSF2 (SC35)
 
SRSF5 (SRP40)
 
TDP43
 
TIA1/TIAL1 Yes
 
TRA2A
 
TRA2B
 
YBX1 (YB1)
 
Expression Close
 Exon position   Tissues   Cell lines   Cancer cell lines 
1 Expression Expression Expression
2 Expression Expression Expression
3 Expression Expression Expression
4 Expression Expression Expression
5 Expression Expression Expression
6 Expression Expression Expression
7 Expression Expression Expression
8 Expression Expression Expression
9 Expression Expression Expression
10 Expression Expression Expression
11 Expression Expression Expression
12 Expression Expression Expression
13 Expression Expression Expression
14 Expression Expression Expression
15 Expression Expression Expression
16 Expression Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 358 12237961 - 12238318 358 sequence download
1 Intron 359 - 2743 12238319 - 12240703 2385 sequence -
2 Exon 2744 - 2815 12240704 - 12240775 72 sequence download
2 Intron 2816 - 14005 12240776 - 12251965 11190 sequence -
3 Exon 14006 - 14063 12251966 - 12252023 58 sequence download
3 Intron 14064 - 14328 12252024 - 12252288 265 sequence -
4 Exon 14329 - 14361 12252289 - 12252321 33 sequence download
4 Intron 14362 - 19778 12252322 - 12257738 5417 sequence -
5 Exon 19779 - 19874 12257739 - 12257834 96 sequence download
5 Intron 19875 - 21399 12257835 - 12259359 1525 sequence -
6 Exon 21400 - 21506 12259360 - 12259466 107 sequence download
6 Intron 21507 - 34986 12259467 - 12272946 13480 sequence -
7 Exon 34987 - 35035 12272947 - 12272995 49 sequence download
7 Intron 35036 - 39086 12272996 - 12277046 4051 sequence -
8 Exon 39087 - 39162 12277047 - 12277122 76 sequence download
8 Intron 39163 - 39333 12277123 - 12277293 171 sequence -
9 Exon 39334 - 39369 12277294 - 12277329 36 sequence download
9 Intron 39370 - 41182 12277330 - 12279142 1813 sequence -
10 Exon 41183 - 41305 12279143 - 12279265 123 sequence download
10 Intron 41306 - 42495 12279266 - 12280455 1190 sequence -
11 Exon 42496 - 42524 12280456 - 12280484 29 sequence download
11 Intron 42525 - 50187 12280485 - 12288147 7663 sequence -
12 Exon 50188 - 51070 12288148 - 12289030 883 sequence download
12 Intron 51071 - 51311 12289031 - 12289271 241 sequence -
13 Exon 51312 - 51366 12289272 - 12289326 55 sequence download
13 Intron 51367 - 51433 12289327 - 12289393 67 sequence -
14 Exon 51434 - 52040 12289394 - 12290000 607 sequence download
14 Intron 52041 - 53619 12290001 - 12291579 1579 sequence -
15 Exon 53620 - 53757 12291580 - 12291717 138 sequence download
15 Intron 53758 - 54349 12291718 - 12292309 592 sequence -
16 Exon 54350 - 54627 12292310 - 12292587 278 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4 
 Supporting GenBank
accession identifers 		 NM_006023
D14878
AK225634
U27112
CR592461
BC009598
CR595560
CR623116
BC001600
CR596007
CR595119
 AK308790
 AK289362
 AK023925
 Length  284 58 21 485
 Number of ATGs in frame  0 0 0 1
 Total number of ATGs  2 0 0 8
 Number of GTGs in frame  0 0 0 4
 Total number of GTGs  1 1 1 15
 Number of CTGs in frame  1 0 0 2
 Total number of CTGs  4 1 0 10
 Number of micro ORFs in frame  0 0 0 0
 Total number of micro ORFs  1 0 0 4
 GC percentage  56 69 76 49
 Number of pyrimidine tracks  5 0 0 3
Close 3' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 AK308790
 AK023925
 D14878
U27112
BC009598
NM_006023
AK225634
BC001600
AK289362
CR623116
CR592461
CR597080
CR595119
CR596007
CR595560
 Length  639 1402 251
 Number of ATGs in frame  1 3 1
 Total number of ATGs  3 11 4
 Number of GTGs in frame  4 15 4
 Total number of GTGs  15 44 8
 Number of CTGs in frame  3 9 2
 Total number of CTGs  7 22 2
 GC percentage  28 53 46
 Number of pyrimidine tracks  8 30 0
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 hsa-miR-186 19897 - 19918 12257857 - 12257878 miranda
M2 hsa-miR-203 19918 - 19941 12257878 - 12257901 miranda
M3 hsa-miR-384 19963 - 19982 12257923 - 12257942 miranda
M4 hsa-miR-144 19972 - 19991 12257932 - 12257951 miranda
M5 hsa-miR-376c 19998 - 20020 12257958 - 12257980 miranda
M6 hsa-miR-144 20051 - 20070 12258011 - 12258030 miranda
M7 hsa-miR-425 20209 - 20231 12258169 - 12258191 miranda
Group 2
M1 hsa-miR-20b 54477 - 54499 12292437 - 12292459 miranda
M2 hsa-miR-20a 54477 - 54499 12292437 - 12292459 miranda
M3 hsa-miR-93 54477 - 54499 12292437 - 12292459 miranda
M4 hsa-miR-106b 54479 - 54499 12292439 - 12292459 miranda
M5 hsa-miR-125a-3p 54500 - 54522 12292460 - 12292482 miranda
M6 hsa-miR-562 54544 - 54550 12292504 - 12292510 pita
M7 hsa-miR-144 54581 - 54600 12292541 - 12292560 miranda
M8 hsa-miR-361-5p 54586 - 54607 12292546 - 12292567 miranda
M9 hsa-miR-376b 54604 - 54625 12292564 - 12292585 miranda
M10 hsa-miR-376a 54605 - 54625 12292565 - 12292585 miranda
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 2,3,4,5 2811 19793
PTM EXONT:000797 Ubiquitinylated lysine 1 354 356
PTM EXONT:000797 Ubiquitinylated lysine 2 2772 2774
PTM EXONT:000161 O-phospho-L-serine 3 14037 14039
PTM EXONT:000161 O-phospho-L-serine 4 14332 14334
PTM EXONT:000797 Ubiquitinylated lysine 5 19851 19853
PTM EXONT:000797 Ubiquitinylated lysine 6 21469 21471
PTM EXONT:000797 Ubiquitinylated lysine 8 39153 39155
PTM EXONT:000797 Ubiquitinylated lysine 10 41227 41229
PTM EXONT:000797 Ubiquitinylated lysine 10 41272 41274
PTM EXONT:000164 O4'-phospho-L-tyrosine 10 41284 41286
PTM EXONT:000161 O-phospho-L-serine 15 53668 53670
PTM EXONT:000164 O4'-phospho-L-tyrosine 15 53674 53676
PTM EXONT:000161 O-phospho-L-serine 15 53680 53682
PTM EXONT:000164 O4'-phospho-L-tyrosine 15 53683 53685
PTM EXONT:000797 Ubiquitinylated lysine 15 53695 53697
PTM EXONT:000797 Ubiquitinylated lysine 15 53734 53736
PTM EXONT:000797 Ubiquitinylated lysine 15 53752 53754
PTM EXONT:000797 Ubiquitinylated lysine 16 54350 54352
Gene CDC123
Gene CDC123 Gene CDC123
Gene CDC123 Gene CDC123
Gene CDC123 Gene CDC123
Gene CDC123 Gene CDC123
Gene CDC123 Gene CDC123
Gene CDC123 Gene CDC123
Gene CDC123 Gene CDC123
Gene CDC123 Gene CDC123

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 15Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 15Exon 16Extended region