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Previous gene FasterDB identifier: 10033 - Cdc123 (ENSMUSG00000039128) cell division cycle 123 homolog (S. cerevisiae) Gene Next gene
Gene Close
Symbol Cdc123
Synonyms ENSMUSG00000039128
Description cell division cycle 123 homolog (S. cerevisiae) Gene
EnsEMBL link ENSMUSG00000039128
Chromosome 2 - reverse strand
Chromosomal location
(UCSC link)		 5715340 - 5766027 (50688bp)
Sequence sequence
Associated transcripts AK159208 AK090122 NM_133837 BC022972 BC023821 AK141463 BC024787 AK161246 BC019753 AK215348
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 5766027 AK159208
P2 1 20 5766008 AK090122
P3 1 33 5765995 AK141463
P4 1 35 5765993 AK161246
Protein prediction Close
 Transcript name   Sequence 
AK159208 sequence
AK090122 sequence
NM_133837 sequence
BC022972 sequence
BC023821 sequence
AK141463 sequence
BC024787 sequence
AK161246 sequence
BC019753 sequence
AK215348 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 8 35463 5730565 no AK161246 Full_length
PA2 14 50311 5715717 no AK159208 Full_length
PA3 14 50688 5715340 AATAAA no NM_133837 Cdna
PA4 14 50688 5715340 AATAAA no AK090122 Full_length

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 8 AK159208
AK090122
NM_133837
BC022972
BC023821
AK141463
BC024787
BC019753
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 8.55 no GAGgtaacc
S2 5' (donor) 2 9.06 no AAGgtaaag
S3 3' (acceptor) 2 8.83 no ttgctgtattttttccccagTGT
S4 5' (donor) 3 8.08 no CAGgttggt
S5 3' (acceptor) 3 9.3 no tttgctttattttttcttagGGA
S6 5' (donor) 4 10.65 no ACGgtaaga
S7 3' (acceptor) 4 8.97 no cttctgtcttgtccatgcagTGG
S8 5' (donor) 5 6.45 no AGGgtagga
S9 3' (acceptor) 5 12.56 no cctgttctctgtctctctagGCA
S10 5' (donor) 6 10.11 no GCCgtaagt
S11 3' (acceptor) 6 8.75 no catacatgtttattgtttagGAT
S12 5' (donor) 7 9.85 no GAGgtaagc
S13 3' (acceptor) 7 10.29 no ttgcatttttctctccaaagGTT
S14 5' (donor) 8 -11.84 no TTCatattt
S15 3' (acceptor) 8 4.99 no tctttgtacttttcacccagCCA
S16 5' (donor) 9 9.27 no TTGgtgagt
S17 3' (acceptor) 9 7.57 no tatttattccgtgtctacagCTT
S18 5' (donor) 10 7.94 no ACTgtgagt
S19 3' (acceptor) 10 8.02 no actgaacgttttcttgtcagGTA
S20 5' (donor) 11 10.45 no AGGgtaagt
S21 3' (acceptor) 11 10.79 no gttttttttcttctttacagTTG
S22 5' (donor) 12 9.22 no CAGgtgaga
S23 3' (acceptor) 12 13.98 no ttttcttctgtctgttctagGGG
S24 5' (donor) 13 1.5 no CTGgtagag
S25 3' (acceptor) 13 6.47 no tctgttttctatttgtaaagGAT
S26 3' (acceptor) 14 8.49 no atcttgctttcctttgacagAAA
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
11200 1 1
11200 2 2
11200 3 3
11200 4 4
11200 5 5
11200 6 6
11200 7 7
11200 9 8
11200 10 10
11200 11 11
11200 12 12
11200 13 15
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 4
 Transcription termination & last exon(s) 
8 1
14 3
 Exon skipping 
8 8
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
3 Expression Expression
4 Expression Expression
5 Expression Expression
6 Expression Expression
7 Expression Expression
8 Expression Expression
9 Expression Expression
10 Expression Expression
11 Expression Expression
12 Expression Expression
13 Expression Expression
14 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 147 5765881-5766027 147 sequence download
1 Intron 148 - 2957 5763071-5765880 2810 sequence -
2 Exon 2958 - 3029 5762999-5763070 72 sequence download
2 Intron 3030 - 11268 5754760-5762998 8239 sequence -
3 Exon 11269 - 11326 5754702-5754759 58 sequence download
3 Intron 11327 - 11868 5754160-5754701 542 sequence -
4 Exon 11869 - 11901 5754127-5754159 33 sequence download
4 Intron 11902 - 21784 5744244-5754126 9883 sequence -
5 Exon 21785 - 21880 5744148-5744243 96 sequence download
5 Intron 21881 - 23599 5742429-5744147 1719 sequence -
6 Exon 23600 - 23706 5742322-5742428 107 sequence download
6 Intron 23707 - 34137 5731891-5742321 10431 sequence -
7 Exon 34138 - 34186 5731842-5731890 49 sequence download
7 Intron 34187 - 34963 5731065-5731841 777 sequence -
8 Exon 34964 - 35463 5730565-5731064 500 sequence download
8 Intron 35464 - 37475 5728553-5730564 2012 sequence -
9 Exon 37476 - 37551 5728477-5728552 76 sequence download
9 Intron 37552 - 39948 5726080-5728476 2397 sequence -
10 Exon 39949 - 40071 5725957-5726079 123 sequence download
10 Intron 40072 - 41006 5725022-5725956 935 sequence -
11 Exon 41007 - 41035 5724993-5725021 29 sequence download
11 Intron 41036 - 46492 5719536-5724992 5457 sequence -
12 Exon 46493 - 46621 5719407-5719535 129 sequence download
12 Intron 46622 - 49295 5716733-5719406 2674 sequence -
13 Exon 49296 - 49433 5716595-5716732 138 sequence download
13 Intron 49434 - 50101 5715927-5716594 668 sequence -
14 Exon 50102 - 50688 5715340-5715926 587 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4   UTR 5 
 Supporting GenBank
accession identifers 		 AK090122
 AK141463
 BC023821
 AK159208
NM_133837
BC022972
BC024787
BC019753
 AK161246
 Length  53 40 40 73 39
 Number of ATGs in frame  0 0 0 0 0
 Total number of ATGs  0 0 0 0 0
 Number of GTGs in frame  0 0 0 0 0
 Total number of GTGs  2 1 1 3 1
 Number of CTGs in frame  0 0 0 0 0
 Total number of CTGs  1 0 0 1 0
 Number of micro ORFs in frame  0 0 0 0 0
 Total number of micro ORFs  0 0 0 0 0
 GC percentage  68 65 68 67 64
 Number of pyrimidine tracks  0 0 0 0 0
Close 3' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 AK161246
 AK090122
AK159208
BC022972
BC023821
BC019753
AK141463
BC024787
 NM_133837
 Length  404 561 560
 Number of ATGs in frame  1 4 6
 Total number of ATGs  4 12 12
 Number of GTGs in frame  4 6 12
 Total number of GTGs  11 19 19
 Number of CTGs in frame  2 4 1
 Total number of CTGs  4 12 12
 GC percentage  39 48 48
 Number of pyrimidine tracks  3 2 2
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-22 35117 - 35137 5730891 - 5730911 miranda
M2 mmu-miR-202-3p 35249 - 35270 5730758 - 5730779 miranda
M3 mmu-miR-499 35265 - 35289 5730739 - 5730763 miranda
M4 mmu-miR-21 35274 - 35298 5730730 - 5730754 miranda
M5 mmu-miR-590-5p 35278 - 35298 5730730 - 5730750 miranda
M6 mmu-miR-103 35331 - 35351 5730677 - 5730697 miranda
M7 mmu-miR-107 35331 - 35351 5730677 - 5730697 miranda
M8 mmu-miR-496 35355 - 35378 5730650 - 5730673 miranda
M9 mmu-miR-101a 35383 - 35403 5730625 - 5730645 miranda
M10 mmu-miR-101b 35383 - 35403 5730625 - 5730645 miranda
M11 mmu-miR-200b 35393 - 35416 5730612 - 5730635 miranda
M12 mmu-miR-429 35393 - 35416 5730612 - 5730635 miranda
M13 mmu-miR-200c 35394 - 35416 5730612 - 5730634 miranda
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Localization EXONT:000065 Endosomal_localization_signal 3 1217 1229
Localization EXONT:000066 Lysosomal_localization_signal 3 1217 1229
Localization EXONT:000064 Nuclear_localization_signal 3 1340 1358
Localization EXONT:000071 Transmembrane_helix 5 1821 1889
Localization EXONT:000071 Transmembrane_helix 5 1917 1979
Localization EXONT:000071 Transmembrane_helix 5,6 2004 2238
Localization EXONT:000071 Transmembrane_helix 6 2251 2313
Localization EXONT:000071 Transmembrane_helix 7,8 2432 2667
Localization EXONT:000071 Transmembrane_helix 8 2701 2769
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 3,4 1166 1690
Structure EXONT:000024 Compositionally_biased_region_of_peptide 3,4 1208 1672
Structure EXONT:000071 Transmembrane_helix 5 1821 1889
Structure EXONT:000071 Transmembrane_helix 5 1917 1979
Structure EXONT:000071 Transmembrane_helix 5,6 2004 2238
Structure EXONT:000071 Transmembrane_helix 6 2251 2313
Structure EXONT:000071 Transmembrane_helix 7,8 2432 2667
Structure EXONT:000071 Transmembrane_helix 8 2701 2769
Gene Cdc123

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Extended region