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Previous gene FasterDB identifier: 11358 - CAMK1D (CKLiK) calcium/calmodulin-dependent protein kinase ID Next gene
Gene Close
Symbol CAMK1D
Synonyms CKLiK
Description calcium/calmodulin-dependent protein kinase ID
EnsEMBL link ENSG00000183049
Chromosome 10 - forward strand
Chromosomal location
(UCSC link)		 12391583 - 12871735 (480153bp)
Sequence sequence
Associated transcripts NM_020397 NM_153498 AB081726 CR616818
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 12391583 NM_020397
NM_153498
P2 3 317153 12708735 CR616818
Protein prediction Close
 Transcript name   Sequence 
NM_020397 sequence
NM_153498 sequence
AB081726 sequence
CR616818 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 10 476560 12868142 no NM_020397 Cdna
PA2 11 480153 12871735 no NM_153498 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 3 NM_020397
NM_153498
AB081726
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 10.74 no AACgtaagt
S2 5' (donor) 2 -11.13 no AAGtaagtg
S3 3' (acceptor) 2 11.25 no ttttccttctttgttcacagCGG
S4 5' (donor) 3 8.56 no GCTgtaagt
S5 3' (acceptor) 3 10.88 no gcgtctattttttttttcagGAT
S6 5' (donor) 4 9.16 no AAGgtgagg
S7 3' (acceptor) 4 7.04 no aatatgttcttttttgccagGGT
S8 5' (donor) 5 10.48 no TCGgtaagg
S9 3' (acceptor) 5 10.11 no ttttcttattttctttctagCCC
S10 5' (donor) 6 8 no CTTgtaagt
S11 3' (acceptor) 6 11.95 no ttttctttgtctttctgcagCTC
S12 5' (donor) 7 8.37 no CTGgtaggt
S13 3' (acceptor) 7 7.88 no tactccattttgtctcctagGCT
S14 5' (donor) 8 9.33 no ATGgtaagg
S15 3' (acceptor) 8 9.03 no tgtgccttctttttgaacagCAA
S16 5' (donor) 9 9.35 no AGAgtaagt
S17 3' (acceptor) 9 10.72 no cacctttgcctctgtttcagGAT
S18 5' (donor) 10 4.94 no ACTgtgcgt
S19 3' (acceptor) 10 6.84 no tttcctttctgaaatttcagCAA
S20 3' (acceptor) 11 12.71 no acttctgctgttccctgcagGTC
Conserved exons Close
 Gene identifier mouse   Position human  Position mouse 
9784 2 2
9784 4 3
9784 5 4
9784 6 5
9784 7 6
9784 8 7
9784 9 8
9784 10 9
9784 11 10
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 1
3 1
 Transcription termination & last exon(s) 
10 1
11 1
 Exon skipping 
3 3
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR) Yes Yes
 
ESRP1/2 (ESRP) Yes
 
FUS Yes
 
HNRNPA1 Yes
 
HNRNPA2B1 Yes
 
HNRNPAB
 
HNRNPC Yes
 
HNRNPF/HNRNPH1 Yes Yes
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM Yes
 
HNRNPU Yes
 
MBNL
 
NOVA1
 
PTBP1/2 (PTB) Yes Yes
 
QKI
 
RBFOX2 (FOX2) Yes
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 (SF2ASF)
 
SRSF2 (SC35)
 
SRSF5 (SRP40)
 
TDP43
 
TIA1/TIAL1 Yes
 
TRA2A
 
TRA2B
 
YBX1 (YB1)
 
Expression Close
 Exon position   Tissues   Cell lines   Cancer cell lines 
1 Expression Expression Expression
2 Expression Expression Expression
3 Expression Expression Expression
4 Expression Expression Expression
5 Expression Expression Expression
6 Expression Expression Expression
7 Expression Expression Expression
8 Expression Expression Expression
9 Expression Expression Expression
10 Expression Expression Expression
11 Expression Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 327 12391583 - 12391909 327 sequence download
1 Intron 328 - 203641 12391910 - 12595223 203314 sequence -
2 Exon 203642 - 203774 12595224 - 12595356 133 sequence download
2 Intron 203775 - 317152 12595357 - 12708734 113378 sequence -
3 Exon 317153 - 317227 12708735 - 12708809 75 sequence download
3 Intron 317228 - 411364 12708810 - 12802946 94137 sequence -
4 Exon 411365 - 411503 12802947 - 12803085 139 sequence download
4 Intron 411504 - 420089 12803086 - 12811671 8586 sequence -
5 Exon 420090 - 420216 12811672 - 12811798 127 sequence download
5 Intron 420217 - 441574 12811799 - 12833156 21358 sequence -
6 Exon 441575 - 441650 12833157 - 12833232 76 sequence download
6 Intron 441651 - 464611 12833233 - 12856193 22961 sequence -
7 Exon 464612 - 464724 12856194 - 12856306 113 sequence download
7 Intron 464725 - 466666 12856307 - 12858248 1942 sequence -
8 Exon 466667 - 466745 12858249 - 12858327 79 sequence download
8 Intron 466746 - 474881 12858328 - 12866463 8136 sequence -
9 Exon 474882 - 474969 12866464 - 12866551 88 sequence download
9 Intron 474970 - 475989 12866552 - 12867571 1020 sequence -
10 Exon 475990 - 476107 12867572 - 12867689 118 sequence download
10 Intron 476108 - 479185 12867690 - 12870767 3078 sequence -
11 Exon 479186 - 480153 12870768 - 12871735 968 sequence download
Close  5' untranslated regions 
 UTR 1 
 Supporting GenBank
accession identifers 		 NM_020397
NM_153498
AB081726
 Length  235
 Number of ATGs in frame  0
 Total number of ATGs  0
 Number of GTGs in frame  0
 Total number of GTGs  4
 Number of CTGs in frame  0
 Total number of CTGs  1
 Number of micro ORFs in frame  0
 Total number of micro ORFs  0
 GC percentage  79
 Number of pyrimidine tracks  2
Close 3' untranslated regions 
 UTR 1   UTR 2 
 Supporting GenBank
accession identifers 		 NM_020397
 NM_153498
AB081726
CR616818
 Length  418 849
 Number of ATGs in frame  4 5
 Total number of ATGs  6 10
 Number of GTGs in frame  5 9
 Total number of GTGs  15 22
 Number of CTGs in frame  3 6
 Total number of CTGs  7 14
 GC percentage  52 47
 Number of pyrimidine tracks  1 6
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 hsa-miR-767-5p 479398 - 479405 12870980 - 12870987 pita
M2 hsa-miR-145 479421 - 479428 12871003 - 12871010 targetscan
M3 hsa-miR-181d 479454 - 479476 12871036 - 12871058 miranda
M4 hsa-miR-936 479455 - 479461 12871037 - 12871043 pita
M5 hsa-miR-367 479460 - 479467 12871042 - 12871049 pictar
M6 hsa-miR-539 479463 - 479485 12871045 - 12871067 miranda
M7 hsa-miR-223 479474 - 479496 12871056 - 12871078 miranda
M8 hsa-miR-539 479478 - 479484 12871060 - 12871066 pita
M9 hsa-miR-539 479478 - 479486 12871060 - 12871068 targetscan
M10 hsa-miR-758 479483 - 479490 12871065 - 12871072 targetscan
M11 hsa-miR-582-5p 479488 - 479494 12871070 - 12871076 pita
M12 hsa-miR-29b 479526 - 479532 12871108 - 12871114 pita
M13 hsa-miR-29a 479526 - 479533 12871108 - 12871115 targetscan
M14 hsa-miR-29c 479526 - 479532 12871108 - 12871114 pita
M15 hsa-miR-29b 479526 - 479533 12871108 - 12871115 targetscan
M16 hsa-miR-29c 479526 - 479533 12871108 - 12871115 pictar
M17 hsa-miR-29c 479526 - 479533 12871108 - 12871115 targetscan
M18 hsa-miR-29b 479526 - 479533 12871108 - 12871115 pictar
M19 hsa-miR-29a 479526 - 479533 12871108 - 12871115 pictar
M20 hsa-miR-29a 479526 - 479532 12871108 - 12871114 pita
M21 hsa-miR-31 479543 - 479550 12871125 - 12871132 pictar
M22 hsa-miR-450b-5p 479546 - 479552 12871128 - 12871134 pita
M23 hsa-miR-1253 479606 - 479612 12871188 - 12871194 pita
M24 hsa-miR-1300 479607 - 479613 12871189 - 12871195 pita
M25 hsa-miR-329 479614 - 479639 12871196 - 12871221 miranda
M26 hsa-miR-362-3p 479619 - 479639 12871201 - 12871221 miranda
M27 hsa-miR-409-5p 479619 - 479625 12871201 - 12871207 pita
M28 hsa-miR-329 479632 - 479638 12871214 - 12871220 pita
M29 hsa-miR-362-3p 479632 - 479638 12871214 - 12871220 pita
M30 hsa-miR-145 479656 - 479678 12871238 - 12871260 miranda
M31 hsa-miR-145 479671 - 479678 12871253 - 12871260 pictar
M32 hsa-miR-145 479671 - 479678 12871253 - 12871260 targetscan
M33 hsa-miR-145 479671 - 479677 12871253 - 12871259 pita
M34 hsa-miR-495 479696 - 479718 12871278 - 12871300 miranda
M35 hsa-miR-338-5p 479696 - 479702 12871278 - 12871284 pita
M36 hsa-miR-367 479701 - 479708 12871283 - 12871290 pictar
M37 hsa-miR-606 479784 - 479790 12871366 - 12871372 pita
M38 hsa-miR-216b 479791 - 479813 12871373 - 12871395 miranda
M39 hsa-miR-590-3p 479835 - 479855 12871417 - 12871437 miranda
M40 hsa-miR-590-3p 479848 - 479854 12871430 - 12871436 pita
M41 hsa-miR-29c 479874 - 479881 12871456 - 12871463 pictar
M42 hsa-miR-29b 479874 - 479881 12871456 - 12871463 pictar
M43 hsa-miR-29a 479874 - 479881 12871456 - 12871463 pictar
M44 hsa-miR-367 479875 - 479882 12871457 - 12871464 pictar
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Catalytic EXONT:002212 Protein kinase-like domain 1,2,3,4,5,6,7,8,9,10 281 476037
Catalytic EXONT:002406 Protein kinase domain 1,2,3,4,5,6,7,8,9 302 474885
Catalytic EXONT:003188 Serine/threonine- /dual specificity protein kinase, catalytic domain 1,2,4,5,6,7,8,9 302 474885
Catalytic EXONT:005262 Serine/threonine-protein kinase, active site 4,5 411483 420107
Binding EXONT:002406 Protein kinase domain 1,2,3,4,5,6,7,8,9 302 474885
Binding EXONT:003188 Serine/threonine- /dual specificity protein kinase, catalytic domain 1,2,4,5,6,7,8,9 302 474885
Binding EXONT:000062 Nucleotide_binding_site 1,2 320 203660
Binding EXONT:007898 Protein kinase, ATP binding site 1,2 320 203720
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 1 236 274
Structure EXONT:000051 Beta_strand 1 272 280
Structure EXONT:000037 Peptide_helix 1 290 301
Structure EXONT:000051 Beta_strand 1,2 302 203642
Structure EXONT:000051 Beta_strand 2 203655 203675
Structure EXONT:000022 Polypeptide_turn_motif 2 203676 203684
Structure EXONT:000051 Beta_strand 2 203691 203714
Structure EXONT:000037 Peptide_helix 2 203745 203774
Structure EXONT:000037 Peptide_helix 4 411381 411401
Structure EXONT:000037 Peptide_helix 4 411417 411476
Structure EXONT:000037 Peptide_helix 5 420090 420098
Structure EXONT:000051 Beta_strand 5 420099 420119
Structure EXONT:000051 Beta_strand 5 420132 420140
Structure EXONT:000037 Peptide_helix 6 441577 441588
Structure EXONT:000037 Peptide_helix 6,7 441610 464618
Structure EXONT:000037 Peptide_helix 7 464646 464675
Structure EXONT:000022 Polypeptide_turn_motif 7 464694 464711
Structure EXONT:000037 Peptide_helix 7,8 464718 466689
Structure EXONT:000022 Polypeptide_turn_motif 8 466702 466710
Structure EXONT:000037 Peptide_helix 8 466720 466731
Structure EXONT:000037 Peptide_helix 8,9 466741 474888
Structure EXONT:000037 Peptide_helix 9 474916 474948
Structure EXONT:000037 Peptide_helix 9,10 474961 476001
Structure EXONT:000024 Compositionally_biased_region_of_peptide 10,11 476044 479238
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 10 476047 476097
PTM EXONT:000161 O-phospho-L-serine 1 257 259
PTM EXONT:000797 Ubiquitinylated lysine 2 203703 203705
PTM EXONT:000161 O-phospho-L-serine 4 411429 411431
PTM EXONT:000164 O4'-phospho-L-tyrosine 5 420105 420110
PTM EXONT:000180 N-acetylated L-lysine 5 420171 420173
PTM EXONT:000192 N6-acetyl-L-lysine 5 420171 420173
PTM EXONT:000161 O-phospho-L-serine 5 420186 420188
PTM EXONT:000162 O-phospho-L-threonine 5 420189 420191
PTM EXONT:000180 N-acetylated L-lysine 6 441595 441597
PTM EXONT:000192 N6-acetyl-L-lysine 6 441595 441597
PTM EXONT:000180 N-acetylated L-lysine 8 466696 466698
PTM EXONT:000192 N6-acetyl-L-lysine 8 466696 466698
PTM EXONT:000161 O-phospho-L-serine 10 476044 476049
PTM EXONT:000161 O-phospho-L-serine 10 476080 476082
Gene CAMK1D
Gene CAMK1D Gene CAMK1D
Gene CAMK1D Gene CAMK1D
Gene CAMK1D Gene CAMK1D
Gene CAMK1D Gene CAMK1D
Gene CAMK1D Gene CAMK1D
Gene CAMK1D Gene CAMK1D
Gene CAMK1D Gene CAMK1D
Gene CAMK1D Gene CAMK1D

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Extended region