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Previous gene FasterDB identifier: 17088 - TEX2 (HT008, KIAA1738, TMEM96) testis expressed 2 Next gene
Gene Close
Symbol TEX2
Synonyms HT008, KIAA1738, TMEM96
Description testis expressed 2
EnsEMBL link ENSG00000136478
Chromosome 17 - reverse strand
Chromosomal location
(UCSC link)		 62224796 - 62340656 (115861bp)
Sequence sequence
Associated transcripts BC040522 BC036672 NM_018469 AK091214 AL834251 BC040521 AL832371 CR627433 AB051525 BC008896 AK091156 AK000758 BC108279 AF163260 BC033661 AF220182 AK000369 AK314316 BX648260 AK130183
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 6 21 BC040522
BC036672
AK091214
AL834251
AL832371
CR627433
AB051525
BC008896
AK091156
AK000758
BC108279
AF163260
BC033661
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
IR1 12 BX648260
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 62340656 BC040522
BC036672
P2 1 56 62340601 AK091214
P3 2 32540 62308117 CR627433
P4 3 49910 62290747 AK091156
P5 3 50663 62289994 AK000758
P6 7 85895 62254762 AK000369
P7 7 85950 62254707 AK314316
P8 10 107063 62233594 BX648260
P9 13 114491 62226166 AK130183
P10 13 115622 62225035 AK130183
Protein prediction Close
 Transcript name   Sequence 
BC040522 sequence
BC036672 sequence
NM_018469 sequence
AK091214 sequence
AL834251 sequence
BC040521 sequence
AL832371 sequence
CR627433 sequence
AB051525 sequence
BC008896 sequence
AK091156 sequence
AK000758 sequence
BC108279 sequence
AF163260 sequence
BC033661 sequence
AF220182 sequence
AK000369 sequence
AK314316 sequence
BX648260 sequence
AK130183 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 11 110239 62230418 no AK091214 Full_length
PA2 13 114328 62226329 no AK314316 Full_length
PA3 13 115607 62225050 ATTAAA no AK091156 Full_length
PA4 13 115607 62225050 ATTAAA no AK000758 Full_length
PA5 13 115607 62225050 ATTAAA yes AK000369 Full_length
PA6 13 115861 62224796 AATAAA yes NM_018469 Cdna
PA7 13 115861 62224796 AATAAA yes BC040521 Cdna
PA8 13 115861 62224796 AATAAA yes BC108279 Cdna
PA9 13 115861 62224796 AATAAA no AK130183 Full_length
PA10 13 117305 62223352 AATACA no AI420534 3prime_est

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 2 BC040522
BC036672
NM_018469
AK091214
AL834251
BC040521
AL832371
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 7.23 no TGGgtgagc
S2 5' (donor) 2 3.43 no TCGgtctgt
S3 3' (acceptor) 2 -13.04 no ccttctggaaaattccttgaAGA
S4 5' (donor) 3 10.22 no AAGgtaagc
S5 3' (acceptor) 3 9.69 no ttttctcactgttttcacagAGC
S6 5' (donor) 4 9.6 no AAGgtgagc
S7 3' (acceptor) 4 5.55 no tggaagtttttcttcatcagGGA
S8 5' (donor) 5 9.43 no CAGgtaatg
S9 3' (acceptor) 5 11.98 no tcatttttctttctctgtagATT
S10 5' (donor) 6 9.06 no AAGgtaaag
S11 3' (acceptor) 6 6.26 no tttcttcattgtgtgaatagCCC
S12 3' (acceptor) 6 9.3 yes ccccgtcttcttggctccagGGC
S13 5' (donor) 7 7.22 no AAGgtatca
S14 3' (acceptor) 7 7.7 no ggtcccttttcttttgccagTTG
S15 5' (donor) 8 9.01 no AAGgtaact
S16 3' (acceptor) 8 8.69 no tgtttgcttgtttcctctagCTC
S17 5' (donor) 9 9.16 no AGGgtaagg
S18 3' (acceptor) 9 9.37 no ttttttcaccatttctccagGAC
S19 5' (donor) 10 9.25 no AGGgtgagt
S20 3' (acceptor) 10 9.66 no gtgactctctctctgtccagTTG
S21 5' (donor) 11 8.27 no ATGgtgcgt
S22 3' (acceptor) 11 8.09 no tttgtgttccacatttgaagGTA
S23 5' (donor) 12 7.82 no CAGgtaaac
S24 3' (acceptor) 12 6.57 no tattacttgtcttcaaaaagGTA
S25 3' (acceptor) 13 10.03 no tctttaatatcttcctacagAAA
Conserved exons Close
 Gene identifier mouse   Position human  Position mouse 
19072 1 1
19072 3 3
19072 4 4
19072 5 5
19072 6 6
19072 7 7
19072 8 8
19072 9 9
19072 10 10
19072 11 11
19072 12 12
19072 13 13
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 2
2 1
3 2
7 2
10 1
13 2
 Transcription termination & last exon(s) 
11 1
13 9
 Exon skipping 
2 7
 Alternative 3' splice sites 
6 1
 Intron retentions 
12 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR) Yes Yes
 
ESRP1/2 (ESRP) Yes
 
FUS Yes
 
HNRNPA1 Yes
 
HNRNPA2B1 Yes
 
HNRNPAB
 
HNRNPC Yes
 
HNRNPF/HNRNPH1 Yes Yes
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM Yes
 
HNRNPU Yes
 
MBNL
 
NOVA1
 
PTBP1/2 (PTB) Yes Yes
 
QKI
 
RBFOX2 (FOX2) Yes
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 (SF2ASF)
 
SRSF2 (SC35)
 
SRSF5 (SRP40)
 
TDP43
 
TIA1/TIAL1 Yes
 
TRA2A
 
TRA2B
 
YBX1 (YB1)
 
Expression Close
 Exon position   Tissues   Cell lines   Cancer cell lines 
1 Expression Expression Expression
2 Expression Expression Expression
3 Expression Expression Expression
4 Expression Expression Expression
5 Expression Expression Expression
6 Expression Expression Expression
7 Expression Expression Expression
8 Expression Expression Expression
9 Expression Expression Expression
10 Expression Expression Expression
11 Expression Expression Expression
12 Expression Expression Expression
13 Expression Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 129 62340528-62340656 129 sequence download
1 Intron 130 - 32539 62308118-62340527 32410 sequence -
2 Exon 32540 - 32688 62307969-62308117 149 sequence download
2 Intron 32689 - 49054 62291603-62307968 16366 sequence -
3 Exon 49055 - 50723 62289934-62291602 1669 sequence download
3 Intron 50724 - 68201 62272456-62289933 17478 sequence -
4 Exon 68202 - 68402 62272255-62272455 201 sequence download
4 Intron 68403 - 69407 62271250-62272254 1005 sequence -
5 Exon 69408 - 69738 62270919-62271249 331 sequence download
5 Intron 69739 - 74860 62265797-62270918 5122 sequence -
6 Exon 74861 - 75129 62265528-62265796 269 sequence download
6 Intron 75130 - 85825 62254832-62265527 10696 sequence -
7 Exon 85826 - 85972 62254685-62254831 147 sequence download
7 Intron 85973 - 92097 62248560-62254684 6125 sequence -
8 Exon 92098 - 92197 62248460-62248559 100 sequence download
8 Intron 92198 - 102363 62238294-62248459 10166 sequence -
9 Exon 102364 - 102496 62238161-62238293 133 sequence download
9 Intron 102497 - 108329 62232328-62238160 5833 sequence -
10 Exon 108330 - 108455 62232202-62232327 126 sequence download
10 Intron 108456 - 110142 62230515-62232201 1687 sequence -
11 Exon 110143 - 110352 62230305-62230514 210 sequence download
11 Intron 110353 - 112335 62228322-62230304 1983 sequence -
12 Exon 112336 - 112456 62228201-62228321 121 sequence download
12 Intron 112457 - 114205 62226452-62228200 1749 sequence -
13 Exon 114206 - 115861 62224796-62226451 1656 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4   UTR 5   UTR 6   UTR 7 
 Supporting GenBank
accession identifers 		 CR627433
 BC036672
 AK091214
 BC040522
BC008896
NM_018469
AL834251
BC040521
AL832371
 BC033661
 AF220182
 BX648260
 Length  174 152 99 1594 139 427 1424
 Number of ATGs in frame  0 1 1 6 0 2 3
 Total number of ATGs  2 1 1 17 0 7 16
 Number of GTGs in frame  3 0 0 17 1 3 20
 Total number of GTGs  5 1 1 34 3 10 54
 Number of CTGs in frame  2 2 1 18 0 1 13
 Total number of CTGs  5 2 1 32 2 8 35
 Number of micro ORFs in frame  0 1 1 2 0 1 3
 Total number of micro ORFs  1 1 1 2 0 3 12
 GC percentage  60 76 69 54 57 53 54
 Number of pyrimidine tracks  1 0 0 13 0 2 10
Close 3' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4 
 Supporting GenBank
accession identifers 		 AK091214
 BC036672
BC008896
 BX648260
AB051525
BC033661
AL832371
CR627433
AF163260
BC040522
AL834251
AK091156
AK000758
AF220182
AK000369
 NM_018469
BC040521
BC108279
 Length  896 2164 3393 1533
 Number of ATGs in frame  5 19 21 9
 Total number of ATGs  15 52 69 33
 Number of GTGs in frame  8 18 24 10
 Total number of GTGs  20 53 87 36
 Number of CTGs in frame  3 17 19 12
 Total number of CTGs  10 34 51 33
 GC percentage  52 45 43 43
 Number of pyrimidine tracks  2 14 25 11
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 hsa-miR-182 114417 - 114424 62226233 - 62226240 pictar
M2 hsa-miR-298 114446 - 114453 62226204 - 62226211 pita
M3 hsa-miR-206 114471 - 114478 62226179 - 62226186 pictar
M4 hsa-miR-1 114471 - 114478 62226179 - 62226186 pictar
M5 hsa-miR-128 114477 - 114483 62226174 - 62226180 pita
M6 hsa-miR-27a 114477 - 114484 62226173 - 62226180 pita
M7 hsa-miR-27b 114477 - 114484 62226173 - 62226180 pita
M8 hsa-miR-425 114486 - 114492 62226165 - 62226171 pita
M9 hsa-miR-1 114489 - 114496 62226161 - 62226168 pictar
M10 hsa-miR-206 114489 - 114496 62226161 - 62226168 pictar
M11 hsa-miR-302c 114832 - 114859 62225798 - 62225825 miranda
M12 hsa-miR-302b 114833 - 114859 62225798 - 62225824 miranda
M13 hsa-miR-302a 114833 - 114859 62225798 - 62225824 miranda
M14 hsa-miR-105 114878 - 114884 62225773 - 62225779 pita
M15 hsa-miR-135b 114894 - 114901 62225756 - 62225763 pictar
M16 hsa-miR-135a 114894 - 114901 62225756 - 62225763 pictar
M17 hsa-miR-1201 114956 - 114962 62225695 - 62225701 pita
M18 hsa-miR-135b 114963 - 114970 62225687 - 62225694 pictar
M19 hsa-miR-135a 114963 - 114970 62225687 - 62225694 targetscan
M20 hsa-miR-135a 114963 - 114970 62225687 - 62225694 pictar
M21 hsa-miR-135b 114963 - 114970 62225687 - 62225694 targetscan
M22 hsa-miR-135a 114963 - 114970 62225687 - 62225694 pita
M23 hsa-miR-135b 114963 - 114970 62225687 - 62225694 pita
M24 hsa-miR-135a 114986 - 114993 62225664 - 62225671 pictar
M25 hsa-miR-135b 114986 - 114993 62225664 - 62225671 pictar
M26 hsa-miR-488 114989 - 114996 62225661 - 62225668 pita
M27 hsa-miR-181b 115009 - 115040 62225617 - 62225648 miranda
M28 hsa-miR-876-3p 115009 - 115015 62225642 - 62225648 pita
M29 hsa-miR-181a 115018 - 115040 62225617 - 62225639 miranda
M30 hsa-miR-181d 115018 - 115040 62225617 - 62225639 miranda
M31 hsa-miR-181c 115019 - 115040 62225617 - 62225638 miranda
M32 hsa-miR-543 115020 - 115041 62225616 - 62225637 miranda
M33 hsa-miR-570 115037 - 115043 62225614 - 62225620 pita
M34 hsa-miR-135b 115124 - 115131 62225526 - 62225533 pictar
M35 hsa-miR-135a 115124 - 115131 62225526 - 62225533 pictar
M36 hsa-miR-142-3p 115292 - 115314 62225343 - 62225365 miranda
M37 hsa-miR-142-3p 115306 - 115314 62225343 - 62225351 targetscan
M38 hsa-miR-142-3p 115307 - 115313 62225344 - 62225350 pita
M39 hsa-miR-182 115313 - 115336 62225321 - 62225344 miranda
M40 hsa-miR-182 115328 - 115335 62225322 - 62225329 pictar
M41 hsa-miR-182 115328 - 115335 62225322 - 62225329 targetscan
M42 hsa-miR-182 115329 - 115335 62225322 - 62225328 pita
M43 hsa-miR-543 115346 - 115366 62225291 - 62225311 miranda
M44 hsa-miR-105 115347 - 115353 62225304 - 62225310 pita
M45 hsa-miR-543 115359 - 115365 62225292 - 62225298 pita
M46 hsa-miR-1225-3p 115381 - 115387 62225270 - 62225276 pita
M47 hsa-miR-18b 115501 - 115524 62225133 - 62225156 miranda
M48 hsa-miR-18a 115501 - 115524 62225133 - 62225156 miranda
M49 hsa-miR-548d-3p 115503 - 115510 62225147 - 62225154 pita
M50 hsa-miR-18a 115516 - 115523 62225134 - 62225141 pictar
M51 hsa-miR-18a 115516 - 115523 62225134 - 62225141 targetscan
M52 hsa-miR-18b 115516 - 115523 62225134 - 62225141 targetscan
M53 hsa-miR-18b 115516 - 115523 62225134 - 62225141 pictar
M54 hsa-miR-18a 115517 - 115523 62225134 - 62225140 pita
M55 hsa-miR-18b 115517 - 115523 62225134 - 62225140 pita
M56 hsa-miR-1 115604 - 115626 62225031 - 62225053 miranda
Group 2
M1 hsa-miR-206 115619 - 115626 62225031 - 62225038 pictar
M2 hsa-miR-1 115619 - 115626 62225031 - 62225038 pictar
M3 hsa-miR-101 115633 - 115639 62225018 - 62225024 pita
M4 hsa-miR-548c-3p 115643 - 115649 62225008 - 62225014 pita
M5 hsa-miR-1197 115684 - 115690 62224967 - 62224973 pita
M6 hsa-miR-340 115685 - 115708 62224949 - 62224972 miranda
M7 hsa-miR-32 115700 - 115721 62224936 - 62224957 miranda
M8 hsa-miR-92a 115700 - 115721 62224936 - 62224957 miranda
M9 hsa-miR-363 115700 - 115721 62224936 - 62224957 miranda
M10 hsa-miR-92b 115700 - 115721 62224936 - 62224957 miranda
M11 hsa-miR-25 115700 - 115721 62224936 - 62224957 miranda
M12 hsa-miR-340 115701 - 115707 62224950 - 62224956 pita
M13 hsa-miR-367 115703 - 115721 62224936 - 62224954 miranda
M14 hsa-miR-32 115713 - 115720 62224937 - 62224944 pita
M15 hsa-miR-92a 115713 - 115721 62224936 - 62224944 targetscan
M16 hsa-miR-92b 115713 - 115721 62224936 - 62224944 targetscan
M17 hsa-miR-25 115713 - 115721 62224936 - 62224944 targetscan
M18 hsa-miR-32 115713 - 115721 62224936 - 62224944 targetscan
M19 hsa-miR-363 115713 - 115721 62224936 - 62224944 targetscan
M20 hsa-miR-367 115713 - 115721 62224936 - 62224944 targetscan
M21 hsa-miR-92a 115714 - 115720 62224937 - 62224943 pita
M22 hsa-miR-92b 115714 - 115720 62224937 - 62224943 pita
M23 hsa-miR-363 115714 - 115720 62224937 - 62224943 pita
M24 hsa-miR-367 115714 - 115720 62224937 - 62224943 pita
M25 hsa-miR-25 115714 - 115720 62224937 - 62224943 pita
M26 hsa-miR-554 115733 - 115740 62224917 - 62224924 pita
M27 hsa-miR-216b 115743 - 115764 62224893 - 62224914 miranda
M28 hsa-miR-216b 115757 - 115763 62224894 - 62224900 pita
M29 hsa-miR-301b 115765 - 115789 62224868 - 62224892 miranda
M30 hsa-miR-301a 115765 - 115789 62224868 - 62224892 miranda
M31 hsa-miR-130a 115768 - 115789 62224868 - 62224889 miranda
M32 hsa-miR-130b 115769 - 115789 62224868 - 62224888 miranda
M33 hsa-miR-454 115769 - 115789 62224868 - 62224888 miranda
M34 hsa-miR-130a 115782 - 115788 62224869 - 62224875 pita
M35 hsa-miR-130b 115782 - 115788 62224869 - 62224875 pita
M36 hsa-miR-301a 115782 - 115788 62224869 - 62224875 pita
M37 hsa-miR-301b 115782 - 115788 62224869 - 62224875 pita
M38 hsa-miR-454 115782 - 115788 62224869 - 62224875 pita
M39 hsa-miR-519a 115783 - 115789 62224868 - 62224874 pita
M40 hsa-miR-519b-3p 115783 - 115789 62224868 - 62224874 pita
M41 hsa-miR-519c-3p 115783 - 115789 62224868 - 62224874 pita
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Localization EXONT:000071 Transmembrane_helix 3 50490 50630
Localization EXONT:000064 Nuclear_localization_signal 5 69523 69543
Localization EXONT:000067 Nuclear_export_signal 6 74991 75030
Localization EXONT:000064 Nuclear_localization_signal 7,8 85964 92106
Localization EXONT:000067 Nuclear_export_signal 8 92131 92169
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 3 49080 49163
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 3 49179 49271
Structure EXONT:000024 Compositionally_biased_region_of_peptide 3 49206 49232
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 3 49296 49799
Structure EXONT:000024 Compositionally_biased_region_of_peptide 3 49491 49502
Structure EXONT:000024 Compositionally_biased_region_of_peptide 3 49554 49565
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 3 49818 49928
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 3 50004 50240
Structure EXONT:000071 Transmembrane_helix 3 50490 50630
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 4 68313 68342
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 5 69498 69626
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 5,6 69699 74997
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 6,7 75049 85861
Structure EXONT:000024 Compositionally_biased_region_of_peptide 7 85847 85864
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 9,10,11 102483 110146
Structure EXONT:000024 Compositionally_biased_region_of_peptide 11 110327 110338
PTM EXONT:000164 O4'-phospho-L-tyrosine 3 49305 49307
PTM EXONT:000161 O-phospho-L-serine 3 49350 49352
PTM EXONT:000161 O-phospho-L-serine 3 49563 49565
PTM EXONT:000161 O-phospho-L-serine 3 49572 49577
PTM EXONT:000161 O-phospho-L-serine 3 49587 49589
PTM EXONT:000161 O-phospho-L-serine 3 49599 49601
PTM EXONT:000161 O-phospho-L-serine 3 49611 49613
PTM EXONT:000162 O-phospho-L-threonine 3 49620 49622
PTM EXONT:000161 O-phospho-L-serine 3 49665 49667
PTM EXONT:000180 N-acetylated L-lysine 3 49722 49724
PTM EXONT:000192 N6-acetyl-L-lysine 3 49722 49724
PTM EXONT:000162 O-phospho-L-threonine 3 49725 49727
PTM EXONT:000161 O-phospho-L-serine 3 49737 49739
PTM EXONT:000162 O-phospho-L-threonine 3 49863 49865
PTM EXONT:000161 O-phospho-L-serine 3 49872 49877
PTM EXONT:000162 O-phospho-L-threonine 3 49884 49886
PTM EXONT:000161 O-phospho-L-serine 3 49887 49889
PTM EXONT:000161 O-phospho-L-serine 3 49893 49895
PTM EXONT:000161 O-phospho-L-serine 3 49962 49964
PTM EXONT:000164 O4'-phospho-L-tyrosine 3 49974 49976
PTM EXONT:000161 O-phospho-L-serine 3 50022 50024
PTM EXONT:000161 O-phospho-L-serine 3 50046 50048
PTM EXONT:000992 N4-(N-acetylamino)glucosyl-L-asparagine 3 50067 50069
PTM EXONT:000161 O-phospho-L-serine 3 50073 50075
PTM EXONT:000161 O-phospho-L-serine 3 50397 50399
PTM EXONT:000164 O4'-phospho-L-tyrosine 4 68382 68384
PTM EXONT:000161 O-phospho-L-serine 5 69711 69713
PTM EXONT:000161 O-phospho-L-serine 6 74899 74901
PTM EXONT:000161 O-phospho-L-serine 6 74917 74919
PTM EXONT:000162 O-phospho-L-threonine 6 74929 74931
PTM EXONT:000161 O-phospho-L-serine 6 74935 74937
PTM EXONT:000161 O-phospho-L-serine 6 74947 74949
PTM EXONT:000161 O-phospho-L-serine 6 74956 74958
PTM EXONT:000161 O-phospho-L-serine 6 74974 74976
PTM EXONT:000161 O-phospho-L-serine 6 75106 75111
PTM EXONT:000162 O-phospho-L-threonine 11 110228 110230
Unclassified EXONT:002918 Pleckstrin homology domain 3,4,5 50712 69695
Unclassified EXONT:008664 Domain of unknown function DUF2404 7,8,9 85874 102434
Gene TEX2
Gene TEX2 Gene TEX2
Gene TEX2 Gene TEX2
Gene TEX2 Gene TEX2
Gene TEX2 Gene TEX2
Gene TEX2 Gene TEX2
Gene TEX2 Gene TEX2
Gene TEX2 Gene TEX2
Gene TEX2 Gene TEX2

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Extended region