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Previous gene FasterDB identifier: 19072 - Tex2 (Def-5, Taz4) testis expressed gene 2 Gene Next gene
Gene Close
Symbol Tex2
Synonyms Def-5, Taz4
Description testis expressed gene 2 Gene
EnsEMBL link ENSMUSG00000040548
Chromosome 11 - reverse strand
Chromosomal location
(UCSC link)		 106363448 - 106474254 (110807bp)
Sequence sequence
Associated transcripts AK168397 AK129434 NM_198292 AK029537 BC057406 X96704 AK204627
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 10 6 BC057406
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 106474254 AK168397
P2 2 33827 106440428 AK029537
Protein prediction Close
 Transcript name   Sequence 
AK168397 sequence
AK129434 sequence
NM_198292 sequence
AK029537 sequence
BC057406 sequence
X96704 sequence
AK204627 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 6 68883 106405372 TATAAA no AK029537 Full_length
PA2 9 92985 106381270 no AK168397 Full_length
PA3 13 110604 106363651 ATTAAA no AV367723 3prime_est
PA4 13 110604 106363651 ATTAAA no BB094523 3prime_est
PA5 13 110604 106363651 ATTAAA no BB094924 3prime_est
PA6 13 110604 106363651 ATTAAA no BB551248 3prime_est
PA7 13 110604 106363651 ATTAAA no BB763860 3prime_est
PA8 13 110604 106363651 ATTAAA no BB765165 3prime_est
PA9 13 110604 106363651 ATTAAA no BB769855 3prime_est
PA10 13 110604 106363651 ATTAAA no BB779359 3prime_est
PA11 13 110604 106363651 ATTAAA no BB780076 3prime_est
PA12 13 110604 106363651 ATTAAA no BB792360 3prime_est
PA13 13 110604 106363651 ATTAAA no BB818157 3prime_est
PA14 13 110604 106363651 ATTAAA yes BF226199 3prime_est
PA15 13 110604 106363651 ATTAAA yes BM898685 3prime_est
PA16 13 110604 106363651 ATTAAA no BY629067 3prime_est
PA17 13 110604 106363651 ATTAAA no CJ280048 3prime_est
PA18 13 110604 106363651 ATTAAA no CJ280785 3prime_est
PA19 13 110604 106363651 ATTAAA no CJ281773 3prime_est
PA20 13 110604 106363651 ATTAAA no CJ289023 3prime_est
PA21 13 110604 106363651 ATTAAA no CJ290349 3prime_est
PA22 13 110604 106363651 ATTAAA yes CO043046 3prime_est
PA23 13 110807 106363448 AATAAA no NM_198292 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 2 AK168397
AK129434
NM_198292
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 5.97 no GGGgtgagc
S2 5' (donor) 2 10.47 no TTGgtaagt
S3 3' (acceptor) 2 -27.51 no agtccccttatgtcacagctCAG
S4 5' (donor) 3 9.79 no AAGgtatgt
S5 3' (acceptor) 3 10.56 no cttcttgctgtttttttcagAGC
S6 5' (donor) 4 11 no AAGgtaagt
S7 3' (acceptor) 4 5.64 no tagaggcctttctccaccagGGA
S8 5' (donor) 5 8.55 no CAGgtaata
S9 3' (acceptor) 5 13.12 no tcatctgcctctctccgtagATT
S10 5' (donor) 6 9.06 no AAGgtaaag
S11 3' (acceptor) 6 6.48 no agctatcgtttcttacccagGGC
S12 5' (donor) 7 7.22 no AAGgtatca
S13 3' (acceptor) 7 7.71 no ggtctcttttcttttgccagTTG
S14 5' (donor) 8 10.19 no AAGgtaacg
S15 3' (acceptor) 8 12.01 no tgtttgtttctttcctgcagCTC
S16 5' (donor) 9 9.16 no AGGgtaagg
S17 3' (acceptor) 9 10.42 no tttgttaactgtctctctagGAC
S18 5' (donor) 10 9.25 no AGGgtgagt
S19 3' (acceptor) 10 8.43 no gtgacttcctttctatgcagTTG
S20 3' (acceptor) 10 2.93 yes tcctttctatgcagttgcagGCC
S21 5' (donor) 11 8.27 no ATGgtgcgt
S22 3' (acceptor) 11 7.1 no tctgcattctgtatttgaagGTA
S23 5' (donor) 12 8.59 no CAGgtaaaa
S24 3' (acceptor) 12 6.57 no taactgtcttcttcacaaagGTA
S25 3' (acceptor) 13 11.02 no cctctaatctctccctacagAAA
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
17088 1 1
17088 3 3
17088 4 4
17088 5 5
17088 6 6
17088 7 7
17088 8 8
17088 9 9
17088 10 10
17088 11 11
17088 12 12
17088 13 13
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 1
2 1
 Transcription termination & last exon(s) 
6 1
9 1
13 21
 Exon skipping 
2 3
 Alternative 3' splice sites 
10 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
3 Expression Expression
4 Expression Expression
5 Expression Expression
6 Expression Expression
7 Expression Expression
8 Expression Expression
9 Expression Expression
10 Expression Expression
11 Expression Expression
12 Expression Expression
13 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 83 106474172-106474254 83 sequence download
1 Intron 84 - 33826 106440429-106474171 33743 sequence -
2 Exon 33827 - 33906 106440349-106440428 80 sequence download
2 Intron 33907 - 44313 106429942-106440348 10407 sequence -
3 Exon 44314 - 45976 106428279-106429941 1663 sequence download
3 Intron 45977 - 64026 106410229-106428278 18050 sequence -
4 Exon 64027 - 64227 106410028-106410228 201 sequence download
4 Intron 64228 - 65937 106408318-106410027 1710 sequence -
5 Exon 65938 - 66277 106407978-106408317 340 sequence download
5 Intron 66278 - 68521 106405734-106407977 2244 sequence -
6 Exon 68522 - 68769 106405486-106405733 248 sequence download
6 Intron 68770 - 78923 106395332-106405485 10154 sequence -
7 Exon 78924 - 79070 106395185-106395331 147 sequence download
7 Intron 79071 - 83579 106390676-106395184 4509 sequence -
8 Exon 83580 - 83679 106390576-106390675 100 sequence download
8 Intron 83680 - 92926 106381329-106390575 9247 sequence -
9 Exon 92927 - 93059 106381196-106381328 133 sequence download
9 Intron 93060 - 99228 106375027-106381195 6169 sequence -
10 Exon 99229 - 99354 106374901-106375026 126 sequence download
10 Intron 99355 - 100829 106373426-106374900 1475 sequence -
11 Exon 100830 - 101039 106373216-106373425 210 sequence download
11 Intron 101040 - 105953 106368302-106373215 4914 sequence -
12 Exon 105954 - 106074 106368181-106368301 121 sequence download
12 Intron 106075 - 109222 106365033-106368180 3148 sequence -
13 Exon 109223 - 110807 106363448-106365032 1585 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2 
 Supporting GenBank
accession identifers 		 AK029537
 AK168397
AK129434
NM_198292
 Length  105 743
 Number of ATGs in frame  0 5
 Total number of ATGs  1 9
 Number of GTGs in frame  1 16
 Total number of GTGs  4 30
 Number of CTGs in frame  0 4
 Total number of CTGs  2 12
 Number of micro ORFs in frame  0 0
 Total number of micro ORFs  1 2
 GC percentage  60 58
 Number of pyrimidine tracks  0 8
Close 3' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 AK168397
 AK029537
 NM_198292
AK129434
BC057406
 Length  1618 655 1462
 Number of ATGs in frame  1 1 4
 Total number of ATGs  29 11 24
 Number of GTGs in frame  6 1 17
 Total number of GTGs  38 16 40
 Number of CTGs in frame  4 3 10
 Total number of CTGs  25 11 30
 GC percentage  52 57 42
 Number of pyrimidine tracks  4 2 14
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-206 109359 - 109366 106364889 - 106364896 pictar
M2 mmu-miR-1 109359 - 109366 106364889 - 106364896 pictar
M3 mmu-miR-298 109475 - 109482 106364773 - 106364780 pictar
M4 mmu-miR-298 109476 - 109482 106364773 - 106364779 pita
M5 mmu-miR-206 109491 - 109498 106364757 - 106364764 pictar
M6 mmu-miR-1 109491 - 109498 106364757 - 106364764 pictar
M7 mmu-miR-667 109502 - 109508 106364747 - 106364753 pita
M8 mmu-miR-489 109503 - 109510 106364745 - 106364752 pita
M9 mmu-miR-425 109504 - 109510 106364745 - 106364751 pita
M10 mmu-miR-379 109629 - 109648 106364607 - 106364626 miranda
M11 mmu-miR-490 109632 - 109653 106364602 - 106364623 miranda
M12 mmu-miR-298 109705 - 109712 106364543 - 106364550 pictar
M13 mmu-miR-302b 109867 - 109891 106364364 - 106364388 miranda
M14 mmu-miR-302d 109867 - 109891 106364364 - 106364388 miranda
M15 mmu-miR-302a 109867 - 109891 106364364 - 106364388 miranda
M16 mmu-miR-294 109868 - 109891 106364364 - 106364387 miranda
M17 mmu-miR-93 109869 - 109892 106364363 - 106364386 miranda
M18 mmu-miR-137 109902 - 109926 106364329 - 106364353 miranda
M19 mmu-miR-686 109915 - 109922 106364333 - 106364340 pita
M20 mmu-miR-135b 109924 - 109931 106364324 - 106364331 pictar
M21 mmu-miR-135a 109924 - 109931 106364324 - 106364331 pictar
M22 mmu-miR-128 110083 - 110089 106364166 - 106364172 pita
M23 mmu-miR-135b 110143 - 110150 106364105 - 106364112 pictar
M24 mmu-miR-302c 110263 - 110269 106363986 - 106363992 pita
M25 mmu-miR-182 110304 - 110311 106363944 - 106363951 pictar
M26 mmu-miR-182 110304 - 110311 106363944 - 106363951 targetscan
M27 mmu-miR-182 110305 - 110311 106363944 - 106363950 pita
M28 mmu-miR-543 110322 - 110342 106363913 - 106363933 miranda
M29 mmu-miR-543 110335 - 110341 106363914 - 106363920 pita
M30 mmu-miR-1192 110392 - 110413 106363842 - 106363863 miranda
M31 mmu-miR-495 110393 - 110413 106363842 - 106363862 miranda
M32 mmu-miR-495 110405 - 110412 106363843 - 106363850 pita
M33 mmu-miR-1192 110405 - 110412 106363843 - 106363850 pita
M34 mmu-miR-693-3p 110414 - 110420 106363835 - 106363841 pita
M35 mmu-miR-26b 110423 - 110445 106363810 - 106363832 miranda
M36 mmu-miR-361 110434 - 110458 106363797 - 106363821 miranda
M37 mmu-miR-361 110450 - 110457 106363798 - 106363805 pita
M38 mmu-miR-18b 110484 - 110507 106363748 - 106363771 miranda
M39 mmu-miR-18a 110484 - 110507 106363748 - 106363771 miranda
M40 mmu-miR-18a 110499 - 110506 106363749 - 106363756 targetscan
M41 mmu-miR-18b 110499 - 110506 106363749 - 106363756 targetscan
M42 mmu-miR-18a 110500 - 110506 106363749 - 106363755 pita
M43 mmu-miR-18b 110500 - 110506 106363749 - 106363755 pita
M44 mmu-miR-206 110583 - 110605 106363650 - 106363672 miranda
M45 mmu-miR-1 110583 - 110605 106363650 - 106363672 miranda
M46 mmu-miR-206 110598 - 110605 106363650 - 106363657 pictar
M47 mmu-miR-1 110598 - 110605 106363650 - 106363657 pictar
Group 2
M1 mmu-miR-539 110609 - 110630 106363625 - 106363646 miranda
M2 mmu-miR-299 110648 - 110654 106363601 - 106363607 pita
M3 mmu-miR-431 110678 - 110698 106363557 - 106363577 miranda
M4 mmu-miR-511 110687 - 110693 106363562 - 106363568 pita
M5 mmu-miR-431 110691 - 110697 106363558 - 106363564 pita
M6 mmu-miR-878-5p 110696 - 110702 106363553 - 106363559 pita
M7 mmu-miR-300 110762 - 110768 106363487 - 106363493 pita
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
No data
Gene Tex2

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Extended region