Gene | ![]() |
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---|---|---|---|
Symbol | DDX5 | ||
Synonyms | G17P1, HLR1, p68 | ||
Description | DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 | ||
EnsEMBL link | ENSG00000108654 | ||
Chromosome | 17 - reverse strand | ||
Chromosomal location (UCSC link) |
62494374 - 62502484 (8111bp) | ||
Sequence | sequence | ||
Associated transcripts | NM_004396 X52104 BX571764 AK297753 AK297905 AK297192 X15729 AB209919 BC016027 AB451257 BT006943 AB451382 AK310318 CR607012 AK055995 |
Alternative 3' splice site (acceptor) | ![]() |
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---|---|---|---|---|
Identifier | Position | Distance (bp) | Transcript | |
ASS1 | 6 | 52 | AK297192 |
Alternative 5' splice sites (donor) | ![]() |
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---|---|---|---|---|
Identifier | Position | Distance (bp) | Transcript | |
ASS1 | 4 | -51 | AK297192 |
|
ASS2 | 3 | -22 | NM_004396 X52104 BX571764 AK297753 AK297192 X15729 AB209919 BC016027 AB451257 BT006943 AB451382 AK310318 |
Exon deletions | ![]() |
|
---|---|---|
Identifier | Position | Transcript |
ED1 | 3 | AK297753 |
Transcription start sites | ![]() |
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---|---|---|---|---|
Identifier | Position | Gene coordinates | Chromosomal coordinates | Transcript |
P1 | 1 | 1 | 62502484 | NM_004396 |
P2 | 1 | 78 | 62502407 | AK297753 AK297905 |
P3 | 1 | 79 | 62502406 | AK297192 |
P4 | 2 | 534 | 62501951 | AK310318 |
P5 | 13 | 4878 | 62497607 | AK055995 |
Protein prediction | ![]() |
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Transcript name | Sequence |
NM_004396 | sequence |
X52104 | sequence |
BX571764 | sequence |
AK297753 | sequence |
AK297905 | sequence |
AK297192 | sequence |
X15729 | sequence |
AB209919 | sequence |
BC016027 | sequence |
AB451257 | sequence |
BT006943 | sequence |
AB451382 | sequence |
AK310318 | sequence |
CR607012 | sequence |
AK055995 | sequence |
Polyadenylation | ![]() |
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Identifier | Position | Gene coordinates of cleavage site | Chromosomal coordinates of cleavage site | Pattern | PolyA tail | Accession number | Type |
PA1 | 14 | 6453 | 62496032 | no | AK310318 | Full_length | |
PA2 | 14 | 6576 | 62495909 | no | AK297753 | Full_length | |
PA3 | 14 | 6745 | 62495740 | AATAAA | no | AK297192 | Full_length |
PA4 | 14 | 6745 | 62495740 | AATAAA | no | AK055995 | Full_length |
PA5 | 14 | 8111 | 62494374 | AATAAA | yes | NM_004396 | Cdna |
Exon skipping | ![]() |
|
---|---|---|
Identifier | Position | Transcript |
ES1 | 2 | NM_004396 X52104 BX571764 AK297753 AK297905 AK297192 X15729 AB209919 BC016027 AB451257 BT006943 AB451382 |
ES2 | 4 | AK297905 |
ES3 | 5 | AK297905 AK297192 |
Conserved exons | ![]() |
|
---|---|---|
Gene identifier mouse | Position human | Position mouse |
19266 | 1 | 2 |
19266 | 3 | 3 |
19266 | 4 | 4 |
19266 | 5 | 5 |
19266 | 6 | 6 |
19266 | 7 | 7 |
19266 | 8 | 8 |
19266 | 9 | 9 |
19266 | 10 | 10 |
19266 | 11 | 11 |
19266 | 12 | 12 |
19266 | 13 | 13 |
Report | ![]() |
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Exon | Number of supporting transcripts |
Transcription initiation & first exon(s) | |
1 | 3 |
2 | 1 |
13 | 1 |
Transcription termination & last exon(s) | |
14 | 5 |
Exon skipping | |
2 | 12 |
4 | 1 |
5 | 2 |
Alternative 3' splice sites | |
6 | 1 |
Alternative 5' splice sites | |
3 | 1 |
4 | 1 |
Exon deletions | |
3 | 1 |
Intron retentions | |
12 | 2 |
Expression | ![]() |
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Exon position | Tissues | Cell lines | Cancer cell lines |
1 | Expression | Expression | Expression |
2 | Expression | Expression | Expression |
3 | Expression | Expression | Expression |
4 | Expression | Expression | Expression |
5 | Expression | Expression | Expression |
6 | Expression | Expression | Expression |
7 | Expression | Expression | Expression |
8 | Expression | Expression | Expression |
9 | Expression | Expression | Expression |
10 | Expression | Expression | Expression |
11 | Expression | Expression | Expression |
12 | Expression | Expression | Expression |
13 | Expression | Expression | Expression |
14 | Expression | Expression | Expression |
Exon-Intron | ![]() |
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---|---|---|---|---|---|---|
Position | Type | Gene coordinates | Chromosomal coordinates | Length | Sequence | Features |
1 | Exon | 1 - 291 | 62502194-62502484 | 291 | sequence | download |
1 | Intron | 292 - 533 | 62501952-62502193 | 242 | sequence | - |
2 | Exon | 534 - 621 | 62501864-62501951 | 88 | sequence | download |
2 | Intron | 622 - 1524 | 62500961-62501863 | 903 | sequence | - |
3 | Exon | 1525 - 1712 | 62500773-62500960 | 188 | sequence | download |
3 | Intron | 1713 - 2048 | 62500437-62500772 | 336 | sequence | - |
4 | Exon | 2049 - 2145 | 62500340-62500436 | 97 | sequence | download |
4 | Intron | 2146 - 2250 | 62500235-62500339 | 105 | sequence | - |
5 | Exon | 2251 - 2384 | 62500101-62500234 | 134 | sequence | download |
5 | Intron | 2385 - 2498 | 62499987-62500100 | 114 | sequence | - |
6 | Exon | 2499 - 2564 | 62499921-62499986 | 66 | sequence | download |
6 | Intron | 2565 - 2795 | 62499690-62499920 | 231 | sequence | - |
7 | Exon | 2796 - 2937 | 62499548-62499689 | 142 | sequence | download |
7 | Intron | 2938 - 3018 | 62499467-62499547 | 81 | sequence | - |
8 | Exon | 3019 - 3179 | 62499306-62499466 | 161 | sequence | download |
8 | Intron | 3180 - 3268 | 62499217-62499305 | 89 | sequence | - |
9 | Exon | 3269 - 3441 | 62499044-62499216 | 173 | sequence | download |
9 | Intron | 3442 - 3817 | 62498668-62499043 | 376 | sequence | - |
10 | Exon | 3818 - 3928 | 62498557-62498667 | 111 | sequence | download |
10 | Intron | 3929 - 4143 | 62498342-62498556 | 215 | sequence | - |
11 | Exon | 4144 - 4205 | 62498280-62498341 | 62 | sequence | download |
11 | Intron | 4206 - 4297 | 62498188-62498279 | 92 | sequence | - |
12 | Exon | 4298 - 4357 | 62498128-62498187 | 60 | sequence | download |
12 | Intron | 4358 - 5593 | 62496892-62498127 | 1236 | sequence | - |
13 | Exon | 5594 - 5818 | 62496667-62496891 | 225 | sequence | download |
13 | Intron | 5819 - 6040 | 62496445-62496666 | 222 | sequence | - |
14 | Exon | 6041 - 8111 | 62494374-62496444 | 2071 | sequence | download |
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