Gene | |||
---|---|---|---|
Symbol | Ddx5 | ||
Synonyms | Hlr1, p68 | ||
Description | DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 Gene | ||
EnsEMBL link | ENSMUSG00000020719 | ||
Chromosome | 11 - reverse strand | ||
Chromosomal location (UCSC link) |
106641670 - 106650181 (8512bp) | ||
Sequence | sequence | ||
Associated transcripts | AK166698 AK132779 AK076018 AK088887 AK166045 AK135173 AK129022 AK044792 NM_007840 BC062916 X65627 BC046554 XM_003085779 XM_003085402 BC086320 BC129874 BC129873 AK203495 BC108369 AK219348 AK013106 BC009142 AK184106 |
Alternative 3' splice site (acceptor) | ||||
---|---|---|---|---|
Identifier | Position | Distance (bp) | Transcript | |
ASS1 | 12 | 9 | AK166698 AK132779 AK088887 AK166045 AK135173 AK129022 AK044792 NM_007840 BC062916 X65627 BC046554 XM_003085779 XM_003085402 BC086320 BC129874 BC129873 BC108369 AK013106 |
Intron retentions | ||
---|---|---|
Identifier | Position | Transcript |
IR1 | 12 | AK129022 |
Transcription start sites | ||||
---|---|---|---|---|
Identifier | Position | Gene coordinates | Chromosomal coordinates | Transcript |
P1 | 1 | 1 | 106650181 | AK166698 |
P2 | 2 | 327 | 106649855 | AK132779 |
P3 | 2 | 371 | 106649811 | AK076018 |
P4 | 2 | 372 | 106649810 | AK088887 AK166045 AK135173 |
P5 | 2 | 374 | 106649808 | AK044792 |
P6 | 9 | 3939 | 106646243 | AK013106 |
P7 | 13 | 5468 | 106644714 | BC009142 |
Protein prediction | |
---|---|
Transcript name | Sequence |
AK166698 | sequence |
AK132779 | sequence |
AK076018 | sequence |
AK088887 | sequence |
AK166045 | sequence |
AK135173 | sequence |
AK129022 | sequence |
AK044792 | sequence |
NM_007840 | sequence |
BC062916 | sequence |
X65627 | sequence |
BC046554 | sequence |
XM_003085779 | sequence |
XM_003085402 | sequence |
BC086320 | sequence |
BC129874 | sequence |
BC129873 | sequence |
AK203495 | sequence |
BC108369 | sequence |
AK219348 | sequence |
AK013106 | sequence |
BC009142 | sequence |
AK184106 | sequence |
Polyadenylation | |||||||
---|---|---|---|---|---|---|---|
Identifier | Position | Gene coordinates of cleavage site | Chromosomal coordinates of cleavage site | Pattern | PolyA tail | Accession number | Type |
PA1 | 14 | 7320 | 106642862 | AATAAA | no | AK166698 | Full_length |
PA2 | 14 | 7320 | 106642862 | AATAAA | no | AK132779 | Full_length |
PA3 | 14 | 7320 | 106642862 | AATAAA | no | AK076018 | Full_length |
PA4 | 14 | 7320 | 106642862 | AATAAA | no | AK088887 | Full_length |
PA5 | 14 | 7320 | 106642862 | AATAAA | no | AK044792 | Full_length |
PA6 | 14 | 7320 | 106642862 | AATAAA | no | AK013106 | Full_length |
PA7 | 14 | 8512 | 106641670 | AATAAA | no | NM_007840 | Cdna |
PA8 | 14 | 8512 | 106641670 | AATAAA | yes | BC062916 | Cdna |
PA9 | 14 | 8512 | 106641670 | AATAAA | no | AK166045 | Full_length |
PA10 | 14 | 8512 | 106641670 | AATAAA | no | AK135173 | Full_length |
Conserved exons | ||
---|---|---|
Gene identifier human | Position mouse | Position human |
17183 | 2 | 1 |
17183 | 3 | 3 |
17183 | 4 | 4 |
17183 | 5 | 5 |
17183 | 6 | 6 |
17183 | 7 | 7 |
17183 | 8 | 8 |
17183 | 9 | 9 |
17183 | 10 | 10 |
17183 | 11 | 11 |
17183 | 12 | 12 |
17183 | 13 | 13 |
Report | |
---|---|
Exon | Number of supporting transcripts |
Transcription initiation & first exon(s) | |
1 | 1 |
2 | 4 |
9 | 1 |
13 | 1 |
Transcription termination & last exon(s) | |
14 | 10 |
Alternative 3' splice sites | |
12 | 1 |
Intron retentions | |
12 | 1 |
Expression | ||
---|---|---|
Exon position | Tissues | Cell lines |
1 | Expression | Expression |
2 | Expression | Expression |
3 | Expression | Expression |
4 | Expression | Expression |
5 | Expression | Expression |
6 | Expression | Expression |
7 | Expression | Expression |
8 | Expression | Expression |
9 | Expression | Expression |
10 | Expression | Expression |
11 | Expression | Expression |
12 | Expression | Expression |
13 | Expression | Expression |
14 | Expression | Expression |
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