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Previous gene FasterDB identifier: 19266 - Ddx5 (Hlr1, p68) DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 Gene Next gene
Gene Close
Symbol Ddx5
Synonyms Hlr1, p68
Description DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 Gene
EnsEMBL link ENSMUSG00000020719
Chromosome 11 - reverse strand
Chromosomal location
(UCSC link)
106641670 - 106650181 (8512bp)
Sequence sequence
Associated transcripts AK166698 AK132779 AK076018 AK088887 AK166045 AK135173 AK129022 AK044792 NM_007840 BC062916 X65627 BC046554 XM_003085779 XM_003085402 BC086320 BC129874 BC129873 AK203495 BC108369 AK219348 AK013106 BC009142 AK184106
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 12 9 AK166698
AK132779
AK088887
AK166045
AK135173
AK129022
AK044792
NM_007840
BC062916
X65627
BC046554
XM_003085779
XM_003085402
BC086320
BC129874
BC129873
BC108369
AK013106
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
IR1 12 AK129022
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 106650181 AK166698
P2 2 327 106649855 AK132779
P3 2 371 106649811 AK076018
P4 2 372 106649810 AK088887
AK166045
AK135173
P5 2 374 106649808 AK044792
P6 9 3939 106646243 AK013106
P7 13 5468 106644714 BC009142
Protein prediction Close
 Transcript name   Sequence 
AK166698 sequence
AK132779 sequence
AK076018 sequence
AK088887 sequence
AK166045 sequence
AK135173 sequence
AK129022 sequence
AK044792 sequence
NM_007840 sequence
BC062916 sequence
X65627 sequence
BC046554 sequence
XM_003085779 sequence
XM_003085402 sequence
BC086320 sequence
BC129874 sequence
BC129873 sequence
AK203495 sequence
BC108369 sequence
AK219348 sequence
AK013106 sequence
BC009142 sequence
AK184106 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 14 7320 106642862 AATAAA no AK166698 Full_length
PA2 14 7320 106642862 AATAAA no AK132779 Full_length
PA3 14 7320 106642862 AATAAA no AK076018 Full_length
PA4 14 7320 106642862 AATAAA no AK088887 Full_length
PA5 14 7320 106642862 AATAAA no AK044792 Full_length
PA6 14 7320 106642862 AATAAA no AK013106 Full_length
PA7 14 8512 106641670 AATAAA no NM_007840 Cdna
PA8 14 8512 106641670 AATAAA yes BC062916 Cdna
PA9 14 8512 106641670 AATAAA no AK166045 Full_length
PA10 14 8512 106641670 AATAAA no AK135173 Full_length

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
No data
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 -0.92 no CGAgtaata
S2 5' (donor) 2 9.25 no AGGgtgagt
S3 3' (acceptor) 2 9.11 no atcggtccttgccctcgcagCTC
S4 5' (donor) 3 7.39 no GCAgtgagt
S5 3' (acceptor) 3 9.86 no tttgttttgtgtgtgtgtagGTT
S6 5' (donor) 4 9.68 no CTGgtaagg
S7 3' (acceptor) 4 5.72 no tgagataatttgtttttcagCAA
S8 5' (donor) 5 7.96 no TCTgtaagt
S9 3' (acceptor) 5 6.18 no aatggtattgttggttgcagCGA
S10 5' (donor) 6 8.54 no ATTgtaagt
S11 3' (acceptor) 6 6.68 no ttatttttactcttcaatagTAT
S12 5' (donor) 7 6.14 no GAGgtgtgt
S13 3' (acceptor) 7 7.52 no tttttgtttttcaaacttagTGC
S14 5' (donor) 8 9.35 no AGAgtaagt
S15 3' (acceptor) 8 6.39 no ttttatttatttaattaaagGTG
S16 5' (donor) 9 8.4 no AAAgtgagt
S17 3' (acceptor) 9 5.88 no ttgcttccttaaatcttcagCCT
S18 5' (donor) 10 7.43 no TGGgtatgt
S19 3' (acceptor) 10 8.99 no gagtttttcttcatctttagGCT
S20 5' (donor) 11 8.35 no ATGgtatgt
S21 3' (acceptor) 11 5.83 no taatttaattcttggtatagGTG
S22 5' (donor) 12 5.5 no TAGgttagt
S23 3' (acceptor) 12 -5.46 no ttaatgattattcatggttgTCT
S24 3' (acceptor) 12 6.88 yes attcatggttgtctttatagAAT
S25 5' (donor) 13 11.08 no CAGgtaagg
S26 3' (acceptor) 13 6.21 no cacactgcaacaccttacagATG
S27 3' (acceptor) 14 10.99 no tccacttactttcttgacagGTC
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
17183 2 1
17183 3 3
17183 4 4
17183 5 5
17183 6 6
17183 7 7
17183 8 8
17183 9 9
17183 10 10
17183 11 11
17183 12 12
17183 13 13
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 1
2 4
9 1
13 1
 Transcription termination & last exon(s) 
14 10
 Alternative 3' splice sites 
12 1
 Intron retentions 
12 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
3 Expression Expression
4 Expression Expression
5 Expression Expression
6 Expression Expression
7 Expression Expression
8 Expression Expression
9 Expression Expression
10 Expression Expression
11 Expression Expression
12 Expression Expression
13 Expression Expression
14 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 169 106650013-106650181 169 sequence download
1 Intron 170 - 408 106649774-106650012 239 sequence -
2 Exon 409 - 595 106649587-106649773 187 sequence download
2 Intron 596 - 1793 106648389-106649586 1198 sequence -
3 Exon 1794 - 1959 106648223-106648388 166 sequence download
3 Intron 1960 - 2323 106647859-106648222 364 sequence -
4 Exon 2324 - 2420 106647762-106647858 97 sequence download
4 Intron 2421 - 2508 106647674-106647761 88 sequence -
5 Exon 2509 - 2642 106647540-106647673 134 sequence download
5 Intron 2643 - 2735 106647447-106647539 93 sequence -
6 Exon 2736 - 2801 106647381-106647446 66 sequence download
6 Intron 2802 - 3331 106646851-106647380 530 sequence -
7 Exon 3332 - 3473 106646709-106646850 142 sequence download
7 Intron 3474 - 3571 106646611-106646708 98 sequence -
8 Exon 3572 - 3732 106646450-106646610 161 sequence download
8 Intron 3733 - 3815 106646367-106646449 83 sequence -
9 Exon 3816 - 3988 106646194-106646366 173 sequence download
9 Intron 3989 - 4343 106645839-106646193 355 sequence -
10 Exon 4344 - 4454 106645728-106645838 111 sequence download
10 Intron 4455 - 4705 106645477-106645727 251 sequence -
11 Exon 4706 - 4767 106645415-106645476 62 sequence download
11 Intron 4768 - 4840 106645342-106645414 73 sequence -
12 Exon 4841 - 4909 106645273-106645341 69 sequence download
12 Intron 4910 - 6174 106644008-106645272 1265 sequence -
13 Exon 6175 - 6399 106643783-106644007 225 sequence download
13 Intron 6400 - 6611 106643571-106643782 212 sequence -
14 Exon 6612 - 8512 106641670-106643570 1901 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4   UTR 5   UTR 6   UTR 7 
 Supporting GenBank
accession identifers 
XM_003085779
XM_003085402
AK088887
AK166045
AK135173
AK166698
AK132779
AK044792
AK076018
AK129022
NM_007840
BC062916
X65627
BC046554
BC086320
BC129874
BC129873
BC108369
BC009142
 Length  143 179 311 225 178 1259 955
 Number of ATGs in frame  1 0 0 0 0 5 5
 Total number of ATGs  1 0 1 0 0 22 15
 Number of GTGs in frame  1 0 1 0 0 10 7
 Total number of GTGs  3 2 6 3 2 32 17
 Number of CTGs in frame  0 0 2 0 0 6 8
 Total number of CTGs  1 1 7 1 1 23 19
 Number of micro ORFs in frame  1 0 0 0 0 1 5
 Total number of micro ORFs  1 0 1 0 0 5 9
 GC percentage  65 68 64 68 67 47 43
 Number of pyrimidine tracks  3 4 3 4 4 4 8
Close 3' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 
AK129022
AK044792
X65627
AK013106
AK166698
AK132779
AK076018
AK088887
BC046554
BC086320
BC108369
BC009142
XM_003085779
XM_003085402
BC129874
BC129873
AK135173
AK166045
NM_007840
BC062916
 Length  2203 1495 1494
 Number of ATGs in frame  22 13 9
 Total number of ATGs  51 35 35
 Number of GTGs in frame  19 6 8
 Total number of GTGs  44 20 20
 Number of CTGs in frame  17 14 12
 Total number of CTGs  38 26 26
 GC percentage  41 35 35
 Number of pyrimidine tracks  12 11 11
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-882 5180 - 5200 106644982 - 106645002 miranda
M2 mmu-miR-185 5182 - 5200 106644982 - 106645000 miranda
M3 mmu-miR-34a 5214 - 5238 106644944 - 106644968 miranda
M4 mmu-miR-34c 5214 - 5238 106644944 - 106644968 miranda
M5 mmu-miR-34b-5p 5214 - 5238 106644944 - 106644968 miranda
M6 mmu-miR-449a 5217 - 5238 106644944 - 106644965 miranda
M7 mmu-miR-449b 5217 - 5238 106644944 - 106644965 miranda
M8 mmu-miR-449c 5218 - 5238 106644944 - 106644964 miranda
M9 mmu-miR-320 5243 - 5264 106644918 - 106644939 miranda
M10 mmu-miR-542-3p 5283 - 5304 106644878 - 106644899 miranda
M11 mmu-miR-128 5288 - 5308 106644874 - 106644894 miranda
M12 mmu-miR-181a 5325 - 5348 106644834 - 106644857 miranda
M13 mmu-miR-136 5385 - 5408 106644774 - 106644797 miranda
M14 mmu-miR-302d 5393 - 5418 106644764 - 106644789 miranda
M15 mmu-miR-302b 5394 - 5418 106644764 - 106644788 miranda
M16 mmu-miR-320 5398 - 5419 106644763 - 106644784 miranda
Group 2
M1 mmu-miR-340-5p 7044 - 7068 106643114 - 106643138 miranda
M2 mmu-miR-291b-3p 7056 - 7063 106643119 - 106643126 pictar
M3 mmu-miR-340-5p 7060 - 7067 106643115 - 106643122 targetscan
M4 mmu-miR-340-5p 7061 - 7067 106643115 - 106643121 pita
M5 mmu-miR-338-5p 7065 - 7071 106643111 - 106643117 pita
M6 mmu-miR-329 7069 - 7076 106643106 - 106643113 pictar
M7 mmu-miR-200a 7070 - 7077 106643105 - 106643112 pictar
M8 mmu-miR-141 7070 - 7077 106643105 - 106643112 pictar
M9 mmu-miR-544 7098 - 7119 106643063 - 106643084 miranda
M10 mmu-miR-33 7109 - 7116 106643066 - 106643073 pictar
M11 mmu-miR-544 7111 - 7119 106643063 - 106643071 targetscan
M12 mmu-miR-544 7111 - 7118 106643064 - 106643071 pita
M13 mmu-miR-682 7120 - 7127 106643055 - 106643062 pita
M14 mmu-miR-17-3p 7121 - 7128 106643054 - 106643061 pictar
M15 mmu-miR-33 7125 - 7132 106643050 - 106643057 pictar
M16 mmu-miR-20b 7130 - 7154 106643028 - 106643052 miranda
M17 mmu-miR-106a 7130 - 7154 106643028 - 106643052 miranda
M18 mmu-miR-20a 7130 - 7154 106643028 - 106643052 miranda
M19 mmu-miR-17 7130 - 7154 106643028 - 106643052 miranda
M20 mmu-miR-93 7132 - 7154 106643028 - 106643050 miranda
M21 mmu-miR-106b 7133 - 7154 106643028 - 106643049 miranda
M22 mmu-miR-224 7133 - 7153 106643029 - 106643049 miranda
M23 mmu-miR-20a 7146 - 7153 106643029 - 106643036 pictar
M24 mmu-miR-20b 7146 - 7153 106643029 - 106643036 targetscan
M25 mmu-miR-295 7146 - 7153 106643029 - 106643036 pictar
M26 mmu-miR-17-5p 7146 - 7153 106643029 - 106643036 pictar
M27 mmu-miR-93 7146 - 7153 106643029 - 106643036 targetscan
M28 mmu-miR-294 7146 - 7153 106643029 - 106643036 pictar
M29 mmu-miR-106a 7146 - 7153 106643029 - 106643036 targetscan
M30 mmu-miR-106b 7146 - 7153 106643029 - 106643036 pictar
M31 mmu-miR-291b-3p 7146 - 7153 106643029 - 106643036 pictar
M32 mmu-miR-106b 7146 - 7153 106643029 - 106643036 targetscan
M33 mmu-miR-291b-3p 7146 - 7152 106643030 - 106643036 pita
M34 mmu-miR-106a 7146 - 7153 106643029 - 106643036 pictar
M35 mmu-miR-291a-3p 7146 - 7153 106643029 - 106643036 pictar
M36 mmu-miR-17 7146 - 7153 106643029 - 106643036 targetscan
M37 mmu-miR-20b 7146 - 7153 106643029 - 106643036 pictar
M38 mmu-miR-20a 7146 - 7153 106643029 - 106643036 targetscan
M39 mmu-miR-93 7146 - 7153 106643029 - 106643036 pictar
M40 mmu-miR-20b 7147 - 7153 106643029 - 106643035 pita
M41 mmu-miR-17 7147 - 7153 106643029 - 106643035 pita
M42 mmu-miR-106a 7147 - 7153 106643029 - 106643035 pita
M43 mmu-miR-93 7147 - 7153 106643029 - 106643035 pita
M44 mmu-miR-106b 7147 - 7153 106643029 - 106643035 pita
M45 mmu-miR-20a 7147 - 7153 106643029 - 106643035 pita
M46 mmu-miR-539 7161 - 7181 106643001 - 106643021 miranda
M47 mmu-miR-206 7168 - 7189 106642993 - 106643014 miranda
M48 mmu-miR-1 7168 - 7189 106642993 - 106643014 miranda
M49 mmu-miR-539 7173 - 7180 106643002 - 106643009 targetscan
M50 mmu-miR-539 7174 - 7180 106643002 - 106643008 pita
M51 mmu-miR-1 7181 - 7188 106642994 - 106643001 pita
M52 mmu-miR-206 7181 - 7188 106642994 - 106643001 pita
M53 mmu-miR-1 7181 - 7188 106642994 - 106643001 targetscan
M54 mmu-miR-206 7181 - 7188 106642994 - 106643001 targetscan
M55 mmu-miR-873 7184 - 7191 106642991 - 106642998 targetscan
M56 mmu-miR-33 7221 - 7228 106642954 - 106642961 pictar
M57 mmu-miR-324-3p 7228 - 7234 106642948 - 106642954 pita
M58 mmu-miR-200a 7229 - 7236 106642946 - 106642953 pictar
M59 mmu-miR-141 7229 - 7236 106642946 - 106642953 pictar
M60 mmu-miR-101a 7230 - 7254 106642928 - 106642952 miranda
M61 mmu-miR-200a 7230 - 7236 106642946 - 106642952 pita
M62 mmu-miR-101b 7230 - 7254 106642928 - 106642952 miranda
M63 mmu-miR-141 7230 - 7236 106642946 - 106642952 pita
M64 mmu-miR-758 7237 - 7244 106642938 - 106642945 targetscan
M65 mmu-miR-429 7241 - 7263 106642919 - 106642941 miranda
M66 mmu-miR-205 7262 - 7283 106642899 - 106642920 miranda
M67 mmu-miR-205 7275 - 7282 106642900 - 106642907 targetscan
M68 mmu-miR-205 7275 - 7282 106642900 - 106642907 pita
M69 mmu-miR-33 7282 - 7289 106642893 - 106642900 targetscan
M70 mmu-miR-33 7283 - 7290 106642892 - 106642899 pictar
M71 mmu-miR-33 7283 - 7289 106642893 - 106642899 pita
Group 3
M1 mmu-miR-291b-3p 7333 - 7340 106642842 - 106642849 pictar
M2 mmu-miR-142-5p 7336 - 7343 106642839 - 106642846 pita
M3 mmu-miR-878-3p 7357 - 7363 106642819 - 106642825 pita
M4 mmu-miR-486 7554 - 7576 106642606 - 106642628 miranda
M5 mmu-miR-291b-3p 7774 - 7781 106642401 - 106642408 pictar
M6 mmu-miR-20b 7774 - 7781 106642401 - 106642408 pictar
M7 mmu-miR-20a 7774 - 7781 106642401 - 106642408 pictar
M8 mmu-miR-17-5p 7774 - 7781 106642401 - 106642408 pictar
M9 mmu-miR-106a 7774 - 7781 106642401 - 106642408 pictar
M10 mmu-miR-20a 7870 - 7877 106642305 - 106642312 pictar
M11 mmu-miR-33 7932 - 7939 106642243 - 106642250 pictar
M12 mmu-miR-218 7933 - 7940 106642242 - 106642249 pictar
M13 mmu-miR-218 7933 - 7940 106642242 - 106642249 targetscan
M14 mmu-miR-20b 7961 - 7968 106642214 - 106642221 pictar
M15 mmu-miR-138 8004 - 8026 106642156 - 106642178 miranda
M16 mmu-miR-20b 8028 - 8035 106642147 - 106642154 pictar
M17 mmu-miR-7a 8050 - 8073 106642109 - 106642132 miranda
M18 mmu-miR-7b 8050 - 8073 106642109 - 106642132 miranda
M19 mmu-miR-329 8068 - 8089 106642093 - 106642114 miranda
M20 mmu-miR-362-3p 8068 - 8089 106642093 - 106642114 miranda
M21 mmu-miR-329 8081 - 8088 106642094 - 106642101 pictar
M22 mmu-miR-499 8093 - 8113 106642069 - 106642089 miranda
M23 mmu-miR-329 8213 - 8220 106641962 - 106641969 pictar
M24 mmu-miR-294 8325 - 8332 106641850 - 106641857 pictar
M25 mmu-miR-499 8338 - 8361 106641821 - 106641844 miranda
M26 mmu-miR-20a 8444 - 8451 106641731 - 106641738 pictar
M27 mmu-miR-106b 8444 - 8451 106641731 - 106641738 pictar
M28 mmu-miR-329 8457 - 8464 106641718 - 106641725 pictar
M29 mmu-miR-23b 8482 - 8502 106641680 - 106641700 miranda
M30 mmu-miR-23a 8482 - 8502 106641680 - 106641700 miranda
M31 mmu-miR-23a 8494 - 8501 106641681 - 106641688 targetscan
M32 mmu-miR-23b 8494 - 8501 106641681 - 106641688 targetscan
M33 mmu-miR-23a 8495 - 8501 106641681 - 106641687 pita
M34 mmu-miR-23b 8495 - 8501 106641681 - 106641687 pita
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
No data
Gene Ddx5

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Extended region