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Previous gene FasterDB identifier: 2271 - KDELR3 (ENSG00000100196) KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 Next gene
Gene Close
Symbol KDELR3
Synonyms ENSG00000100196
Description KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
EnsEMBL link ENSG00000100196
Chromosome 22 - forward strand
Chromosomal location
(UCSC link)		 38864067 - 38879487 (15421bp)
Sequence sequence
Associated transcripts CR590826 CR594497 CR594712 AK292102 NM_006855 AL035082 NM_016657 AK222930 CR612711 BC001277 AK129888 AK223238 AL035081 BC096722 BC098131 BC098156 BC098336 CR600149 CR456509 CR614427
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 38864067 CR590826
CR594497
CR594712
P2 1 9 38864075 AK292102
P3 1 35 38864101 AK129888
Protein prediction Close
 Transcript name   Sequence 
CR590826 sequence
CR594497 sequence
CR594712 sequence
AK292102 sequence
NM_006855 sequence
AL035082 sequence
NM_016657 sequence
AK222930 sequence
CR612711 sequence
BC001277 sequence
AK129888 sequence
AK223238 sequence
AL035081 sequence
BC096722 sequence
BC098131 sequence
BC098156 sequence
BC098336 sequence
CR600149 sequence
CR456509 sequence
CR614427 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 4 13572 38877638 AATAAA no AL035082 Cdna
PA2 4 13572 38877638 AATAAA no NM_016657 Cdna
PA3 5 14874 38878940 ACTAAA no AK292102 Full_length
PA4 5 15421 38879487 no CR614427 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
No data
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 7.13 no AGGgtgagg
S2 5' (donor) 2 9.16 no AAGgtgagg
S3 3' (acceptor) 2 8.24 no ctgtctacccttggccacagGCA
S4 5' (donor) 3 10.28 no GAGgtaagg
S5 3' (acceptor) 3 14.44 no atgtctctctccccttttagGTG
S6 5' (donor) 4 10.29 no AAGgtaggt
S7 3' (acceptor) 4 8.23 no ttgctttctctttggctcagATC
S8 3' (acceptor) 5 8.33 no tcatctccattttcttccagTCC
Conserved exons Close
 Gene identifier mouse   Position human  Position mouse 
16644 1 1
16644 2 2
16644 3 3
16644 4 4
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 3
 Transcription termination & last exon(s) 
4 2
5 2
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR) Yes Yes
 
ESRP1/2 (ESRP) Yes
 
FUS Yes
 
HNRNPA1 Yes
 
HNRNPA2B1 Yes
 
HNRNPAB
 
HNRNPC Yes
 
HNRNPF/HNRNPH1 Yes Yes
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM Yes
 
HNRNPU Yes
 
MBNL
 
NOVA1
 
PTBP1/2 (PTB) Yes Yes
 
QKI
 
RBFOX2 (FOX2) Yes
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 (SF2ASF)
 
SRSF2 (SC35)
 
SRSF5 (SRP40)
 
TDP43
 
TIA1/TIAL1 Yes
 
TRA2A
 
TRA2B
 
YBX1 (YB1)
 
Expression Close
 Exon position   Tissues   Cell lines   Cancer cell lines 
1 Expression Expression Expression
2 Expression Expression Expression
3 Expression Expression Expression
4 Expression Expression Expression
5 Expression Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 263 38864067 - 38864329 263 sequence download
1 Intron 264 - 6461 38864330 - 38870527 6198 sequence -
2 Exon 6462 - 6562 38870528 - 38870628 101 sequence download
2 Intron 6563 - 11531 38870629 - 38875597 4969 sequence -
3 Exon 11532 - 11690 38875598 - 38875756 159 sequence download
3 Intron 11691 - 13150 38875757 - 38877216 1460 sequence -
4 Exon 13151 - 13403 38877217 - 38877469 253 sequence download
4 Intron 13404 - 14434 38877470 - 38878500 1031 sequence -
5 Exon 14435 - 15421 38878501 - 38879487 987 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 CR590826
CR594497
CR594712
NM_006855
AL035082
NM_016657
AK222930
CR612711
BC001277
AK223238
AL035081
BC096722
BC098131
BC098156
BC098336
CR600149
CR456509
CR614427
 AK292102
 AK129888
 Length  172 164 138
 Number of ATGs in frame  0 0 0
 Total number of ATGs  0 0 0
 Number of GTGs in frame  5 5 5
 Total number of GTGs  7 7 7
 Number of CTGs in frame  2 2 1
 Total number of CTGs  5 5 2
 Number of micro ORFs in frame  0 0 0
 Total number of micro ORFs  0 0 0
 GC percentage  72 72 70
 Number of pyrimidine tracks  0 0 0
Close 3' untranslated regions 
 UTR 1   UTR 2 
 Supporting GenBank
accession identifers 		 AL035082
NM_016657
BC096722
BC098131
BC098156
BC098336
 CR614427
BC001277
AK129888
NM_006855
AL035081
AK223238
CR600149
CR594497
CR594712
CR590826
CR612711
AK292102
CR456509
 Length  110 946
 Number of ATGs in frame  2 3
 Total number of ATGs  4 12
 Number of GTGs in frame  1 5
 Total number of GTGs  1 13
 Number of CTGs in frame  1 5
 Total number of CTGs  2 12
 GC percentage  35 38
 Number of pyrimidine tracks  0 7
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 hsa-miR-153 13512 - 13533 38877578 - 38877599 miranda
M2 hsa-miR-544 13514 - 13537 38877580 - 38877603 miranda
Group 2
M1 hsa-miR-181d 14512 - 14534 38878578 - 38878600 miranda
M2 hsa-miR-181a 14512 - 14534 38878578 - 38878600 miranda
M3 hsa-miR-181b 14512 - 14534 38878578 - 38878600 miranda
M4 hsa-miR-181c 14513 - 14534 38878579 - 38878600 miranda
Group 3
M1 hsa-miR-154 15100 - 15121 38879166 - 38879187 miranda
M2 hsa-miR-19a 15125 - 15150 38879191 - 38879216 miranda
M3 hsa-miR-19b 15128 - 15150 38879194 - 38879216 miranda
M4 hsa-miR-137 15152 - 15177 38879218 - 38879243 miranda
M5 hsa-miR-300 15220 - 15241 38879286 - 38879307 miranda
M6 hsa-miR-381 15220 - 15241 38879286 - 38879307 miranda
M7 hsa-miR-488 15238 - 15258 38879304 - 38879324 miranda
M8 hsa-miR-137 15343 - 15365 38879409 - 38879431 miranda
M9 hsa-miR-137 15358 - 15366 38879424 - 38879432 targetscan
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Localization EXONT:000071 Transmembrane_helix 1 179 235
Localization EXONT:000071 Transmembrane_helix 2 6476 6529
Localization EXONT:000071 Transmembrane_helix 2,3 6536 11579
Localization EXONT:000071 Transmembrane_helix 3 11616 11669
Localization EXONT:000071 Transmembrane_helix 3,4 11682 13210
Localization EXONT:000071 Transmembrane_helix 4 13238 13303
Localization EXONT:000071 Transmembrane_helix 4 13334 13399
Structure EXONT:000071 Transmembrane_helix 1 179 235
Structure EXONT:000071 Transmembrane_helix 2 6476 6529
Structure EXONT:000071 Transmembrane_helix 2,3 6536 11579
Structure EXONT:000071 Transmembrane_helix 3 11616 11669
Structure EXONT:000071 Transmembrane_helix 3,4 11682 13210
Structure EXONT:000071 Transmembrane_helix 4 13238 13303
Structure EXONT:000071 Transmembrane_helix 4 13334 13399
PTM EXONT:000161 O-phospho-L-serine 1 203 205
Gene KDELR3
Gene KDELR3 Gene KDELR3
Gene KDELR3 Gene KDELR3
Gene KDELR3 Gene KDELR3
Gene KDELR3 Gene KDELR3
Gene KDELR3 Gene KDELR3
Gene KDELR3 Gene KDELR3
Gene KDELR3 Gene KDELR3
Gene KDELR3 Gene KDELR3

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Exon 1Exon 2Exon 3Exon 4Exon 1Exon 2Exon 3Exon 4Exon 5Extended region