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Previous gene FasterDB identifier: 16644 - Kdelr3 (ENSMUSG00000010830) KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 Gene Next gene
Gene Close
Symbol Kdelr3
Synonyms ENSMUSG00000010830
Description KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 Gene
EnsEMBL link ENSMUSG00000010830
Chromosome 15 - forward strand
Chromosomal location
(UCSC link)		 79346838 - 79358169 (11332bp)
Sequence sequence
Associated transcripts NM_134090 AK136991 BC011472 BC024420 AK208352
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 79346838 NM_134090
P2 1 16 79346853 AK136991
Protein prediction Close
 Transcript name   Sequence 
NM_134090 sequence
AK136991 sequence
BC011472 sequence
BC024420 sequence
AK208352 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 5 11332 79358169 AATAAA no NM_134090 Cdna
PA2 5 11651 79358488 CATAAA no BM221662 3prime_est
PA3 5 11932 79358769 AATAAA no BP770162 3prime_est

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
No data
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 8.69 no CCGgtgagc
S2 5' (donor) 2 8.14 no AAGgtaaac
S3 3' (acceptor) 2 7.69 no cccttgttcaccctgcacagGCA
S4 5' (donor) 3 7.07 no GAGgtgggt
S5 3' (acceptor) 3 10.77 no agacgtccgtgtctccctagGTG
S6 5' (donor) 4 10.08 no AAGgtaggc
S7 3' (acceptor) 4 9.93 no ttctattgttgttctgacagGTC
S8 3' (acceptor) 5 9.41 no ttttatctttttttccttagTCC
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
2271 1 1
2271 2 2
2271 3 3
2271 4 4
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 2
 Transcription termination & last exon(s) 
5 3
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
3 Expression Expression
4 Expression Expression
5 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 233 79346838 - 79347070 233 sequence download
1 Intron 234 - 6403 79347071 - 79353240 6170 sequence -
2 Exon 6404 - 6504 79353241 - 79353341 101 sequence download
2 Intron 6505 - 8396 79353342 - 79355233 1892 sequence -
3 Exon 8397 - 8555 79355234 - 79355392 159 sequence download
3 Intron 8556 - 9259 79355393 - 79356096 704 sequence -
4 Exon 9260 - 9512 79356097 - 79356349 253 sequence download
4 Intron 9513 - 10664 79356350 - 79357501 1152 sequence -
5 Exon 10665 - 11332 79357502 - 79358169 668 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2 
 Supporting GenBank
accession identifers 		 AK136991
 NM_134090
BC011472
BC024420
 Length  126 142
 Number of ATGs in frame  0 0
 Total number of ATGs  0 0
 Number of GTGs in frame  1 1
 Total number of GTGs  3 3
 Number of CTGs in frame  1 1
 Total number of CTGs  1 1
 Number of micro ORFs in frame  0 0
 Total number of micro ORFs  0 0
 GC percentage  75 77
 Number of pyrimidine tracks  0 0
Close 3' untranslated regions 
 UTR 1 
 Supporting GenBank
accession identifers 		 NM_134090
AK136991
BC011472
BC024420
 Length  627
 Number of ATGs in frame  4
 Total number of ATGs  14
 Number of GTGs in frame  7
 Total number of GTGs  16
 Number of CTGs in frame  3
 Total number of CTGs  12
 GC percentage  47
 Number of pyrimidine tracks  2
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-22 10711 - 10732 79357548 - 79357569 miranda
M2 mmu-miR-125a-3p 11223 - 11245 79358060 - 79358082 miranda
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Binding EXONT:003138 Ankyrin repeat 2,4 2924 4135
Binding EXONT:003138 Ankyrin repeat 4 4145 4438
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 2 2708 2782
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 2 2828 2908
Structure EXONT:003138 Ankyrin repeat 2,4 2924 4135
Structure EXONT:000027 Polypeptide_repeat 2,4 2924 4135
Structure EXONT:000027 Polypeptide_repeat 4 4145 4234
Structure EXONT:003138 Ankyrin repeat 4 4145 4438
Structure EXONT:000027 Polypeptide_repeat 4 4244 4333
Structure EXONT:000027 Polypeptide_repeat 4 4343 4444
PTM EXONT:000162 O-phospho-L-threonine 4 4121 4123
PTM EXONT:000162 O-phospho-L-threonine 4 4133 4135
Unclassified EXONT:009062 Ankyrin repeat-containing domain 2,4 2921 4501
Gene Kdelr3

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Exon 1Exon 2Exon 3Exon 4Exon 1Exon 2Exon 3Exon 4Exon 5Extended region