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Previous gene FasterDB identifier: 13985 - RBM6 (3G2, DEF-3, DEF3, g16, NY-LU-12) RNA binding motif protein 6 Next gene
Gene Close
Symbol RBM6
Synonyms 3G2, DEF-3, DEF3, g16, NY-LU-12
Description RNA binding motif protein 6
EnsEMBL link ENSG00000004534
Chromosome 3 - forward strand
Chromosomal location
(UCSC link)		 49977477 - 50156390 (178914bp)
Sequence sequence
Associated transcripts NM_001167582 NM_005777 AK291719 AK298108 AF069517 AL832236 BX648535 AK308794 AK303371 AK093836 AF091264 AY216800 BC030057 EF566884 EF566885 AF042857 BC046643 EF566883 U50839 BC012112 NM_005778 AF091263 AK314032 AK302766 AK297445 AK297249 BC002957 AB208813 AF103802 AF107493 AB586690 CR618916 U23946
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 51 333 AK297445
ASS2 6 272 NM_005777
AK291719
AF069517
AK303371
AF091264
AF042857
U50839
BC012112
ASS3 29 101 AK297445
ASS4 18 96 BC030057
ASS5 14 17 NM_001167582
NM_005777
AK291719
AK298108
AF069517
AL832236
BX648535
AK308794
AK093836
AF091264
EF566885
AF042857
BC046643
EF566883
U50839
BC012112
ASS6 38 2 AB208813
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 6 -935 BC030057
ASS2 1 -772 NM_001167582
NM_005777
AK291719
AK298108
AF069517
AL832236
BX648535
AK308794
AK303371
AK093836
AF091264
BC030057
EF566884
EF566885
AF042857
ASS3 50 -83 AK297445
ASS4 28 -11 EF566884
EF566885
EF566883
NM_005778
AF091263
AK314032
AK297445
AK297249
BC002957
AB208813
AF103802
AF107493
AB586690
CR618916
U23946
ASS5 25 -1 BC012112
Intron retentions Close
 Identifier   Position   Transcript 
IR1 17 BX648535
IR2 30 AF107493
AB586690
IR3 31 AB208813
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 49977477 NM_001167582
AK291719
NM_005777
P2 1 20 49977496 AK298108
P3 1 107 49977583 AK308794
P4 1 108 49977584 AK303371
P5 1 116 49977592 AK093836
P6 26 148876 50126352 NM_005778
P7 26 148911 50126387 AK314032
AK302766
AK297445
AK297249
Protein prediction Close
 Transcript name   Sequence 
NM_001167582 sequence
NM_005777 sequence
AK291719 sequence
AK298108 sequence
AF069517 sequence
AL832236 sequence
BX648535 sequence
AK308794 sequence
AK303371 sequence
AK093836 sequence
AF091264 sequence
AY216800 sequence
BC030057 sequence
EF566884 sequence
EF566885 sequence
AF042857 sequence
BC046643 sequence
EF566883 sequence
U50839 sequence
BC012112 sequence
NM_005778 sequence
AF091263 sequence
AK314032 sequence
AK302766 sequence
AK297445 sequence
AK297249 sequence
BC002957 sequence
AB208813 sequence
AF103802 sequence
AF107493 sequence
AB586690 sequence
CR618916 sequence
U23946 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 4 2817 49980293 yes AY216800 Cdna
PA2 12 117810 50095286 no AK303371 Full_length
PA3 21 126399 50103875 AATAAA no AK308794 Full_length
PA4 25 137209 50114685 AATAAA no AF069517 Cdna
PA5 25 137209 50114685 AATAAA yes AF042857 Cdna
PA6 31 162138 50139614 yes AF107493 Cdna
PA7 31 162138 50139614 yes AB586690 Cdna
PA8 51 178413 50155889 no AK314032 Full_length
PA9 51 178564 50156040 no AK297249 Full_length
PA10 51 178753 50156229 no AK297445 Full_length
PA11 51 178914 50156390 yes NM_005778 Cdna
PA12 51 178914 50156390 yes AF091263 Cdna
PA13 51 178914 50156390 yes BC002957 Cdna
PA14 51 178914 50156390 no AB208813 Cdna
PA15 51 178914 50156390 yes AF103802 Cdna
PA16 51 178914 50156390 no AK302766 Full_length

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 2 NM_001167582
NM_005777
AK291719
AK298108
AF069517
AL832236
BX648535
AK308794
AK303371
AK093836
AF091264
BC030057
EF566884
EF566885
AF042857
ES2 3 NM_001167582
NM_005777
AK291719
AK298108
AF069517
AL832236
BX648535
AK308794
AK303371
AK093836
AF091264
BC030057
EF566884
EF566885
AF042857
ES3 4 NM_001167582
NM_005777
AK291719
AK298108
AF069517
AL832236
BX648535
AK308794
AK303371
AK093836
AF091264
BC030057
EF566884
EF566885
AF042857
ES4 6 NM_001167582
AK298108
AL832236
AK308794
AK093836
EF566884
EF566885
BC046643
EF566883
ES5 7 NM_001167582
AK298108
AL832236
BC030057
BC046643
EF566883
ES6 8 NM_001167582
AK298108
AL832236
BC030057
BC046643
EF566883
ES7 9 NM_001167582
AK298108
AL832236
AK303371
AK093836
BC030057
EF566884
EF566885
BC046643
EF566883
ES8 10 AK298108
BC030057
ES9 11 BC030057
ES10 12 BC030057
ES11 13 BC030057
ES12 14 BC030057
ES13 15 BC030057
ES14 16 BC030057
ES15 17 BC030057
ES16 20 NM_001167582
NM_005777
AK291719
AK298108
AF069517
AL832236
BX648535
AK093836
AF091264
BC030057
EF566884
EF566885
AF042857
BC046643
EF566883
U50839
BC012112
ES17 24 EF566884
EF566885
EF566883
ES18 25 EF566884
EF566885
EF566883
ES19 26 EF566884
EF566885
EF566883
ES20 29 AK302766
ES21 31 AK297249
ES22 37 NM_005778
AF091263
AK314032
AK302766
AK297445
AK297249
BC002957
AF103802
CR618916
U23946
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 -6.2 no AGAgtagcc
S2 5' (donor) 1 9.31 yes TAGgtaagg
S3 5' (donor) 2 -12.3 no AAAaaaaat
S4 3' (acceptor) 2 -1.51 no cacctgccttggcctcccaaAGT
S5 5' (donor) 3 0.88 no CGGggaggt
S6 3' (acceptor) 3 -25.72 no tcaggaggctgagatggaaaAAT
S7 5' (donor) 4 -23.39 no CTCaaaaaa
S8 3' (acceptor) 4 -25.66 no acctgggccacagaacaagaCTG
S9 5' (donor) 5 11.78 no TCGgtaagt
S10 3' (acceptor) 5 7.19 no ttgtggtttattttgtacagGTA
S11 5' (donor) 6 9.8 no CAGgtatgt
S12 3' (acceptor) 6 8.74 no gcggattttccctgttgcagGAC
S13 5' (donor) 6 -8.81 yes AAGgaccac
S14 3' (acceptor) 6 8.5 yes cactgtctttgtttctacagTGG
S15 5' (donor) 7 10.28 no GAGgtaagg
S16 3' (acceptor) 7 10.07 no tttttcattctcaatttaagGAT
S17 5' (donor) 8 10.67 no CAGgtgagt
S18 3' (acceptor) 8 7.28 no taaatgccatatttttgcagATT
S19 5' (donor) 9 -0.98 no CAGgttgct
S20 3' (acceptor) 9 7.75 no tatttaaatgctgtccccagGTT
S21 5' (donor) 10 10.15 no CGAgtaagt
S22 3' (acceptor) 10 11.65 no ttctgtctttgtctttacagGGA
S23 5' (donor) 11 10.47 no AAGgtgagt
S24 3' (acceptor) 11 9.1 no gatttccttcttccttacagTGT
S25 5' (donor) 12 9.72 no AAAgtaagt
S26 3' (acceptor) 12 7.32 no ctttgtttctgttccactagTGA
S27 5' (donor) 13 10.49 no GCGgtgagt
S28 3' (acceptor) 13 4.2 no cccatttatggttgattcagCTA
S29 5' (donor) 14 10.51 no AAGgtaagg
S30 3' (acceptor) 14 4.73 no tttctgtctctgggttcaagTGT
S31 3' (acceptor) 14 6.44 yes aagtgtgtctggttctatagGAA
S32 5' (donor) 15 9.88 no CAGgtaggc
S33 3' (acceptor) 15 10.48 no tgttgtgttatctgttgcagAAA
S34 5' (donor) 16 8.46 no AGTgtaagt
S35 3' (acceptor) 16 7.41 no aacttgcctttctgtgatagGGT
S36 5' (donor) 17 10.67 no CAGgtgagt
S37 3' (acceptor) 17 7.6 no tctgatcttgttacctttagCAT
S38 5' (donor) 18 9.21 no AGGgtaaga
S39 3' (acceptor) 18 5.64 no tgtttccaactgtatcgcagCAA
S40 3' (acceptor) 18 -17.84 yes gaaagtcaagtagcaagaagGAA
S41 5' (donor) 19 5.9 no CCAgtaaga
S42 3' (acceptor) 19 4.84 no gttacctctggtttgatcagTTT
S43 5' (donor) 20 7.88 no CAGgtatat
S44 3' (acceptor) 20 6.46 no tattggtgcccattttttagATG
S45 5' (donor) 21 7.04 no AAGgtatta
S46 3' (acceptor) 21 9.7 no ccctggccttctccttccagCCT
S47 5' (donor) 22 7.2 no GAGgtaaac
S48 3' (acceptor) 22 5.54 no agaattgcctctcttctcagCAA
S49 5' (donor) 23 9.88 no CAGgtaagc
S50 3' (acceptor) 23 9.44 no gctcttctgcttaccaacagGGA
S51 5' (donor) 24 7.3 no GAGgtaaaa
S52 3' (acceptor) 24 8.37 no ggtgtctgcttcttttgcagTGA
S53 5' (donor) 25 -32.47 no TTAtctttt
S54 3' (acceptor) 25 8.78 no agtttgtctttgttttacagGCT
S55 5' (donor) 26 9.65 no GGGgtaagt
S56 3' (acceptor) 26 -33.55 no ggaggggataagcgtgaggtACT
S57 5' (donor) 27 11 no AAGgtaagt
S58 3' (acceptor) 27 7.79 no taatctctcttgtctcctagAAA
S59 5' (donor) 28 -15.98 no CCAgcggct
S60 3' (acceptor) 28 7.36 no aaaattattttccctggcagAGT
S61 5' (donor) 28 10.03 yes GAGgtgagt
S62 5' (donor) 29 6.35 no GATgtaagg
S63 3' (acceptor) 29 4.82 no ttttgtttattgtaactcagAGA
S64 3' (acceptor) 29 -18.79 yes catgacatcagtgacgagagGGA
S65 5' (donor) 30 9.22 no CAGgtgaga
S66 3' (acceptor) 30 3.5 no taatgtaaaaccctgtgcagATT
S67 5' (donor) 31 -0.98 no CAGgttgct
S68 3' (acceptor) 31 8.35 no tatctgaatgctgtctctagGTG
S69 5' (donor) 32 10.22 no AAGgtaagc
S70 3' (acceptor) 32 9.18 no aattacttcttttcttacagAAA
S71 5' (donor) 33 8.85 no TTGgtaaga
S72 3' (acceptor) 33 7.31 no gataaaactttttttttcagTGC
S73 5' (donor) 34 8.65 no ATAgtaagt
S74 3' (acceptor) 34 8.35 no tggatcactttcccttctagACT
S75 5' (donor) 35 7.61 no ATGgtgagg
S76 3' (acceptor) 35 8.72 no tttgtctcatttacccctagCGA
S77 5' (donor) 36 8.4 no AAAgtgagt
S78 3' (acceptor) 36 11.11 no tccttcacattctccttcagGAT
S79 5' (donor) 37 4.99 no CAAgtatgg
S80 3' (acceptor) 37 8.47 no acacgtttgtcttcttttagTGA
S81 5' (donor) 38 10.77 no CAGgtaaga
S82 3' (acceptor) 38 6.44 no ttggatctttgtggtttcagAGA
S83 5' (donor) 39 10.28 no CAGgtaggt
S84 3' (acceptor) 39 6.4 no ctcattttgatgttttgtagTCT
S85 5' (donor) 40 5.89 no CAGgtagta
S86 3' (acceptor) 40 4.1 no aatggtggacttttcttcagTAT
S87 5' (donor) 41 3.57 no CCGgtaatc
S88 3' (acceptor) 41 7.83 no acacttgtgtttatcatcagGCA
S89 5' (donor) 42 9.26 no ATGgtaagc
S90 3' (acceptor) 42 5.94 no gaagctgctgttctttccagACT
S91 5' (donor) 43 4.44 no CAAgtaaat
S92 3' (acceptor) 43 5.67 no gctggattttgtttttgcagCAG
S93 5' (donor) 44 5.94 no CAGgttaga
S94 3' (acceptor) 44 9.07 no ttttgtttgttgttttctagTAC
S95 5' (donor) 45 8.49 no AAGgtaata
S96 3' (acceptor) 45 5.52 no tgtttgttgtttgacattagATT
S97 5' (donor) 46 6.6 no AAAgtaagg
S98 3' (acceptor) 46 8.55 no gcttgtcctctgtttcccagGGA
S99 5' (donor) 47 3.58 no AAGgtggcc
S100 3' (acceptor) 47 10.39 no tgtcctccttttgtctccagAGG
S101 5' (donor) 48 5.37 no GAGgtgaat
S102 3' (acceptor) 48 6.07 no ctttcaaatcttttgtgtagCAA
S103 5' (donor) 49 3.3 no TGTgtatgt
S104 3' (acceptor) 49 10.9 no gtgttttttctcccatgtagATG
S105 5' (donor) 50 9.85 no GAGgtaagc
S106 3' (acceptor) 50 7.22 no tgtgtgtttgccactggcagGAA
S107 5' (donor) 50 -4.77 yes TTGgcaaca
S108 3' (acceptor) 51 7.08 no cagtctctgtgctttcccagGCT
S109 3' (acceptor) 51 -7.74 yes ggccttccttcccgccagagGGC
Conserved exons Close
 Gene identifier mouse   Position human  Position mouse 
8206 1 1
8206 3 4
8206 3 3
8206 5 2
8206 6 3
8206 7 4
8206 8 5
8206 9 6
8206 10 7
8206 11 8
8206 12 9
8206 13 10
8206 14 11
8206 15 12
8206 16 13
8206 17 14
8206 18 15
8206 19 16
8206 21 17
8206 22 18
8206 23 19
8206 24 20
8206 25 21
8206 31 6
8206 47 17
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 5
26 2
 Transcription termination & last exon(s) 
4 1
12 1
21 1
25 2
31 2
51 9
 Exon skipping 
2 15
3 15
4 15
6 9
7 6
8 6
9 10
10 2
11 1
12 1
13 1
14 1
15 1
16 1
17 1
20 17
24 3
25 3
26 3
29 1
31 1
37 10
 Alternative 3' splice sites 
6 1
14 1
18 1
29 1
38 1
51 1
 Alternative 5' splice sites 
1 1
6 1
25 1
28 1
50 1
 Intron retentions 
17 1
30 2
31 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR) Yes Yes
 
ESRP1/2 (ESRP) Yes
 
FUS Yes
 
HNRNPA1 Yes
 
HNRNPA2B1 Yes
 
HNRNPAB
 
HNRNPC Yes
 
HNRNPF/HNRNPH1 Yes Yes
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM Yes
 
HNRNPU Yes
 
MBNL
 
NOVA1
 
PTBP1/2 (PTB) Yes Yes
 
QKI
 
RBFOX2 (FOX2) Yes
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 (SF2ASF)
 
SRSF2 (SC35)
 
SRSF5 (SRP40)
 
TDP43
 
TIA1/TIAL1 Yes
 
TRA2A
 
TRA2B
 
YBX1 (YB1)
 
Expression Close
 Exon position   Tissues   Cell lines   Cancer cell lines 
1 Expression Expression Expression
2 Expression Expression Expression
3 Expression Expression Expression
4 Expression Expression Expression
5 Expression Expression Expression
6 Expression Expression Expression
7 Expression Expression Expression
8 Expression Expression Expression
9 Expression Expression Expression
10 Expression Expression Expression
11 Expression Expression Expression
12 Expression Expression Expression
13 Expression Expression Expression
14 Expression Expression Expression
15 Expression Expression Expression
16 Expression Expression Expression
17 Expression Expression Expression
18 Expression Expression Expression
19 Expression Expression Expression
20 Expression Expression Expression
21 Expression Expression Expression
22 Expression Expression Expression
23 Expression Expression Expression
24 Expression Expression Expression
25 Expression Expression Expression
26 Expression Expression Expression
27 Expression Expression Expression
28 Expression Expression Expression
29 Expression Expression Expression
30 Expression Expression Expression
31 Expression Expression Expression
32 Expression Expression Expression
33 Expression Expression Expression
34 Expression Expression Expression
35 Expression Expression Expression
36 Expression Expression Expression
37 Expression Expression Expression
38 Expression Expression Expression
39 Expression Expression Expression
40 Expression Expression Expression
41 Expression Expression Expression
42 Expression Expression Expression
43 Expression Expression Expression
44 Expression Expression Expression
45 Expression Expression Expression
46 Expression Expression Expression
47 Expression Expression Expression
48 Expression Expression Expression
49 Expression Expression Expression
50 Expression Expression Expression
51 Expression Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 954 49977477 - 49978430 954 sequence download
1 Intron 955 - 1786 49978431 - 49979262 832 sequence -
2 Exon 1787 - 1902 49979263 - 49979378 116 sequence download
2 Intron 1903 - 1968 49979379 - 49979444 66 sequence -
3 Exon 1969 - 1983 49979445 - 49979459 15 sequence download
3 Intron 1984 - 2048 49979460 - 49979524 65 sequence -
4 Exon 2049 - 2817 49979525 - 49980293 769 sequence download
4 Intron 2818 - 22532 49980294 - 50000008 19715 sequence -
5 Exon 22533 - 22642 50000009 - 50000118 110 sequence download
5 Intron 22643 - 27154 50000119 - 50004630 4512 sequence -
6 Exon 27155 - 28705 50004631 - 50006181 1551 sequence download
6 Intron 28706 - 32015 50006182 - 50009491 3310 sequence -
7 Exon 32016 - 32105 50009492 - 50009581 90 sequence download
7 Intron 32106 - 35279 50009582 - 50012755 3174 sequence -
8 Exon 35280 - 35349 50012756 - 50012825 70 sequence download
8 Intron 35350 - 59396 50012826 - 50036872 24047 sequence -
9 Exon 59397 - 59470 50036873 - 50036946 74 sequence download
9 Intron 59471 - 108201 50036947 - 50085677 48731 sequence -
10 Exon 108202 - 108276 50085678 - 50085752 75 sequence download
10 Intron 108277 - 114291 50085753 - 50091767 6015 sequence -
11 Exon 114292 - 114352 50091768 - 50091828 61 sequence download
11 Intron 114353 - 117684 50091829 - 50095160 3332 sequence -
12 Exon 117685 - 117960 50095161 - 50095436 276 sequence download
12 Intron 117961 - 118358 50095437 - 50095834 398 sequence -
13 Exon 118359 - 118519 50095835 - 50095995 161 sequence download
13 Intron 118520 - 119588 50095996 - 50097064 1069 sequence -
14 Exon 119589 - 119703 50097065 - 50097179 115 sequence download
14 Intron 119704 - 120912 50097180 - 50098388 1209 sequence -
15 Exon 120913 - 120955 50098389 - 50098431 43 sequence download
15 Intron 120956 - 121096 50098432 - 50098572 141 sequence -
16 Exon 121097 - 121178 50098573 - 50098654 82 sequence download
16 Intron 121179 - 121418 50098655 - 50098894 240 sequence -
17 Exon 121419 - 121504 50098895 - 50098980 86 sequence download
17 Intron 121505 - 121918 50098981 - 50099394 414 sequence -
18 Exon 121919 - 122065 50099395 - 50099541 147 sequence download
18 Intron 122066 - 124987 50099542 - 50102463 2922 sequence -
19 Exon 124988 - 125083 50102464 - 50102559 96 sequence download
19 Intron 125084 - 125535 50102560 - 50103011 452 sequence -
20 Exon 125536 - 125589 50103012 - 50103065 54 sequence download
20 Intron 125590 - 126198 50103066 - 50103674 609 sequence -
21 Exon 126199 - 126459 50103675 - 50103935 261 sequence download
21 Intron 126460 - 128646 50103936 - 50106122 2187 sequence -
22 Exon 128647 - 128721 50106123 - 50106197 75 sequence download
22 Intron 128722 - 130411 50106198 - 50107887 1690 sequence -
23 Exon 130412 - 130509 50107888 - 50107985 98 sequence download
23 Intron 130510 - 135157 50107986 - 50112633 4648 sequence -
24 Exon 135158 - 135287 50112634 - 50112763 130 sequence download
24 Intron 135288 - 136964 50112764 - 50114440 1677 sequence -
25 Exon 136965 - 137209 50114441 - 50114685 245 sequence download
25 Intron 137210 - 148875 50114686 - 50126351 11666 sequence -
26 Exon 148876 - 148986 50126352 - 50126462 111 sequence download
26 Intron 148987 - 150338 50126463 - 50127814 1352 sequence -
27 Exon 150339 - 150408 50127815 - 50127884 70 sequence download
27 Intron 150409 - 151999 50127885 - 50129475 1591 sequence -
28 Exon 152000 - 152176 50129476 - 50129652 177 sequence download
28 Intron 152177 - 153676 50129653 - 50131152 1500 sequence -
29 Exon 153677 - 153832 50131153 - 50131308 156 sequence download
29 Intron 153833 - 159938 50131309 - 50137414 6106 sequence -
30 Exon 159939 - 160008 50137415 - 50137484 70 sequence download
30 Intron 160009 - 160488 50137485 - 50137964 480 sequence -
31 Exon 160489 - 160562 50137965 - 50138038 74 sequence download
31 Intron 160563 - 163039 50138039 - 50140515 2477 sequence -
32 Exon 163040 - 163123 50140516 - 50140599 84 sequence download
32 Intron 163124 - 164204 50140600 - 50141680 1081 sequence -
33 Exon 164205 - 164265 50141681 - 50141741 61 sequence download
33 Intron 164266 - 165033 50141742 - 50142509 768 sequence -
34 Exon 165034 - 165099 50142510 - 50142575 66 sequence download
34 Intron 165100 - 165505 50142576 - 50142981 406 sequence -
35 Exon 165506 - 165666 50142982 - 50143142 161 sequence download
35 Intron 165667 - 166723 50143143 - 50144199 1057 sequence -
36 Exon 166724 - 166821 50144200 - 50144297 98 sequence download
36 Intron 166822 - 166974 50144298 - 50144450 153 sequence -
37 Exon 166975 - 167048 50144451 - 50144524 74 sequence download
37 Intron 167049 - 167438 50144525 - 50144914 390 sequence -
38 Exon 167439 - 167526 50144915 - 50145002 88 sequence download
38 Intron 167527 - 168026 50145003 - 50145502 500 sequence -
39 Exon 168027 - 168104 50145503 - 50145580 78 sequence download
39 Intron 168105 - 168188 50145581 - 50145664 84 sequence -
40 Exon 168189 - 168261 50145665 - 50145737 73 sequence download
40 Intron 168262 - 169559 50145738 - 50147035 1298 sequence -
41 Exon 169560 - 169645 50147036 - 50147121 86 sequence download
41 Intron 169646 - 170335 50147122 - 50147811 690 sequence -
42 Exon 170336 - 170420 50147812 - 50147896 85 sequence download
42 Intron 170421 - 170635 50147897 - 50148111 215 sequence -
43 Exon 170636 - 170727 50148112 - 50148203 92 sequence download
43 Intron 170728 - 173339 50148204 - 50150815 2612 sequence -
44 Exon 173340 - 173501 50150816 - 50150977 162 sequence download
44 Intron 173502 - 173906 50150978 - 50151382 405 sequence -
45 Exon 173907 - 174056 50151383 - 50151532 150 sequence download
45 Intron 174057 - 174136 50151533 - 50151612 80 sequence -
46 Exon 174137 - 174208 50151613 - 50151684 72 sequence download
46 Intron 174209 - 175384 50151685 - 50152860 1176 sequence -
47 Exon 175385 - 175564 50152861 - 50153040 180 sequence download
47 Intron 175565 - 175862 50153041 - 50153338 298 sequence -
48 Exon 175863 - 175937 50153339 - 50153413 75 sequence download
48 Intron 175938 - 177030 50153414 - 50154506 1093 sequence -
49 Exon 177031 - 177128 50154507 - 50154604 98 sequence download
49 Intron 177129 - 177206 50154605 - 50154682 78 sequence -
50 Exon 177207 - 177336 50154683 - 50154812 130 sequence download
50 Intron 177337 - 178287 50154813 - 50155763 951 sequence -
51 Exon 178288 - 178914 50155764 - 50156390 627 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4   UTR 5   UTR 6   UTR 7   UTR 8   UTR 9 
 Supporting GenBank
accession identifers 		 NM_005777
AK291719
 AK303371
 BX648535
BC030057
AF091264
 AK308794
 AK093836
 NM_001167582
 AL832236
AF069517
BC046643
EF566883
 AK298108
 EF566884
EF566885
AF042857
U50839
BC012112
 Length  248 141 821 306 346 301 657 615 963
 Number of ATGs in frame  0 0 2 0 4 0 1 0 3
 Total number of ATGs  0 0 12 4 5 1 6 3 16
 Number of GTGs in frame  2 1 3 2 4 2 6 3 4
 Total number of GTGs  6 3 20 7 8 8 14 13 19
 Number of CTGs in frame  0 0 0 2 2 2 4 3 3
 Total number of CTGs  5 3 13 6 5 6 8 9 12
 Number of micro ORFs in frame  0 0 1 0 2 0 0 0 0
 Total number of micro ORFs  0 0 6 2 2 1 3 2 4
 GC percentage  62 57 48 53 50 60 53 54 48
 Number of pyrimidine tracks  1 0 7 0 0 1 2 3 2
Close 3' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4   UTR 5   UTR 6 
 Supporting GenBank
accession identifers 		 AK303371
 BC012112
 BX648535
AK308794
NM_001167582
NM_005777
AK291719
AK298108
AK093836
AF091264
BC030057
BC046643
U50839
AL832236
 AF069517
 AF042857
 EF566884
EF566885
EF566883
 Length  182 1196 1410 121 119 440
 Number of ATGs in frame  0 2 6 0 0 0
 Total number of ATGs  0 17 21 2 2 16
 Number of GTGs in frame  2 7 18 0 0 0
 Total number of GTGs  4 31 38 2 2 4
 Number of CTGs in frame  0 0 8 0 0 0
 Total number of CTGs  2 12 21 1 1 14
 GC percentage  49 47 46 32 34 50
 Number of pyrimidine tracks  1 5 7 2 2 1
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 hsa-miR-376b 27821 - 27843 50005297 - 50005319 miranda
M2 hsa-miR-339-5p 27838 - 27858 50005314 - 50005334 miranda
M3 hsa-miR-324-5p 27840 - 27862 50005316 - 50005338 miranda
M4 hsa-miR-328 27984 - 28005 50005460 - 50005481 miranda
M5 hsa-miR-339-5p 28109 - 28134 50005585 - 50005610 miranda
M6 hsa-miR-300 28194 - 28216 50005670 - 50005692 miranda
M7 hsa-miR-381 28194 - 28216 50005670 - 50005692 miranda
M8 hsa-miR-485-5p 28257 - 28279 50005733 - 50005755 miranda
M9 hsa-miR-181a 28289 - 28312 50005765 - 50005788 miranda
M10 hsa-miR-181d 28290 - 28312 50005766 - 50005788 miranda
M11 hsa-miR-181b 28290 - 28312 50005766 - 50005788 miranda
M12 hsa-miR-181c 28290 - 28312 50005766 - 50005788 miranda
M13 hsa-miR-23a 28291 - 28314 50005767 - 50005790 miranda
M14 hsa-miR-23b 28291 - 28314 50005767 - 50005790 miranda
M15 hsa-miR-422a 28449 - 28473 50005925 - 50005949 miranda
M16 hsa-miR-378 28450 - 28473 50005926 - 50005949 miranda
Group 2
M1 hsa-miR-154 117694 - 117715 50095170 - 50095191 miranda
M2 hsa-miR-485-5p 117702 - 117727 50095178 - 50095203 miranda
Group 3
M1 hsa-miR-328 117872 - 117894 50095348 - 50095370 miranda
Group 4
M1 hsa-miR-424 126372 - 126393 50103848 - 50103869 miranda
M2 hsa-miR-15b 126373 - 126393 50103849 - 50103869 miranda
M3 hsa-miR-544 126380 - 126401 50103856 - 50103877 miranda
Group 5
M1 hsa-miR-383 126409 - 126430 50103885 - 50103906 miranda
M2 hsa-miR-138 126420 - 126440 50103896 - 50103916 miranda
M3 hsa-miR-210 126435 - 126458 50103911 - 50103934 miranda
Group 6
M1 hsa-miR-185 137125 - 137146 50114601 - 50114622 miranda
M2 hsa-miR-185 137139 - 137145 50114615 - 50114621 pita
M3 hsa-miR-497 137151 - 137173 50114627 - 50114649 miranda
M4 hsa-miR-424 137152 - 137173 50114628 - 50114649 miranda
M5 hsa-miR-15a 137153 - 137173 50114629 - 50114649 miranda
M6 hsa-miR-15b 137153 - 137173 50114629 - 50114649 miranda
M7 hsa-miR-802 137153 - 137160 50114629 - 50114636 pita
M8 hsa-miR-16 137154 - 137173 50114630 - 50114649 miranda
M9 hsa-miR-195 137154 - 137173 50114630 - 50114649 miranda
M10 hsa-miR-424 137165 - 137172 50114641 - 50114648 pita
M11 hsa-miR-15b 137166 - 137174 50114642 - 50114650 targetscan
M12 hsa-miR-16 137166 - 137174 50114642 - 50114650 targetscan
M13 hsa-miR-195 137166 - 137172 50114642 - 50114648 pita
M14 hsa-miR-195 137166 - 137174 50114642 - 50114650 targetscan
M15 hsa-miR-107 137166 - 137173 50114642 - 50114649 pictar
M16 hsa-miR-15a 137166 - 137172 50114642 - 50114648 pita
M17 hsa-miR-424 137166 - 137174 50114642 - 50114650 targetscan
M18 hsa-miR-103 137166 - 137173 50114642 - 50114649 pictar
M19 hsa-miR-497 137166 - 137172 50114642 - 50114648 pita
M20 hsa-miR-15b 137166 - 137172 50114642 - 50114648 pita
M21 hsa-miR-497 137166 - 137174 50114642 - 50114650 targetscan
M22 hsa-miR-15a 137166 - 137174 50114642 - 50114650 targetscan
M23 hsa-miR-16 137166 - 137172 50114642 - 50114648 pita
M24 hsa-miR-16 137167 - 137174 50114643 - 50114650 pictar
M25 hsa-miR-15b 137167 - 137174 50114643 - 50114650 pictar
M26 hsa-miR-15a 137167 - 137174 50114643 - 50114650 pictar
M27 hsa-miR-195 137167 - 137174 50114643 - 50114650 pictar
M28 hsa-miR-23a 137187 - 137205 50114663 - 50114681 miranda
M29 hsa-miR-23b 137187 - 137205 50114663 - 50114681 miranda
M30 hsa-miR-561 137187 - 137194 50114663 - 50114670 pita
Group 7
M1 hsa-miR-125a-3p 160412 - 160433 50137888 - 50137909 miranda
M2 hsa-miR-223 160428 - 160449 50137904 - 50137925 miranda
Group 8
M1 hsa-miR-224 160643 - 160663 50138119 - 50138139 miranda
M2 hsa-miR-590-3p 160674 - 160698 50138150 - 50138174 miranda
M3 hsa-miR-494 160814 - 160835 50138290 - 50138311 miranda
M4 hsa-miR-495 160833 - 160853 50138309 - 50138329 miranda
M5 hsa-miR-410 160838 - 160857 50138314 - 50138333 miranda
M6 hsa-miR-455-5p 161261 - 161281 50138737 - 50138757 miranda
M7 hsa-miR-203 161526 - 161546 50139002 - 50139022 miranda
M8 hsa-miR-193b 161768 - 161789 50139244 - 50139265 miranda
M9 hsa-miR-193a-3p 161768 - 161789 50139244 - 50139265 miranda
M10 hsa-miR-320b 161854 - 161874 50139330 - 50139350 miranda
M11 hsa-miR-320a 161854 - 161874 50139330 - 50139350 miranda
M12 hsa-miR-320d 161856 - 161874 50139332 - 50139350 miranda
M13 hsa-miR-320c 161856 - 161874 50139332 - 50139350 miranda
Group 9
M1 hsa-miR-140-5p 178530 - 178536 50156006 - 50156012 pita
M2 hsa-miR-140 178530 - 178537 50156006 - 50156013 pictar
Group 10
M1 hsa-miR-181b 178661 - 178684 50156137 - 50156160 miranda
M2 hsa-miR-181d 178661 - 178684 50156137 - 50156160 miranda
M3 hsa-miR-221 178667 - 178687 50156143 - 50156163 miranda
M4 hsa-miR-222 178668 - 178687 50156144 - 50156163 miranda
M5 hsa-miR-323-3p 178676 - 178683 50156152 - 50156159 pita
M6 hsa-miR-221 178679 - 178686 50156155 - 50156162 pita
M7 hsa-miR-222 178680 - 178686 50156156 - 50156162 pita
M8 hsa-miR-30a 178688 - 178694 50156164 - 50156170 pita
M9 hsa-miR-30b 178688 - 178694 50156164 - 50156170 pita
M10 hsa-miR-30c 178688 - 178694 50156164 - 50156170 pita
M11 hsa-miR-30d 178688 - 178694 50156164 - 50156170 pita
M12 hsa-miR-30e 178688 - 178694 50156164 - 50156170 pita
Group 11
M1 hsa-miR-9 178769 - 178775 50156245 - 50156251 pita
M2 hsa-miR-9 178769 - 178776 50156245 - 50156252 pictar
M3 hsa-miR-140 178773 - 178780 50156249 - 50156256 pictar
M4 hsa-miR-377 178775 - 178798 50156251 - 50156274 miranda
M5 hsa-miR-499-3p 178793 - 178800 50156269 - 50156276 pita
M6 hsa-miR-641 178797 - 178803 50156273 - 50156279 pita
M7 hsa-miR-96 178857 - 178883 50156333 - 50156359 miranda
M8 hsa-miR-182 178863 - 178883 50156339 - 50156359 miranda
M9 hsa-miR-151-3p 178867 - 178874 50156343 - 50156350 pita
M10 hsa-miR-151 178870 - 178877 50156346 - 50156353 pictar
M11 hsa-miR-182 178876 - 178882 50156352 - 50156358 pita
M12 hsa-miR-28 178888 - 178895 50156364 - 50156371 pictar
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Binding EXONT:006334 Nucleotide-binding, alpha-beta plait 6,7,8,9,10 28697 108252
Binding EXONT:002265 RNA recognition motif domain 7,8,9,10 32058 108252
Binding EXONT:006334 Nucleotide-binding, alpha-beta plait 12,13,14,15 117876 120925
Binding EXONT:001885 Protein binding 22 128662 128718
Binding EXONT:002240 G-patch domain 24,25 135186 137009
Localization EXONT:000064 Nuclear_localization_signal 10,11 108271 114297
Localization EXONT:000064 Nuclear_localization_signal 12 117804 117860
Localization EXONT:000064 Nuclear_localization_signal 18 122042 122053
Localization EXONT:000064 Nuclear_localization_signal 22,23 128665 130492
Localization EXONT:000016 Peroxisome targeting signal 27 150343 150351
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 5,6 22599 27991
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 6,7 27998 32084
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 7,8 32097 35288
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 8,10 35340 108227
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 11,12,13 114349 118360
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 14,15,16,17 119693 121429
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 17,18,19,21 121493 126360
Structure EXONT:000024 Compositionally_biased_region_of_peptide 18 121955 121966
Structure EXONT:000024 Compositionally_biased_region_of_peptide 19,21 125075 126201
Structure EXONT:000024 Compositionally_biased_region_of_peptide 21 126259 126279
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 22,23,24,25 128671 137048
PTM EXONT:000161 O-phospho-L-serine 6 27512 27514
PTM EXONT:000161 O-phospho-L-serine 6 27713 27715
PTM EXONT:000161 O-phospho-L-serine 6 27983 27985
PTM EXONT:000161 O-phospho-L-serine 6 28013 28015
PTM EXONT:000161 O-phospho-L-serine 6 28145 28147
PTM EXONT:000240 Monomethylated L-arginine 6 28154 28156
PTM EXONT:000161 O-phospho-L-serine 6 28169 28171
PTM EXONT:000162 O-phospho-L-threonine 6 28412 28414
PTM EXONT:000161 O-phospho-L-serine 6 28439 28441
PTM EXONT:000161 O-phospho-L-serine 6 28460 28462
PTM EXONT:000161 O-phospho-L-serine 6 28466 28468
PTM EXONT:000161 O-phospho-L-serine 6 28490 28492
PTM EXONT:000162 O-phospho-L-threonine 7 32094 32096
PTM EXONT:000161 O-phospho-L-serine 11 114319 114324
PTM EXONT:000161 O-phospho-L-serine 11 114328 114330
PTM EXONT:000164 O4'-phospho-L-tyrosine 13 118490 118492
PTM EXONT:000161 O-phospho-L-serine 15 120920 120922
PTM EXONT:000162 O-phospho-L-threonine 18 121985 121987
PTM EXONT:000161 O-phospho-L-serine 18 121988 121990
PTM EXONT:000180 N-acetylated L-lysine 18 121997 121999
PTM EXONT:000192 N6-acetyl-L-lysine 18 121997 121999
PTM EXONT:000180 N-acetylated L-lysine 18 122009 122011
PTM EXONT:000192 N6-acetyl-L-lysine 18 122009 122011
PTM EXONT:000180 N-acetylated L-lysine 18 122024 122026
PTM EXONT:000192 N6-acetyl-L-lysine 18 122024 122026
PTM EXONT:000161 O-phospho-L-serine 19 125072 125074
PTM EXONT:000164 O4'-phospho-L-tyrosine 21 126238 126240
PTM EXONT:000161 O-phospho-L-serine 21 126250 126252
PTM EXONT:000164 O4'-phospho-L-tyrosine 21 126256 126258
PTM EXONT:000162 O-phospho-L-threonine 21 126283 126285
PTM EXONT:000180 N-acetylated L-lysine 21 126430 126432
PTM EXONT:000192 N6-acetyl-L-lysine 21 126430 126432
PTM EXONT:000161 O-phospho-L-serine 21 126445 126447
PTM EXONT:000180 N-acetylated L-lysine 21 126457 126459
PTM EXONT:000192 N6-acetyl-L-lysine 21 126457 126459
PTM EXONT:000161 O-phospho-L-serine 23 130457 130459
PTM EXONT:000161 O-phospho-L-serine 23 130466 130468
PTM EXONT:000161 O-phospho-L-serine 23,24 130508 135158
Unclassified EXONT:004878 Zinc finger, C2H2-like 21 126379 126456
Gene RBM6
Gene RBM6 Gene RBM6
Gene RBM6 Gene RBM6
Gene RBM6 Gene RBM6
Gene RBM6 Gene RBM6
Gene RBM6 Gene RBM6
Gene RBM6 Gene RBM6
Gene RBM6 Gene RBM6
Gene RBM6 Gene RBM6

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 15Exon 16Exon 17Exon 18Exon 19Exon 20Exon 21Exon 22Exon 23Exon 24Exon 25Exon 26Exon 27Exon 28Exon 29Exon 30Exon 31Exon 32Exon 33Exon 34Exon 35Exon 36Exon 37Exon 38Exon 39Exon 40Exon 41Exon 42Exon 43Exon 44Exon 45Exon 46Exon 47Exon 48Exon 49Exon 50Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 15Exon 16Exon 17Exon 18Exon 19Exon 20Exon 21Exon 22Exon 23Exon 24Exon 25Exon 26Exon 27Exon 28Exon 29Exon 30Exon 31Exon 32Exon 33Exon 34Exon 35Exon 36Exon 37Exon 38Exon 39Exon 40Exon 41Exon 42Exon 43Exon 44Exon 45Exon 46Exon 47Exon 48Exon 49Exon 50Exon 51Extended region