Download PDF   |   Home   |   Legend
Previous gene FasterDB identifier: 8206 - Rbm6 (Def-3, g16, NY-LU-12) RNA binding motif protein 6 Gene Next gene
Gene Close
Symbol Rbm6
Synonyms Def-3, g16, NY-LU-12
Description RNA binding motif protein 6 Gene
EnsEMBL link ENSMUSG00000032582
Chromosome 9 - reverse strand
Chromosomal location
(UCSC link)		 107675890 - 107775152 (99263bp)
Sequence sequence
Associated transcripts BC026129 NM_029169 NM_011251 AK164432 AK081846 AK134164 AK077899 AK030451 AK145612 BC026130 AJ006486 AK220446 X96701 AK032150 AK013915
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 3 271 BC026129
NM_011251
AK081846
AK134164
AJ006486
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 107775152 BC026129
P2 1 57 107775096 AK164432
P3 1 78 107775075 AK081846
P4 1 92 107775061 AK134164
P5 1 97 107775056 AK077899
P6 1 99 107775054 AK030451
P7 1 114 107775039 AK145612
P8 6 39343 107735810 AK032150
P9 10 81766 107693387 AK013915
Protein prediction Close
 Transcript name   Sequence 
BC026129 sequence
NM_029169 sequence
NM_011251 sequence
AK164432 sequence
AK081846 sequence
AK134164 sequence
AK077899 sequence
AK030451 sequence
AK145612 sequence
BC026130 sequence
AJ006486 sequence
AK220446 sequence
X96701 sequence
AK032150 sequence
AK013915 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 2 14570 107760583 AATAAA no AK030451 Full_length
PA2 6 41195 107733958 no AK081846 Full_length
PA3 6 41195 107733958 no AK134164 Full_length
PA4 15 85544 107689609 no AK032150 Full_length
PA5 17 90086 107685067 no AK013915 Full_length
PA6 21 99263 107675890 AATAAA no NM_029169 Cdna
PA7 21 99263 107675890 AATAAA no NM_011251 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 3 AK164432
ES2 4 AK164432
ES3 5 AK164432
ES4 6 AK164432
ES5 7 AK164432
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 8.92 no TTGgtaagg
S2 5' (donor) 2 11.78 no TCGgtaagt
S3 3' (acceptor) 2 6.7 no cccaagtttcttttatacagGTA
S4 5' (donor) 3 9.8 no CAGgtatgt
S5 3' (acceptor) 3 8.74 no gcggattttccctgttgcagGAC
S6 3' (acceptor) 3 9.46 yes ccctgtctttgtttctacagTGG
S7 5' (donor) 4 10.06 no GAGgtaaga
S8 3' (acceptor) 4 5.3 no ctttacattctgaattcaagGAT
S9 5' (donor) 5 10.67 no CAGgtgagt
S10 3' (acceptor) 5 8.17 no taaatgtcatatttttgcagATT
S11 5' (donor) 6 -0.98 no CAGgttgct
S12 3' (acceptor) 6 7.75 no tatttaaatgctgtccccagGTT
S13 5' (donor) 7 10.15 no CGAgtaagt
S14 3' (acceptor) 7 12.34 no ttttgtctttctttttacagGGA
S15 5' (donor) 8 11 no AAGgtaagt
S16 3' (acceptor) 8 12.53 no tttttcttttttccctgcagTGT
S17 5' (donor) 9 8.4 no AAAgtgagt
S18 3' (acceptor) 9 3.87 no tttaaattcccctacaacagAAG
S19 5' (donor) 10 7.39 no GCAgtgagt
S20 3' (acceptor) 10 8.02 no tctgtctgtgcttcatacagCAA
S21 5' (donor) 11 10.51 no AAGgtaagg
S22 3' (acceptor) 11 8.95 no gattgtctttggttctttagGAA
S23 5' (donor) 12 9.88 no CAGgtaggc
S24 3' (acceptor) 12 9.69 no tgtcatattttgtattgcagAAA
S25 5' (donor) 13 8.46 no AGTgtaagt
S26 3' (acceptor) 13 7.67 no agttttggtttctctaatagGGT
S27 5' (donor) 14 8.02 no CAGgttagt
S28 3' (acceptor) 14 6.48 no tctgattttattccatgtagCAT
S29 5' (donor) 15 10.51 no AAGgtaagg
S30 3' (acceptor) 15 5.83 no tctttcatactgtatcacagCAA
S31 5' (donor) 16 5.74 no CCAgtaagg
S32 3' (acceptor) 16 7.31 no ttacttttgtctttggtcagTTT
S33 5' (donor) 17 7.64 no AAGgtattt
S34 3' (acceptor) 17 5.44 no ccctagcctctttgttctagCCT
S35 5' (donor) 18 9.85 no GAGgtaagc
S36 3' (acceptor) 18 5.71 no cataaaatttcttttctcagCAA
S37 5' (donor) 19 11.08 no CAGgtaagg
S38 3' (acceptor) 19 12.95 no tcctcttctgtttcccacagGGA
S39 5' (donor) 20 10.06 no GAGgtaaga
S40 3' (acceptor) 20 9 no agtatctgtctctcttacagTGA
S41 3' (acceptor) 21 9.81 no ctcttttgattgttctgcagATT
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
13985 1 1
13985 2 5
13985 3 6
13985 3 3
13985 4 7
13985 4 3
13985 5 8
13985 6 31
13985 6 9
13985 7 10
13985 8 11
13985 9 12
13985 10 13
13985 11 14
13985 12 15
13985 13 16
13985 14 17
13985 15 18
13985 16 19
13985 17 47
13985 17 21
13985 18 22
13985 19 23
13985 20 24
13985 21 25
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 7
6 1
10 1
 Transcription termination & last exon(s) 
2 1
6 2
15 1
17 1
21 2
 Exon skipping 
3 1
4 1
5 1
6 1
7 1
 Alternative 3' splice sites 
3 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
3 Expression Expression
4 Expression Expression
5 Expression Expression
6 Expression Expression
7 Expression Expression
8 Expression Expression
9 Expression Expression
10 Expression Expression
11 Expression Expression
12 Expression Expression
13 Expression Expression
14 Expression Expression
15 Expression Expression
16 Expression Expression
17 Expression Expression
18 Expression Expression
19 Expression Expression
20 Expression Expression
21 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 173 107774980-107775152 173 sequence download
1 Intron 174 - 12362 107762791-107774979 12189 sequence -
2 Exon 12363 - 12473 107762680-107762790 111 sequence download
2 Intron 12474 - 19147 107756006-107762679 6674 sequence -
3 Exon 19148 - 20697 107754456-107756005 1550 sequence download
3 Intron 20698 - 21817 107753336-107754455 1120 sequence -
4 Exon 21818 - 21907 107753246-107753335 90 sequence download
4 Intron 21908 - 25484 107749669-107753245 3577 sequence -
5 Exon 25485 - 25554 107749599-107749668 70 sequence download
5 Intron 25555 - 39314 107735839-107749598 13760 sequence -
6 Exon 39315 - 39388 107735765-107735838 74 sequence download
6 Intron 39389 - 72048 107703105-107735764 32660 sequence -
7 Exon 72049 - 72123 107703030-107703104 75 sequence download
7 Intron 72124 - 76284 107698869-107703029 4161 sequence -
8 Exon 76285 - 76345 107698808-107698868 61 sequence download
8 Intron 76346 - 80803 107694350-107698807 4458 sequence -
9 Exon 80804 - 81070 107694083-107694349 267 sequence download
9 Intron 81071 - 81656 107693497-107694082 586 sequence -
10 Exon 81657 - 81817 107693336-107693496 161 sequence download
10 Intron 81818 - 83116 107692037-107693335 1299 sequence -
11 Exon 83117 - 83214 107691939-107692036 98 sequence download
11 Intron 83215 - 84449 107690704-107691938 1235 sequence -
12 Exon 84450 - 84492 107690661-107690703 43 sequence download
12 Intron 84493 - 84632 107690521-107690660 140 sequence -
13 Exon 84633 - 84714 107690439-107690520 82 sequence download
13 Intron 84715 - 84957 107690196-107690438 243 sequence -
14 Exon 84958 - 85043 107690110-107690195 86 sequence download
14 Intron 85044 - 85423 107689730-107690109 380 sequence -
15 Exon 85424 - 85570 107689583-107689729 147 sequence download
15 Intron 85571 - 89036 107686117-107689582 3466 sequence -
16 Exon 89037 - 89132 107686021-107686116 96 sequence download
16 Intron 89133 - 89957 107685196-107686020 825 sequence -
17 Exon 89958 - 90212 107684941-107685195 255 sequence download
17 Intron 90213 - 93173 107681980-107684940 2961 sequence -
18 Exon 93174 - 93248 107681905-107681979 75 sequence download
18 Intron 93249 - 94794 107680359-107681904 1546 sequence -
19 Exon 94795 - 94892 107680261-107680358 98 sequence download
19 Intron 94893 - 98100 107677053-107680260 3208 sequence -
20 Exon 98101 - 98230 107676923-107677052 130 sequence download
20 Intron 98231 - 99014 107676139-107676922 784 sequence -
21 Exon 99015 - 99263 107675890-107676138 249 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4   UTR 5   UTR 6 
 Supporting GenBank
accession identifers 		 NM_029169
AK220446
 AK145612
 BC026129
NM_011251
AJ006486
 AK134164
 AK077899
 AK164432
 Length  905 794 636 545 830 560
 Number of ATGs in frame  0 0 1 1 9 0
 Total number of ATGs  12 12 6 6 13 4
 Number of GTGs in frame  5 4 2 1 5 0
 Total number of GTGs  19 17 9 8 18 9
 Number of CTGs in frame  4 3 2 1 6 2
 Total number of CTGs  13 11 8 6 12 7
 Number of micro ORFs in frame  0 0 1 1 5 0
 Total number of micro ORFs  6 6 1 1 6 3
 GC percentage  50 47 54 52 48 52
 Number of pyrimidine tracks  8 7 5 4 7 3
Close 3' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 AK134164
 AK077899
BC026129
AK145612
AK220446
AK164432
 NM_029169
NM_011251
AJ006486
 Length  1733 461 125
 Number of ATGs in frame  17 2 0
 Total number of ATGs  34 5 1
 Number of GTGs in frame  14 5 0
 Total number of GTGs  40 11 2
 Number of CTGs in frame  7 0 1
 Total number of CTGs  19 5 2
 GC percentage  40 45 34
 Number of pyrimidine tracks  12 2 2
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-145 39537 - 39558 107735595 - 107735616 miranda
M2 mmu-miR-376c 39995 - 40016 107735137 - 107735158 miranda
M3 mmu-miR-495 40058 - 40079 107735074 - 107735095 miranda
M4 mmu-miR-320 40276 - 40295 107734858 - 107734877 miranda
M5 mmu-miR-495 40512 - 40533 107734620 - 107734641 miranda
M6 mmu-miR-1192 40516 - 40537 107734616 - 107734637 miranda
Group 2
M1 mmu-miR-592 99146 - 99167 107675986 - 107676007 miranda
M2 mmu-miR-539 99149 - 99174 107675979 - 107676004 miranda
M3 mmu-miR-1192 99188 - 99210 107675943 - 107675965 miranda
M4 mmu-miR-497 99202 - 99225 107675928 - 107675951 miranda
M5 mmu-miR-322 99204 - 99225 107675928 - 107675949 miranda
M6 mmu-miR-15a 99205 - 99225 107675928 - 107675948 miranda
M7 mmu-miR-15b 99205 - 99225 107675928 - 107675948 miranda
M8 mmu-miR-195 99206 - 99225 107675928 - 107675947 miranda
M9 mmu-miR-802 99206 - 99213 107675940 - 107675947 pita
M10 mmu-miR-16 99206 - 99225 107675928 - 107675947 miranda
M11 mmu-miR-424 99217 - 99224 107675929 - 107675936 pictar
M12 mmu-miR-322 99217 - 99225 107675928 - 107675936 targetscan
M13 mmu-miR-107 99217 - 99224 107675929 - 107675936 pictar
M14 mmu-miR-497 99217 - 99225 107675928 - 107675936 targetscan
M15 mmu-miR-15a 99217 - 99225 107675928 - 107675936 targetscan
M16 mmu-miR-103 99217 - 99224 107675929 - 107675936 pictar
M17 mmu-miR-15b 99217 - 99225 107675928 - 107675936 targetscan
M18 mmu-miR-16 99217 - 99225 107675928 - 107675936 targetscan
M19 mmu-miR-322 99217 - 99224 107675929 - 107675936 pita
M20 mmu-miR-195 99217 - 99225 107675928 - 107675936 targetscan
M21 mmu-miR-16 99218 - 99224 107675929 - 107675935 pita
M22 mmu-miR-503 99218 - 99225 107675928 - 107675935 pictar
M23 mmu-miR-195 99218 - 99224 107675929 - 107675935 pita
M24 mmu-miR-195 99218 - 99225 107675928 - 107675935 pictar
M25 mmu-miR-16 99218 - 99225 107675928 - 107675935 pictar
M26 mmu-miR-15a 99218 - 99224 107675929 - 107675935 pita
M27 mmu-miR-15b 99218 - 99225 107675928 - 107675935 pictar
M28 mmu-miR-15b 99218 - 99224 107675929 - 107675935 pita
M29 mmu-miR-15a 99218 - 99225 107675928 - 107675935 pictar
M30 mmu-miR-497 99218 - 99224 107675929 - 107675935 pita
M31 mmu-miR-23a 99239 - 99259 107675894 - 107675914 miranda
M32 mmu-miR-23b 99239 - 99259 107675894 - 107675914 miranda
M33 mmu-miR-23a 99251 - 99258 107675895 - 107675902 pita
M34 mmu-miR-23b 99251 - 99258 107675895 - 107675902 pita
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Binding EXONT:001885 Protein binding 6,7,8,9,10,11 19119 22950
Localization EXONT:000067 Nuclear_export_signal 5,6 12338 19103
Localization EXONT:000071 Transmembrane_helix 9 21125 21184
Localization EXONT:000067 Nuclear_export_signal 10 22072 22113
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 1,2,3,4 174 5224
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 8 20803 20907
Structure EXONT:000071 Transmembrane_helix 9 21125 21184
PTM EXONT:000161 O-phospho-L-serine 2 559 561
PTM EXONT:000161 O-phospho-L-serine 4 5243 5245
PTM EXONT:000164 O4'-phospho-L-tyrosine 4 5270 5275
Gene Rbm6

Please wait while loading ...

Loading

Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 15Exon 16Exon 17Exon 18Exon 19Exon 20Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 15Exon 16Exon 17Exon 18Exon 19Exon 20Exon 21Extended region