Gene | |||
---|---|---|---|
Symbol | MON1A | ||
Synonyms | MGC13272, SAND1 | ||
Description | MON1 homolog A (yeast) | ||
EnsEMBL link | ENSG00000164077 | ||
Chromosome | 3 - reverse strand | ||
Chromosomal location (UCSC link) |
49946303 - 49967445 (21143bp) | ||
Sequence | sequence | ||
Associated transcripts | NM_032355 NM_001142501 AK315630 BC006299 AK074404 AK092018 AK307140 CR598615 BC009459 CR626253 BC047022 |
Transcription start sites | ||||
---|---|---|---|---|
Identifier | Position | Gene coordinates | Chromosomal coordinates | Transcript |
P1 | 1 | 1 | 49967445 | NM_032355 NM_001142501 |
P2 | 1 | 147 | 49967299 | AK315630 |
P3 | 1 | 190 | 49967256 | AK074404 |
P4 | 1 | 202 | 49967244 | AK092018 AK307140 |
Protein prediction | |
---|---|
Transcript name | Sequence |
NM_032355 | sequence |
NM_001142501 | sequence |
AK315630 | sequence |
BC006299 | sequence |
AK074404 | sequence |
AK092018 | sequence |
AK307140 | sequence |
CR598615 | sequence |
BC009459 | sequence |
CR626253 | sequence |
BC047022 | sequence |
Polyadenylation | |||||||
---|---|---|---|---|---|---|---|
Identifier | Position | Gene coordinates of cleavage site | Chromosomal coordinates of cleavage site | Pattern | PolyA tail | Accession number | Type |
PA1 | 2 | 17616 | 49949830 | no | AK307140 | Full_length | |
PA2 | 6 | 20999 | 49946447 | no | AK315630 | Full_length | |
PA3 | 6 | 21143 | 49946303 | ATTAAA | yes | NM_032355 | Cdna |
PA4 | 6 | 21143 | 49946303 | ATTAAA | yes | NM_001142501 | Cdna |
PA5 | 6 | 21143 | 49946303 | ATTAAA | yes | BC009459 | Cdna |
Exon skipping | ||
---|---|---|
Identifier | Position | Transcript |
ES1 | 3 | NM_001142501 AK092018 BC047022 |
Conserved exons | ||
---|---|---|
Gene identifier mouse | Position human | Position mouse |
8325 | 1 | 1 |
8325 | 2 | 2 |
8325 | 3 | 3 |
8325 | 4 | 4 |
8325 | 5 | 5 |
8325 | 6 | 6 |
Report | |
---|---|
Exon | Number of supporting transcripts |
Transcription initiation & first exon(s) | |
1 | 4 |
Transcription termination & last exon(s) | |
2 | 1 |
6 | 4 |
Exon skipping | |
3 | 3 |
Intron retentions | |
4 | 1 |
5 | 1 |
Expression | |||
---|---|---|---|
Exon position | Tissues | Cell lines | Cancer cell lines |
1 | Expression | Expression | Expression |
2 | Expression | Expression | Expression |
3 | Expression | Expression | Expression |
4 | Expression | Expression | Expression |
5 | Expression | Expression | Expression |
6 | Expression | Expression | Expression |
Exon-Intron | ||||||
---|---|---|---|---|---|---|
Position | Type | Gene coordinates | Chromosomal coordinates | Length | Sequence | Features |
1 | Exon | 1 - 404 | 49967042-49967445 | 404 | sequence | download |
1 | Intron | 405 - 16653 | 49950793-49967041 | 16249 | sequence | - |
2 | Exon | 16654 - 16793 | 49950653-49950792 | 140 | sequence | download |
2 | Intron | 16794 - 18001 | 49949445-49950652 | 1208 | sequence | - |
3 | Exon | 18002 - 18487 | 49948959-49949444 | 486 | sequence | download |
3 | Intron | 18488 - 19128 | 49948318-49948958 | 641 | sequence | - |
4 | Exon | 19129 - 19894 | 49947552-49948317 | 766 | sequence | download |
4 | Intron | 19895 - 20612 | 49946834-49947551 | 718 | sequence | - |
5 | Exon | 20613 - 20760 | 49946686-49946833 | 148 | sequence | download |
5 | Intron | 20761 - 20858 | 49946588-49946685 | 98 | sequence | - |
6 | Exon | 20859 - 21143 | 49946303-49946587 | 285 | sequence | download |
miRNAs | ||||
---|---|---|---|---|
Identifier | Name | Gene coordinates | Chromosomal coordinates | Prediction algorithm |
Group 1 | ||||
M1 | hsa-miR-149 | 17177 - 17200 | 49950246 - 49950269 | miranda |
M2 | hsa-miR-330-5p | 17382 - 17403 | 49950043 - 49950064 | miranda |
M3 | hsa-miR-326 | 17384 - 17403 | 49950043 - 49950062 | miranda |
M4 | hsa-miR-204 | 17516 - 17537 | 49949909 - 49949930 | miranda |
M5 | hsa-miR-211 | 17516 - 17537 | 49949909 - 49949930 | miranda |
Group 2 | ||||
M1 | hsa-miR-135b | 21046 - 21053 | 49946393 - 49946400 | pictar |
M2 | hsa-miR-135a | 21046 - 21053 | 49946393 - 49946400 | pictar |
M3 | hsa-miR-155 | 21119 - 21126 | 49946320 - 49946327 | targetscan |
M4 | hsa-miR-155 | 21119 - 21126 | 49946320 - 49946327 | pictar |
M5 | hsa-miR-302b-star | 21122 - 21129 | 49946317 - 49946324 | pictar |
M6 | hsa-miR-330-3p | 21128 - 21135 | 49946311 - 49946318 | pita |
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