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Previous gene FasterDB identifier: 13799 - MON1A (MGC13272, SAND1) MON1 homolog A (yeast) Next gene
Gene Close
Symbol MON1A
Synonyms MGC13272, SAND1
Description MON1 homolog A (yeast)
EnsEMBL link ENSG00000164077
Chromosome 3 - reverse strand
Chromosomal location
(UCSC link)
49946303 - 49967445 (21143bp)
Sequence sequence
Associated transcripts NM_032355 NM_001142501 AK315630 BC006299 AK074404 AK092018 AK307140 CR598615 BC009459 CR626253 BC047022
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
IR1 4 AK092018
IR2 5 AK092018
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 49967445 NM_032355
NM_001142501
P2 1 147 49967299 AK315630
P3 1 190 49967256 AK074404
P4 1 202 49967244 AK092018
AK307140
Protein prediction Close
 Transcript name   Sequence 
NM_032355 sequence
NM_001142501 sequence
AK315630 sequence
BC006299 sequence
AK074404 sequence
AK092018 sequence
AK307140 sequence
CR598615 sequence
BC009459 sequence
CR626253 sequence
BC047022 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 2 17616 49949830 no AK307140 Full_length
PA2 6 20999 49946447 no AK315630 Full_length
PA3 6 21143 49946303 ATTAAA yes NM_032355 Cdna
PA4 6 21143 49946303 ATTAAA yes NM_001142501 Cdna
PA5 6 21143 49946303 ATTAAA yes BC009459 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 3 NM_001142501
AK092018
BC047022
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 10.67 no CAGgtgagt
S2 5' (donor) 2 9.99 no CAGgtatgg
S3 3' (acceptor) 2 9.45 no tgcatttgtttgccccacagGAG
S4 5' (donor) 3 9.6 no CAGgtgagc
S5 3' (acceptor) 3 8.72 no ccagtgcttttggcctgcagGTG
S6 5' (donor) 4 10.07 no CAGgtgagg
S7 3' (acceptor) 4 11.51 no ctttcctgtcccgctctcagATG
S8 5' (donor) 5 9.08 no TGGgtaagg
S9 3' (acceptor) 5 9.25 no tccctccaccctgtctgcagCCC
S10 3' (acceptor) 6 10.7 no accctttgccccttctccagGTG
Conserved exons Close
 Gene identifier mouse   Position human  Position mouse 
8325 1 1
8325 2 2
8325 3 3
8325 4 4
8325 5 5
8325 6 6
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 4
 Transcription termination & last exon(s) 
2 1
6 4
 Exon skipping 
3 3
 Intron retentions 
4 1
5 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR) Yes Yes
 
ESRP1/2 (ESRP) Yes
 
FUS Yes
 
HNRNPA1 Yes
 
HNRNPA2B1 Yes
 
HNRNPAB
 
HNRNPC Yes
 
HNRNPF/HNRNPH1 Yes Yes
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM Yes
 
HNRNPU Yes
 
MBNL
 
NOVA1
 
PTBP1/2 (PTB) Yes Yes
 
QKI
 
RBFOX2 (FOX2) Yes
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 (SF2ASF)
 
SRSF2 (SC35)
 
SRSF5 (SRP40)
 
TDP43
 
TIA1/TIAL1 Yes
 
TRA2A
 
TRA2B
 
YBX1 (YB1)
 
Expression Close
 Exon position   Tissues   Cell lines   Cancer cell lines 
1 Expression Expression Expression
2 Expression Expression Expression
3 Expression Expression Expression
4 Expression Expression Expression
5 Expression Expression Expression
6 Expression Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 404 49967042-49967445 404 sequence download
1 Intron 405 - 16653 49950793-49967041 16249 sequence -
2 Exon 16654 - 16793 49950653-49950792 140 sequence download
2 Intron 16794 - 18001 49949445-49950652 1208 sequence -
3 Exon 18002 - 18487 49948959-49949444 486 sequence download
3 Intron 18488 - 19128 49948318-49948958 641 sequence -
4 Exon 19129 - 19894 49947552-49948317 766 sequence download
4 Intron 19895 - 20612 49946834-49947551 718 sequence -
5 Exon 20613 - 20760 49946686-49946833 148 sequence download
5 Intron 20761 - 20858 49946588-49946685 98 sequence -
6 Exon 20859 - 21143 49946303-49946587 285 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 
NM_032355
NM_001142501
AK074404
AK092018
 Length  126 227 216
 Number of ATGs in frame  0 0 0
 Total number of ATGs  1 2 2
 Number of GTGs in frame  3 3 3
 Total number of GTGs  3 9 8
 Number of CTGs in frame  0 2 2
 Total number of CTGs  0 8 8
 Number of micro ORFs in frame  0 0 0
 Total number of micro ORFs  1 1 1
 GC percentage  67 69 70
 Number of pyrimidine tracks  0 1 0
Close 3' untranslated regions 
 UTR 1   UTR 2 
 Supporting GenBank
accession identifers 
AK092018
BC006299
AK074404
CR626253
BC047022
CR598615
NM_032355
NM_001142501
BC009459
 Length  1240 144
 Number of ATGs in frame  6 0
 Total number of ATGs  20 3
 Number of GTGs in frame  16 1
 Total number of GTGs  38 3
 Number of CTGs in frame  6 2
 Total number of CTGs  17 5
 GC percentage  57 60
 Number of pyrimidine tracks  11 1
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 hsa-miR-149 17177 - 17200 49950246 - 49950269 miranda
M2 hsa-miR-330-5p 17382 - 17403 49950043 - 49950064 miranda
M3 hsa-miR-326 17384 - 17403 49950043 - 49950062 miranda
M4 hsa-miR-204 17516 - 17537 49949909 - 49949930 miranda
M5 hsa-miR-211 17516 - 17537 49949909 - 49949930 miranda
Group 2
M1 hsa-miR-135b 21046 - 21053 49946393 - 49946400 pictar
M2 hsa-miR-135a 21046 - 21053 49946393 - 49946400 pictar
M3 hsa-miR-155 21119 - 21126 49946320 - 49946327 targetscan
M4 hsa-miR-155 21119 - 21126 49946320 - 49946327 pictar
M5 hsa-miR-302b-star 21122 - 21129 49946317 - 49946324 pictar
M6 hsa-miR-330-3p 21128 - 21135 49946311 - 49946318 pita
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Localization EXONT:000064 Nuclear_localization_signal 1,2 403 16699
Localization EXONT:000064 Nuclear_localization_signal 4 19794 19817
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 1 127 177
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 1 280 345
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 1,2,3 403 18327
PTM EXONT:000161 O-phospho-L-serine 2 16757 16759
PTM EXONT:000161 O-phospho-L-serine 3 18040 18042
PTM EXONT:000161 O-phospho-L-serine 3 18145 18147
Gene MON1A
Gene MON1A Gene MON1A
Gene MON1A Gene MON1A
Gene MON1A Gene MON1A
Gene MON1A Gene MON1A
Gene MON1A Gene MON1A
Gene MON1A Gene MON1A
Gene MON1A Gene MON1A
Gene MON1A Gene MON1A

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Extended region