Gene | |||
---|---|---|---|
Symbol | CSNK1E | ||
Synonyms | HCKIE | ||
Description | casein kinase 1, epsilon | ||
EnsEMBL link | ENSG00000213923 | ||
Chromosome | 22 - reverse strand | ||
Chromosomal location (UCSC link) |
38686711 - 38794878 (108168bp) | ||
Sequence | sequence | ||
Associated transcripts | AK310303 AK307225 AK092269 AK124064 CR594270 AB024597 NM_001894 CR619665 CR592492 CR599035 CR618521 CR622296 CR617099 NM_152221 CR614988 CR601968 CR618321 AK223498 CR601194 CR591261 CR596620 AB091043 BC006490 CR456429 L37043 BT019831 CR609912 CR625738 CR622448 CR590991 |
Alternative 3' splice site (acceptor) | ||||
---|---|---|---|---|
Identifier | Position | Distance (bp) | Transcript | |
ASS1 | 25 | 605 | AK092269 AB024597 NM_001894 NM_152221 CR601968 AK223498 CR591261 AB091043 BC006490 CR456429 L37043 CR609912 CR625738 CR622448 |
|
ASS2 | 21 | 469 | CR617099 |
Transcription start sites | ||||
---|---|---|---|---|
Identifier | Position | Gene coordinates | Chromosomal coordinates | Transcript |
P1 | 1 | 1 | 38794878 | AK310303 AK307225 |
P2 | 2 | 352 | 38794527 | AK092269 |
P3 | 3 | 1429 | 38793450 | AK124064 |
P4 | 13 | 80790 | 38714089 | AB024597 NM_001894 |
P5 | 14 | 81402 | 38713477 | CR619665 |
Protein prediction | |
---|---|
Transcript name | Sequence |
AK310303 | sequence |
AK307225 | sequence |
AK092269 | sequence |
AK124064 | sequence |
CR594270 | sequence |
AB024597 | sequence |
NM_001894 | sequence |
CR619665 | sequence |
CR592492 | sequence |
CR599035 | sequence |
CR618521 | sequence |
CR622296 | sequence |
CR617099 | sequence |
NM_152221 | sequence |
CR614988 | sequence |
CR601968 | sequence |
CR618321 | sequence |
AK223498 | sequence |
CR601194 | sequence |
CR591261 | sequence |
CR596620 | sequence |
AB091043 | sequence |
BC006490 | sequence |
CR456429 | sequence |
L37043 | sequence |
BT019831 | sequence |
CR609912 | sequence |
CR625738 | sequence |
CR622448 | sequence |
CR590991 | sequence |
Polyadenylation | |||||||
---|---|---|---|---|---|---|---|
Identifier | Position | Gene coordinates of cleavage site | Chromosomal coordinates of cleavage site | Pattern | PolyA tail | Accession number | Type |
PA1 | 8 | 39455 | 38755424 | AATAAA | no | AK124064 | Full_length |
PA2 | 9 | 51939 | 38742940 | no | AK307225 | Full_length | |
PA3 | 17 | 95956 | 38698923 | no | AK310303 | Full_length | |
PA4 | 21 | 102668 | 38692211 | AATAAA | no | CR617099 | Cdna |
PA5 | 25 | 106955 | 38687924 | no | AK092269 | Full_length | |
PA6 | 26 | 108034 | 38686845 | ATTAAA | no | CR591261 | Cdna |
PA7 | 26 | 108168 | 38686711 | yes | NM_001894 | Cdna | |
PA8 | 26 | 108168 | 38686711 | yes | NM_152221 | Cdna |
Exon skipping | ||
---|---|---|
Identifier | Position | Transcript |
ES1 | 2 | AK310303 AK307225 |
ES2 | 3 | AK310303 AK307225 AK092269 |
ES3 | 6 | AK310303 AK092269 |
ES4 | 8 | AK310303 AK307225 AK092269 |
ES5 | 9 | AK310303 AK092269 |
ES6 | 11 | AK092269 |
ES7 | 12 | AK092269 CR594270 |
ES8 | 13 | AK310303 AK092269 CR594270 |
ES9 | 14 | AK310303 AK092269 CR594270 AB024597 NM_001894 |
ES10 | 21 | AK092269 CR594270 AB024597 NM_001894 CR619665 CR592492 CR599035 CR622296 NM_152221 CR614988 CR601968 CR618321 AK223498 CR601194 CR591261 CR596620 AB091043 BC006490 CR456429 L37043 BT019831 CR609912 CR625738 CR622448 |
Conserved exons | ||
---|---|---|
Gene identifier mouse | Position human | Position mouse |
16420 | 15 | 3 |
16420 | 16 | 4 |
16420 | 17 | 5 |
16420 | 18 | 6 |
16420 | 19 | 7 |
16420 | 20 | 8 |
16420 | 22 | 11 |
16420 | 23 | 12 |
16420 | 24 | 13 |
Report | |
---|---|
Exon | Number of supporting transcripts |
Transcription initiation & first exon(s) | |
1 | 1 |
2 | 1 |
3 | 1 |
13 | 1 |
14 | 1 |
Transcription termination & last exon(s) | |
8 | 1 |
9 | 1 |
17 | 1 |
21 | 1 |
25 | 1 |
26 | 3 |
Exon skipping | |
2 | 2 |
3 | 3 |
6 | 2 |
8 | 3 |
9 | 2 |
11 | 1 |
12 | 2 |
13 | 3 |
14 | 5 |
21 | 24 |
Alternative 3' splice sites | |
21 | 1 |
25 | 1 |
Intron retentions | |
25 | 2 |
Expression | |||
---|---|---|---|
Exon position | Tissues | Cell lines | Cancer cell lines |
1 | Expression | Expression | Expression |
2 | Expression | Expression | Expression |
3 | Expression | Expression | Expression |
4 | Expression | Expression | Expression |
5 | Expression | Expression | Expression |
6 | Expression | Expression | Expression |
7 | Expression | Expression | Expression |
8 | Expression | Expression | Expression |
9 | Expression | Expression | Expression |
10 | Expression | Expression | Expression |
11 | Expression | Expression | Expression |
12 | Expression | Expression | Expression |
13 | Expression | Expression | Expression |
14 | Expression | Expression | Expression |
15 | Expression | Expression | Expression |
16 | Expression | Expression | Expression |
17 | Expression | Expression | Expression |
18 | Expression | Expression | Expression |
19 | Expression | Expression | Expression |
20 | Expression | Expression | Expression |
21 | Expression | Expression | Expression |
22 | Expression | Expression | Expression |
23 | Expression | Expression | Expression |
24 | Expression | Expression | Expression |
25 | Expression | Expression | Expression |
26 | Expression | Expression | Expression |
Exon-Intron | ||||||
---|---|---|---|---|---|---|
Position | Type | Gene coordinates | Chromosomal coordinates | Length | Sequence | Features |
1 | Exon | 1 - 94 | 38794785-38794878 | 94 | sequence | download |
1 | Intron | 95 - 351 | 38794528-38794784 | 257 | sequence | - |
2 | Exon | 352 - 436 | 38794443-38794527 | 85 | sequence | download |
2 | Intron | 437 - 1428 | 38793451-38794442 | 992 | sequence | - |
3 | Exon | 1429 - 1566 | 38793313-38793450 | 138 | sequence | download |
3 | Intron | 1567 - 17883 | 38776996-38793312 | 16317 | sequence | - |
4 | Exon | 17884 - 17937 | 38776942-38776995 | 54 | sequence | download |
4 | Intron | 17938 - 18450 | 38776429-38776941 | 513 | sequence | - |
5 | Exon | 18451 - 18504 | 38776375-38776428 | 54 | sequence | download |
5 | Intron | 18505 - 28828 | 38766051-38776374 | 10324 | sequence | - |
6 | Exon | 28829 - 28888 | 38765991-38766050 | 60 | sequence | download |
6 | Intron | 28889 - 37313 | 38757566-38765990 | 8425 | sequence | - |
7 | Exon | 37314 - 37475 | 38757404-38757565 | 162 | sequence | download |
7 | Intron | 37476 - 38005 | 38756874-38757403 | 530 | sequence | - |
8 | Exon | 38006 - 39455 | 38755424-38756873 | 1450 | sequence | download |
8 | Intron | 39456 - 51288 | 38743591-38755423 | 11833 | sequence | - |
9 | Exon | 51289 - 51939 | 38742940-38743590 | 651 | sequence | download |
9 | Intron | 51940 - 62167 | 38732712-38742939 | 10228 | sequence | - |
10 | Exon | 62168 - 62266 | 38732613-38732711 | 99 | sequence | download |
10 | Intron | 62267 - 62700 | 38732179-38732612 | 434 | sequence | - |
11 | Exon | 62701 - 62749 | 38732130-38732178 | 49 | sequence | download |
11 | Intron | 62750 - 63064 | 38731815-38732129 | 315 | sequence | - |
12 | Exon | 63065 - 63170 | 38731709-38731814 | 106 | sequence | download |
12 | Intron | 63171 - 80789 | 38714090-38731708 | 17619 | sequence | - |
13 | Exon | 80790 - 80888 | 38713991-38714089 | 99 | sequence | download |
13 | Intron | 80889 - 81401 | 38713478-38713990 | 513 | sequence | - |
14 | Exon | 81402 - 81714 | 38713165-38713477 | 313 | sequence | download |
14 | Intron | 81715 - 84704 | 38710175-38713164 | 2990 | sequence | - |
15 | Exon | 84705 - 84792 | 38710087-38710174 | 88 | sequence | download |
15 | Intron | 84793 - 95625 | 38699254-38710086 | 10833 | sequence | - |
16 | Exon | 95626 - 95736 | 38699143-38699253 | 111 | sequence | download |
16 | Intron | 95737 - 95864 | 38699015-38699142 | 128 | sequence | - |
17 | Exon | 95865 - 96013 | 38698866-38699014 | 149 | sequence | download |
17 | Intron | 96014 - 97921 | 38696958-38698865 | 1908 | sequence | - |
18 | Exon | 97922 - 98150 | 38696729-38696957 | 229 | sequence | download |
18 | Intron | 98151 - 98808 | 38696071-38696728 | 658 | sequence | - |
19 | Exon | 98809 - 98979 | 38695900-38696070 | 171 | sequence | download |
19 | Intron | 98980 - 99939 | 38694940-38695899 | 960 | sequence | - |
20 | Exon | 99940 - 100088 | 38694791-38694939 | 149 | sequence | download |
20 | Intron | 100089 - 101717 | 38693162-38694790 | 1629 | sequence | - |
21 | Exon | 101718 - 102668 | 38692211-38693161 | 951 | sequence | download |
21 | Intron | 102669 - 104338 | 38690541-38692210 | 1670 | sequence | - |
22 | Exon | 104339 - 104531 | 38690348-38690540 | 193 | sequence | download |
22 | Intron | 104532 - 104624 | 38690255-38690347 | 93 | sequence | - |
23 | Exon | 104625 - 104764 | 38690115-38690254 | 140 | sequence | download |
23 | Intron | 104765 - 105553 | 38689326-38690114 | 789 | sequence | - |
24 | Exon | 105554 - 105618 | 38689261-38689325 | 65 | sequence | download |
24 | Intron | 105619 - 106329 | 38688550-38689260 | 711 | sequence | - |
25 | Exon | 106330 - 107432 | 38687447-38688549 | 1103 | sequence | download |
25 | Intron | 107433 - 107860 | 38687019-38687446 | 428 | sequence | - |
26 | Exon | 107861 - 108034 | 38686845-38687018 | 174 | sequence | download |
miRNAs | ||||
---|---|---|---|---|
Identifier | Name | Gene coordinates | Chromosomal coordinates | Prediction algorithm |
Group 1 | ||||
M1 | hsa-miR-590-3p | 101769 - 101781 | 38693098 - 38693110 | miranda |
Group 2 | ||||
M1 | hsa-miR-141 | 105605 - 105611 | 38689268 - 38689274 | pita |
M2 | hsa-miR-200a | 105605 - 105611 | 38689268 - 38689274 | pita |
Group 3 | ||||
M1 | hsa-miR-129-5p | 106967 - 106987 | 38687892 - 38687912 | miranda |
M2 | hsa-miR-140-5p | 106975 - 106996 | 38687883 - 38687904 | miranda |
M3 | hsa-miR-495 | 107038 - 107044 | 38687835 - 38687841 | pita |
M4 | hsa-miR-182 | 107056 - 107063 | 38687816 - 38687823 | pictar |
M5 | hsa-miR-182 | 107057 - 107063 | 38687816 - 38687822 | pita |
Group 4 | ||||
M1 | hsa-let-7d | 107459 - 107466 | 38687413 - 38687420 | pictar |
Group 5 | ||||
M1 | hsa-miR-495 | 107931 - 107952 | 38686927 - 38686948 | miranda |
M2 | hsa-miR-495 | 107944 - 107951 | 38686928 - 38686935 | targetscan |
M3 | hsa-miR-495 | 107944 - 107951 | 38686928 - 38686935 | pita |
M4 | hsa-miR-570 | 107965 - 107971 | 38686908 - 38686914 | pita |
M5 | hsa-let-7d | 107981 - 107988 | 38686891 - 38686898 | pictar |
Group 6 | ||||
M1 | hsa-miR-548d-5p | 108036 - 108043 | 38686836 - 38686843 | pita |
M2 | hsa-miR-548h | 108036 - 108043 | 38686836 - 38686843 | pita |
M3 | hsa-miR-548i | 108036 - 108043 | 38686836 - 38686843 | pita |
M4 | hsa-miR-548a-5p | 108036 - 108043 | 38686836 - 38686843 | pita |
M5 | hsa-miR-548j | 108036 - 108043 | 38686836 - 38686843 | pita |
M6 | hsa-miR-548b-5p | 108036 - 108043 | 38686836 - 38686843 | pita |
M7 | hsa-miR-548c-5p | 108036 - 108043 | 38686836 - 38686843 | pita |
M8 | hsa-miR-559 | 108037 - 108043 | 38686836 - 38686842 | pita |
M9 | hsa-miR-520d-5p | 108040 - 108046 | 38686833 - 38686839 | pita |
M10 | hsa-miR-524-5p | 108040 - 108046 | 38686833 - 38686839 | pita |
M11 | hsa-miR-223 | 108040 - 108062 | 38686817 - 38686839 | miranda |
M12 | hsa-miR-30e-3p | 108055 - 108062 | 38686817 - 38686824 | pictar |
M13 | hsa-miR-30a-3p | 108055 - 108062 | 38686817 - 38686824 | pictar |
M14 | hsa-miR-30a-3p | 108070 - 108077 | 38686802 - 38686809 | pictar |
M15 | hsa-miR-548k | 108096 - 108102 | 38686777 - 38686783 | pita |
M16 | hsa-miR-548n | 108097 - 108103 | 38686776 - 38686782 | pita |
M17 | hsa-miR-320c | 108130 - 108137 | 38686742 - 38686749 | targetscan |
M18 | hsa-miR-320d | 108130 - 108137 | 38686742 - 38686749 | targetscan |
M19 | hsa-miR-320a | 108130 - 108137 | 38686742 - 38686749 | targetscan |
M20 | hsa-miR-9-star | 108130 - 108137 | 38686742 - 38686749 | pictar |
M21 | hsa-miR-320b | 108130 - 108137 | 38686742 - 38686749 | targetscan |
M22 | hsa-miR-607 | 108150 - 108156 | 38686723 - 38686729 | pita |
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