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Previous gene FasterDB identifier: 2305 - RP1-199H16.5 (ENSG00000184949) Putative uncharacterized protein LOC388900 Next gene
Gene Close
Symbol RP1-199H16.5
Synonyms ENSG00000184949
Description Putative uncharacterized protein LOC388900
EnsEMBL link ENSG00000184949
Chromosome 22 - reverse strand
Chromosomal location
(UCSC link)		 38974125 - 39052634 (78510bp)
Sequence sequence
Associated transcripts NM_001013647 AK301819
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 4 -40 NM_001013647
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 39052634 NM_001013647
P2 1 327 39052308 AK301819
Protein prediction Close
 Transcript name   Sequence 
NM_001013647 sequence
AK301819 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 17 70635 38982000 no AK301819 Full_length
PA2 17 72411 38980224 AATACA no AW517945 3prime_est
PA3 17 74201 38978434 GATAAA yes AI184827 3prime_est
PA4 17 74461 38978174 AATAAA no AI381778 3prime_est
PA5 17 78145 38974490 AATAAA yes BM675699 3prime_est
PA6 17 78145 38974490 AATAAA yes BM677847 3prime_est
PA7 17 78145 38974490 AATAAA yes BU743180 3prime_est
PA8 17 78145 38974490 AATAAA yes CK299295 3prime_est
PA9 17 78510 38974125 AATAAA no NM_001013647 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
No data
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 10.77 no CAGgtaaga
S2 5' (donor) 2 -3.5 no CCTgtatcc
S3 3' (acceptor) 2 6.58 no atgctgtttatgatttccagGAG
S4 5' (donor) 3 10.1 no CTGgtgagt
S5 3' (acceptor) 3 -1.23 no ttagcagactaacctcccagCAT
S6 5' (donor) 4 1.06 no GGGgtttgt
S7 3' (acceptor) 4 7.34 no ctttttcttggtttttgaagGCA
S8 5' (donor) 4 0.62 yes AAGgcaaaa
S9 5' (donor) 5 9.16 no AGGgtaagg
S10 3' (acceptor) 5 8.91 no ctttctccatttttctgcagTCA
S11 5' (donor) 6 9.16 no AAGgtgagg
S12 3' (acceptor) 6 9.12 no attctgctcttttgcttcagAAA
S13 5' (donor) 7 8.76 no CAGgtaaat
S14 3' (acceptor) 7 3.94 no tgtgaatttttttttccaagCAT
S15 5' (donor) 8 5.89 no AAAgtgagc
S16 3' (acceptor) 8 7.14 no ttcatttctattcctggcagCCA
S17 5' (donor) 9 9.22 no CAGgtgaga
S18 3' (acceptor) 9 6.71 no gagctcggcttgctccgcagAGG
S19 5' (donor) 10 9.21 no AGGgtaaga
S20 3' (acceptor) 10 7.59 no actcttgactcctcccttagGCA
S21 5' (donor) 11 10.86 no CAGgtaagt
S22 3' (acceptor) 11 8.23 no cagcttttccccttctatagGGA
S23 5' (donor) 12 7.84 no AAGgtatat
S24 3' (acceptor) 12 6.49 no ctctctcttgtctcctgaagTCT
S25 5' (donor) 13 9.6 no AAGgtgagc
S26 3' (acceptor) 13 4.29 no tgctaatgtcacattgacagAGC
S27 5' (donor) 14 -33.78 no GCAccccat
S28 3' (acceptor) 14 9.24 no cctttttctttcatccttagTCG
S29 5' (donor) 15 9.99 no CAGgtatgg
S30 3' (acceptor) 15 -10.19 no gatttccttgacagcggaagCCA
S31 5' (donor) 16 -14.23 no GAAgtctcc
S32 3' (acceptor) 16 11.42 no tctctgtgttttcctcccagGGA
S33 3' (acceptor) 17 -12.7 no gtttgtttcccccacaggagGGG
Conserved exons Close
 Gene identifier mouse   Position human  Position mouse 
16913 2 2
16913 4 4
16913 6 6
16913 7 7
16913 8 8
16913 9 9
16913 10 10
16913 13 14
16913 14 15
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 2
 Transcription termination & last exon(s) 
17 9
 Alternative 5' splice sites 
4 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR) Yes Yes
 
ESRP1/2 (ESRP) Yes
 
FUS Yes
 
HNRNPA1 Yes
 
HNRNPA2B1 Yes
 
HNRNPAB
 
HNRNPC Yes
 
HNRNPF/HNRNPH1 Yes Yes
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM Yes
 
HNRNPU Yes
 
MBNL
 
NOVA1
 
PTBP1/2 (PTB) Yes Yes
 
QKI
 
RBFOX2 (FOX2) Yes
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 (SF2ASF)
 
SRSF2 (SC35)
 
SRSF5 (SRP40)
 
TDP43
 
TIA1/TIAL1 Yes
 
TRA2A
 
TRA2B
 
YBX1 (YB1)
 
Expression Close
 Exon position   Tissues   Cell lines   Cancer cell lines 
1 Expression Expression Expression
2 Expression Expression Expression
3 Expression Expression Expression
4 Expression Expression Expression
5 Expression Expression Expression
6 Expression Expression Expression
7 Expression Expression Expression
8 Expression Expression Expression
9 Expression Expression Expression
10 Expression Expression Expression
11 Expression Expression Expression
12 Expression Expression Expression
13 Expression Expression Expression
14 Expression Expression Expression
15 Expression Expression Expression
16 Expression Expression Expression
17 Expression Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 510 39052125-39052634 510 sequence download
1 Intron 511 - 6367 39046268-39052124 5857 sequence -
2 Exon 6368 - 6603 39046032-39046267 236 sequence download
2 Intron 6604 - 10984 39041651-39046031 4381 sequence -
3 Exon 10985 - 11067 39041568-39041650 83 sequence download
3 Intron 11068 - 16905 39035730-39041567 5838 sequence -
4 Exon 16906 - 17015 39035620-39035729 110 sequence download
4 Intron 17016 - 17807 39034828-39035619 792 sequence -
5 Exon 17808 - 17884 39034751-39034827 77 sequence download
5 Intron 17885 - 20032 39032603-39034750 2148 sequence -
6 Exon 20033 - 20179 39032456-39032602 147 sequence download
6 Intron 20180 - 27694 39024941-39032455 7515 sequence -
7 Exon 27695 - 27796 39024839-39024940 102 sequence download
7 Intron 27797 - 28287 39024348-39024838 491 sequence -
8 Exon 28288 - 28392 39024243-39024347 105 sequence download
8 Intron 28393 - 30326 39022309-39024242 1934 sequence -
9 Exon 30327 - 30450 39022185-39022308 124 sequence download
9 Intron 30451 - 33350 39019285-39022184 2900 sequence -
10 Exon 33351 - 33458 39019177-39019284 108 sequence download
10 Intron 33459 - 36338 39016297-39019176 2880 sequence -
11 Exon 36339 - 36418 39016217-39016296 80 sequence download
11 Intron 36419 - 49153 39003482-39016216 12735 sequence -
12 Exon 49154 - 49241 39003394-39003481 88 sequence download
12 Intron 49242 - 51281 39001354-39003393 2040 sequence -
13 Exon 51282 - 51376 39001259-39001353 95 sequence download
13 Intron 51377 - 56708 38995927-39001258 5332 sequence -
14 Exon 56709 - 56862 38995773-38995926 154 sequence download
14 Intron 56863 - 59269 38993366-38995772 2407 sequence -
15 Exon 59270 - 59426 38993209-38993365 157 sequence download
15 Intron 59427 - 65089 38987546-38993208 5663 sequence -
16 Exon 65090 - 65199 38987436-38987545 110 sequence download
16 Intron 65200 - 70433 38982202-38987435 5234 sequence -
17 Exon 70434 - 78510 38974125-38982201 8077 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2 
 Supporting GenBank
accession identifers 		 NM_001013647
 AK301819
 Length  604 597
 Number of ATGs in frame  2 2
 Total number of ATGs  5 10
 Number of GTGs in frame  2 4
 Total number of GTGs  11 10
 Number of CTGs in frame  2 1
 Total number of CTGs  7 8
 Number of micro ORFs in frame  1 0
 Total number of micro ORFs  2 2
 GC percentage  59 52
 Number of pyrimidine tracks  4 3
Close 3' untranslated regions 
 UTR 1 
 Supporting GenBank
accession identifers 		 NM_001013647
AK301819
 Length  8005
 Number of ATGs in frame  45
 Total number of ATGs  150
 Number of GTGs in frame  56
 Total number of GTGs  181
 Number of CTGs in frame  46
 Total number of CTGs  142
 GC percentage  43
 Number of pyrimidine tracks  35
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
No data
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Localization EXONT:000064 Nuclear_localization_signal 4,5 16930 17824
Localization EXONT:000064 Nuclear_localization_signal 15 59326 59337
Localization EXONT:000064 Nuclear_localization_signal 16 65184 65195
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 4,5 16936 17851
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 10,11 33458 36358
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 11,12 36386 49237
Gene RP1-199H16.5
Gene RP1-199H16.5 Gene RP1-199H16.5
Gene RP1-199H16.5 Gene RP1-199H16.5
Gene RP1-199H16.5 Gene RP1-199H16.5
Gene RP1-199H16.5 Gene RP1-199H16.5
Gene RP1-199H16.5 Gene RP1-199H16.5
Gene RP1-199H16.5 Gene RP1-199H16.5
Gene RP1-199H16.5 Gene RP1-199H16.5
Gene RP1-199H16.5 Gene RP1-199H16.5

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 15Exon 16Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 15Exon 16Exon 17Extended region