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Previous gene FasterDB identifier: 2318 - CBY1 (C22orf2, Cby, Chibby, PGEA1, PIGEA-14, PIGEA14) chibby homolog 1 (Drosophila) Next gene
Gene Close
Symbol CBY1
Synonyms C22orf2, Cby, Chibby, PGEA1, PIGEA-14, PIGEA14
Description chibby homolog 1 (Drosophila)
EnsEMBL link ENSG00000100211
Chromosome 22 - forward strand
Chromosomal location
(UCSC link)		 39052643 - 39069856 (17214bp)
Sequence sequence
Associated transcripts AK307265 AK311928 CR602591 NM_001002880 NM_015373 AL136686 AL050345 BC016139 AF331041 CR456410 AB111855 CR619995 AB015347
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 3 15 AK307265
CR602591
NM_001002880
NM_015373
AL136686
AL050345
BC016139
AF331041
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 1 -18 AK311928
Intron retentions Close
 Identifier   Position   Transcript 
IR1 4 AK307265
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 39052643 AK307265
P2 1 3 39052645 AK311928
Protein prediction Close
 Transcript name   Sequence 
AK307265 sequence
AK311928 sequence
CR602591 sequence
NM_001002880 sequence
NM_015373 sequence
AL136686 sequence
AL050345 sequence
BC016139 sequence
AF331041 sequence
CR456410 sequence
AB111855 sequence
CR619995 sequence
AB015347 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 5 15023 39067665 no AK307265 Full_length
PA2 6 16599 39069241 no AK311928 Full_length
PA3 6 17214 39069856 ATTAAA no AL050345 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 2 AK307265
AK311928
NM_015373
AL136686
AL050345
BC016139
AF331041
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 10.65 no CAGgtacgt
S2 5' (donor) 1 -12.95 yes CCGgcttct
S3 5' (donor) 2 10.07 no CAGgtgagg
S4 3' (acceptor) 2 5.4 no ttgctgtgtttatacaatagAAT
S5 5' (donor) 3 7 no TCTgtgagt
S6 3' (acceptor) 3 -17.7 no cagctgcttgtacccctgacTTT
S7 3' (acceptor) 3 9.22 yes ctgactttttctgaccctagGAG
S8 5' (donor) 4 9.6 no CAGgtgagc
S9 3' (acceptor) 4 4.99 no acatagcatctcgcccacagTTG
S10 5' (donor) 5 7.61 no ATGgtgagg
S11 3' (acceptor) 5 9.48 no tggttctgtccttcctccagAGA
S12 3' (acceptor) 6 7.51 no agccgctgcttcactttcagCTT
Conserved exons Close
 Gene identifier mouse   Position human  Position mouse 
17012 3 2
17012 4 3
17012 5 4
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 2
 Transcription termination & last exon(s) 
5 1
6 2
 Exon skipping 
2 7
 Alternative 3' splice sites 
3 1
 Alternative 5' splice sites 
1 1
 Intron retentions 
4 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR) Yes Yes
 
ESRP1/2 (ESRP) Yes
 
FUS Yes
 
HNRNPA1 Yes
 
HNRNPA2B1 Yes
 
HNRNPAB
 
HNRNPC Yes
 
HNRNPF/HNRNPH1 Yes Yes
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM Yes
 
HNRNPU Yes
 
MBNL
 
NOVA1
 
PTBP1/2 (PTB) Yes Yes
 
QKI
 
RBFOX2 (FOX2) Yes
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 (SF2ASF)
 
SRSF2 (SC35)
 
SRSF5 (SRP40)
 
TDP43
 
TIA1/TIAL1 Yes
 
TRA2A
 
TRA2B
 
YBX1 (YB1)
 
Expression Close
 Exon position   Tissues   Cell lines   Cancer cell lines 
1 Expression Expression Expression
2 Expression Expression Expression
3 Expression Expression Expression
4 Expression Expression Expression
5 Expression Expression Expression
6 Expression Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 113 39052643 - 39052755 113 sequence download
1 Intron 114 - 8908 39052756 - 39061550 8795 sequence -
2 Exon 8909 - 9048 39061551 - 39061690 140 sequence download
2 Intron 9049 - 11364 39061691 - 39064006 2316 sequence -
3 Exon 11365 - 11495 39064007 - 39064137 131 sequence download
3 Intron 11496 - 14246 39064138 - 39066888 2751 sequence -
4 Exon 14247 - 14352 39066889 - 39066994 106 sequence download
4 Intron 14353 - 14432 39066995 - 39067074 80 sequence -
5 Exon 14433 - 14551 39067075 - 39067193 119 sequence download
5 Intron 14552 - 16521 39067194 - 39069163 1970 sequence -
6 Exon 16522 - 17214 39069164 - 39069856 693 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 CR602591
NM_001002880
CR456410
 AK307265
NM_015373
AL136686
AL050345
BC016139
AF331041
 AK311928
 Length  278 151 149
 Number of ATGs in frame  1 0 0
 Total number of ATGs  7 1 0
 Number of GTGs in frame  3 0 0
 Total number of GTGs  7 4 4
 Number of CTGs in frame  1 1 1
 Total number of CTGs  5 2 2
 Number of micro ORFs in frame  1 0 0
 Total number of micro ORFs  2 1 0
 GC percentage  53 65 66
 Number of pyrimidine tracks  1 1 1
Close 3' untranslated regions 
 UTR 1   UTR 2 
 Supporting GenBank
accession identifers 		 AK307265
 AL050345
CR619995
NM_001002880
NM_015373
BC016139
AF331041
AL136686
CR602591
CR456410
 Length  630 615
 Number of ATGs in frame  2 4
 Total number of ATGs  7 13
 Number of GTGs in frame  3 9
 Total number of GTGs  11 15
 Number of CTGs in frame  3 3
 Total number of CTGs  12 10
 GC percentage  52 49
 Number of pyrimidine tracks  3 6
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 hsa-miR-330-5p 16600 - 16611 39069242 - 39069253 miranda
M2 hsa-miR-326 16600 - 16611 39069242 - 39069253 miranda
M3 hsa-miR-106b 17150 - 17172 39069792 - 39069814 miranda
M4 hsa-miR-301b 17159 - 17184 39069801 - 39069826 miranda
M5 hsa-miR-301a 17161 - 17184 39069803 - 39069826 miranda
M6 hsa-miR-130a 17162 - 17184 39069804 - 39069826 miranda
M7 hsa-miR-454 17162 - 17184 39069804 - 39069826 miranda
M8 hsa-miR-130b 17162 - 17184 39069804 - 39069826 miranda
M9 hsa-miR-19a 17163 - 17183 39069805 - 39069825 miranda
M10 hsa-miR-19b 17163 - 17183 39069805 - 39069825 miranda
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 3,4 11418 14273
Structure EXONT:000035 Coiled_coil 5,6 14447 16593
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 5 14456 14485
PTM EXONT:000162 O-phospho-L-threonine 3 11436 11438
PTM EXONT:000161 O-phospho-L-serine 3 11442 11444
PTM EXONT:000161 O-phospho-L-serine 3 11475 11477
PTM EXONT:000161 O-phospho-L-serine 3 11493 11495
Gene CBY1
Gene CBY1 Gene CBY1
Gene CBY1 Gene CBY1
Gene CBY1 Gene CBY1
Gene CBY1 Gene CBY1
Gene CBY1 Gene CBY1
Gene CBY1 Gene CBY1
Gene CBY1 Gene CBY1
Gene CBY1 Gene CBY1

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Extended region