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Previous gene FasterDB identifier: 13350 - TRAIP (RNF206, TRIP) TRAF interacting protein Next gene
Gene Close
Symbol TRAIP
Synonyms RNF206, TRIP
Description TRAF interacting protein
EnsEMBL link ENSG00000183763
Chromosome 3 - reverse strand
Chromosomal location
(UCSC link)		 49866028 - 49893997 (27970bp)
Sequence sequence
Associated transcripts AK295780 U77845 NM_005879 AK292172 BC019283 BC000310 AK225873 CR623917 AB451320 AB451449
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 49893997 AK295780
P2 1 18 49893980 AK292172
Protein prediction Close
 Transcript name   Sequence 
AK295780 sequence
U77845 sequence
NM_005879 sequence
AK292172 sequence
BC019283 sequence
BC000310 sequence
AK225873 sequence
CR623917 sequence
AB451320 sequence
AB451449 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 5 13420 49880578 no AK295780 Full_length
PA2 15 27818 49866180 no AK292172 Full_length
PA3 15 27970 49866028 ATTAAA yes NM_005879 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 6 AK225873
ES2 7 AK225873
ES3 8 AK225873
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 8.95 no GTGgtgagt
S2 5' (donor) 2 9.22 no CAGgtgaga
S3 3' (acceptor) 2 8.23 no tgttctgcttttcattccagCCT
S4 5' (donor) 3 9.16 no AAGgtaccc
S5 3' (acceptor) 3 10.31 no taccttgttctcccatccagGTT
S6 5' (donor) 4 10.47 no AAGgtgagt
S7 3' (acceptor) 4 7.98 no ttgtgggtattgcctttcagAAT
S8 5' (donor) 5 6.84 no AAAgtaggt
S9 3' (acceptor) 5 5.88 no gccctctacccctgctccagACA
S10 5' (donor) 6 7.39 no GCAgtgagt
S11 3' (acceptor) 6 6.08 no tgggtgtatttgctcttcagAAG
S12 5' (donor) 7 4.88 no GAAgtgcgt
S13 3' (acceptor) 7 7.45 no gggctgggtgtatttttcagGAT
S14 5' (donor) 8 9.01 no AAGgtaact
S15 3' (acceptor) 8 4.56 no tttccatggccacattgcagAGA
S16 5' (donor) 9 7.61 no ATGgtgagg
S17 3' (acceptor) 9 6.32 no ttccctacactttcttatagTTG
S18 5' (donor) 10 6.36 no GAGgtttgt
S19 3' (acceptor) 10 7.34 no cttttctttccctccccaagAGC
S20 5' (donor) 11 8.34 no ACAgtgagt
S21 3' (acceptor) 11 5.63 no caggtcatctctgccttcagCCC
S22 5' (donor) 12 10.57 no AAGgtaaga
S23 3' (acceptor) 12 9.89 no cttctctctcattcttgtagCTC
S24 5' (donor) 13 8.95 no GTGgtgagt
S25 3' (acceptor) 13 10.63 no ccctggggtcttccctgcagGAG
S26 5' (donor) 14 -3.5 no CCTgtatcc
S27 3' (acceptor) 14 11.58 no atctcttccttccaccctagGTA
S28 3' (acceptor) 15 -0.92 no ttccttgacagctcctccagACT
Conserved exons Close
 Gene identifier mouse   Position human  Position mouse 
8427 1 2
8427 2 3
8427 3 4
8427 4 6
8427 5 7
8427 6 8
8427 7 9
8427 8 10
8427 9 11
8427 10 12
8427 11 13
8427 12 15
8427 13 16
8427 14 17
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 2
 Transcription termination & last exon(s) 
5 1
15 2
 Exon skipping 
6 1
7 1
8 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR) Yes Yes
 
ESRP1/2 (ESRP) Yes
 
FUS Yes
 
HNRNPA1 Yes
 
HNRNPA2B1 Yes
 
HNRNPAB
 
HNRNPC Yes
 
HNRNPF/HNRNPH1 Yes Yes
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM Yes
 
HNRNPU Yes
 
MBNL
 
NOVA1
 
PTBP1/2 (PTB) Yes Yes
 
QKI
 
RBFOX2 (FOX2) Yes
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 (SF2ASF)
 
SRSF2 (SC35)
 
SRSF5 (SRP40)
 
TDP43
 
TIA1/TIAL1 Yes
 
TRA2A
 
TRA2B
 
YBX1 (YB1)
 
Expression Close
 Exon position   Tissues   Cell lines   Cancer cell lines 
1 Expression Expression Expression
2 Expression Expression Expression
3 Expression Expression Expression
4 Expression Expression Expression
5 Expression Expression Expression
6 Expression Expression Expression
7 Expression Expression Expression
8 Expression Expression Expression
9 Expression Expression Expression
10 Expression Expression Expression
11 Expression Expression Expression
12 Expression Expression Expression
13 Expression Expression Expression
14 Expression Expression Expression
15 Expression Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 209 49893789-49893997 209 sequence download
1 Intron 210 - 8364 49885634-49893788 8155 sequence -
2 Exon 8365 - 8422 49885576-49885633 58 sequence download
2 Intron 8423 - 8956 49885042-49885575 534 sequence -
3 Exon 8957 - 9040 49884958-49885041 84 sequence download
3 Intron 9041 - 11984 49882014-49884957 2944 sequence -
4 Exon 11985 - 12024 49881974-49882013 40 sequence download
4 Intron 12025 - 12636 49881362-49881973 612 sequence -
5 Exon 12637 - 12764 49881234-49881361 128 sequence download
5 Intron 12765 - 14017 49879981-49881233 1253 sequence -
6 Exon 14018 - 14112 49879886-49879980 95 sequence download
6 Intron 14113 - 14625 49879373-49879885 513 sequence -
7 Exon 14626 - 14739 49879259-49879372 114 sequence download
7 Intron 14740 - 15492 49878506-49879258 753 sequence -
8 Exon 15493 - 15580 49878418-49878505 88 sequence download
8 Intron 15581 - 16191 49877807-49878417 611 sequence -
9 Exon 16192 - 16281 49877717-49877806 90 sequence download
9 Intron 16282 - 16704 49877294-49877716 423 sequence -
10 Exon 16705 - 16793 49877205-49877293 89 sequence download
10 Intron 16794 - 24496 49869502-49877204 7703 sequence -
11 Exon 24497 - 24649 49869349-49869501 153 sequence download
11 Intron 24650 - 26496 49867502-49869348 1847 sequence -
12 Exon 26497 - 26545 49867453-49867501 49 sequence download
12 Intron 26546 - 26798 49867200-49867452 253 sequence -
13 Exon 26799 - 26948 49867050-49867199 150 sequence download
13 Intron 26949 - 27056 49866942-49867049 108 sequence -
14 Exon 27057 - 27107 49866891-49866941 51 sequence download
14 Intron 27108 - 27339 49866659-49866890 232 sequence -
15 Exon 27340 - 27970 49866028-49866658 631 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 AK295780
NM_005879
U77845
BC019283
BC000310
 AK292172
 AK225873
CR623917
 Length  111 94 469
 Number of ATGs in frame  0 0 1
 Total number of ATGs  0 0 6
 Number of GTGs in frame  1 1 6
 Total number of GTGs  4 3 12
 Number of CTGs in frame  0 0 2
 Total number of CTGs  1 0 7
 Number of micro ORFs in frame  0 0 1
 Total number of micro ORFs  0 0 1
 GC percentage  62 61 55
 Number of pyrimidine tracks  0 0 1
Close 3' untranslated regions 
 UTR 1   UTR 2 
 Supporting GenBank
accession identifers 		 AK295780
 NM_005879
BC019283
BC000310
AK225873
U77845
CR623917
AK292172
 Length  620 508
 Number of ATGs in frame  1 6
 Total number of ATGs  5 11
 Number of GTGs in frame  10 9
 Total number of GTGs  19 20
 Number of CTGs in frame  3 4
 Total number of CTGs  7 10
 GC percentage  50 53
 Number of pyrimidine tracks  5 5
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 hsa-miR-328 12936 - 12958 49881040 - 49881062 miranda
M2 hsa-miR-149 13138 - 13160 49880838 - 49880860 miranda
M3 hsa-miR-708 13151 - 13175 49880823 - 49880847 miranda
Group 2
M1 hsa-miR-370 27687 - 27694 49866304 - 49866311 targetscan
Group 3
M1 hsa-miR-590-3p 27929 - 27950 49866048 - 49866069 miranda
M2 hsa-miR-590-3p 27942 - 27949 49866049 - 49866056 pita
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Binding EXONT:003016 Zinc finger, RING-type 1,2 126 8416
Binding EXONT:000073 Zinc_finger_binding_site 1,2 130 8416
Binding EXONT:001885 Protein binding 15 27349 27387
Localization EXONT:000067 Nuclear_export_signal 9,10 16273 16737
Localization EXONT:000064 Nuclear_localization_signal 13 26907 26924
Structure EXONT:000035 Coiled_coil 3,4,5,6,7 9008 14653
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 6 14048 14089
Structure EXONT:000035 Coiled_coil 7,8,9,10 14723 16749
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 11 24573 24599
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 13 26808 26831
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 13 26898 26942
PTM EXONT:000162 O-phospho-L-threonine 5 12705 12707
PTM EXONT:000797 Ubiquitinylated lysine 6 14057 14059
PTM EXONT:000797 Ubiquitinylated lysine 7 14735 14737
PTM EXONT:000164 O4'-phospho-L-tyrosine 9 16204 16206
PTM EXONT:000161 O-phospho-L-serine 9 16261 16263
PTM EXONT:000161 O-phospho-L-serine 12 26498 26500
PTM EXONT:000161 O-phospho-L-serine 13 26802 26804
Unclassified EXONT:002147 Zinc finger, RING/FYVE/PHD-type 1,2,3 126 8983
Unclassified EXONT:003372 Prefoldin 5,6,7,8,9 12711 16203
Gene TRAIP
Gene TRAIP Gene TRAIP
Gene TRAIP Gene TRAIP
Gene TRAIP Gene TRAIP
Gene TRAIP Gene TRAIP
Gene TRAIP Gene TRAIP
Gene TRAIP Gene TRAIP
Gene TRAIP Gene TRAIP
Gene TRAIP Gene TRAIP

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 15Extended region