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Previous gene FasterDB identifier: 13461 - CAMKV (MGC8407, VACAMKL) CaM kinase-like vesicle-associated Next gene
Gene Close
Symbol CAMKV
Synonyms MGC8407, VACAMKL
Description CaM kinase-like vesicle-associated
EnsEMBL link ENSG00000164076
Chromosome 3 - reverse strand
Chromosomal location
(UCSC link)		 49895421 - 49907388 (11968bp)
Sequence sequence
Associated transcripts AK315525 AK074856 NM_024046 AK075294 AK295588 AK074899 AK297258 AK299953 AL136697 BX647074 AK297437 BC017363 BC001921 BC005828 BC000497 BC019256 CR533508 AK226073
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 5 40 AK299953
ASS2 8 8 AL136697
CR533508
ASS3 6 7 AK315525
AK074856
NM_024046
AK075294
AK074899
AK297258
AK299953
AL136697
BX647074
AK297437
BC017363
BC001921
BC005828
BC000497
BC019256
CR533508
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 3 -41 AK297437
ASS2 2 -38 AK297258
ASS3 4 -4 AK315525
AK074856
NM_024046
AK075294
AK074899
AK297258
AK299953
AL136697
BX647074
AK297437
BC017363
BC001921
BC005828
BC000497
BC019256
CR533508
Intron retentions Close
 Identifier   Position   Transcript 
IR1 6 BX647074
Exon deletions Close
 Identifier   Position   Transcript 
ED1 11 AK075294
AK295588
AK074899
AK297437
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 49907388 AK315525
P2 1 20 49907369 AK074856
P3 1 39 49907350 AK075294
P4 1 47 49907342 AK295588
P5 1 50 49907339 AK074899
AK297258
P6 1 51 49907338 AK299953
P7 1 53 49907336 AK297437
Protein prediction Close
 Transcript name   Sequence 
AK315525 sequence
AK074856 sequence
NM_024046 sequence
AK075294 sequence
AK295588 sequence
AK074899 sequence
AK297258 sequence
AK299953 sequence
AL136697 sequence
BX647074 sequence
AK297437 sequence
BC017363 sequence
BC001921 sequence
BC005828 sequence
BC000497 sequence
BC019256 sequence
CR533508 sequence
AK226073 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 10 9756 49897633 no AK299953 Full_length
PA2 11 10695 49896694 no AK297258 Full_length
PA3 11 10695 49896694 no AK297437 Full_length
PA4 11 11968 49895421 AATAAA yes BX647074 Cdna
PA5 11 12741 49894648 AATAAA no DB367081 3prime_est

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 5 AK295588
ES2 7 AL136697
CR533508
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 9.13 no CAGgtgcgg
S2 5' (donor) 2 9.22 no GACgtgagt
S3 3' (acceptor) 2 9.03 no agaccccattgtgcccgcagGTT
S4 5' (donor) 2 5.88 yes GAGgtgact
S5 5' (donor) 3 7.77 no GATgtgagt
S6 3' (acceptor) 3 5.46 no tgggtgcctgtcggctgcagTGA
S7 5' (donor) 3 8.17 yes AAGgtgcgg
S8 5' (donor) 4 -5.16 no TGAgtgtgg
S9 3' (acceptor) 4 7.94 no gctcccctccctgtcgccagGGT
S10 5' (donor) 4 7.39 yes GCTgtgagt
S11 5' (donor) 5 9.16 no AAGgtgagg
S12 3' (acceptor) 5 5.93 no caggggctggtgtccctcagGGC
S13 3' (acceptor) 5 3.22 yes ttgactggatcctggaccagGGC
S14 5' (donor) 6 1.08 no TGGgcaagc
S15 3' (acceptor) 6 -2.36 no cacccacatgctattctcacACC
S16 3' (acceptor) 6 5.69 yes atgctattctcacaccacagCTG
S17 5' (donor) 7 7.21 no CCTgtgagt
S18 3' (acceptor) 7 5.24 no gatgggcgctgtgtttgtagCCC
S19 5' (donor) 8 10.07 no CAGgtgagg
S20 3' (acceptor) 8 9.08 no gtgacccttcccccatgcagGCT
S21 3' (acceptor) 8 -0.69 yes tcccccatgcaggctttcagGCA
S22 5' (donor) 9 6.64 no GTGgtgagc
S23 3' (acceptor) 9 9.28 no cttcttggttttgtccacagCCA
S24 5' (donor) 10 10.51 no AAGgtaagg
S25 3' (acceptor) 10 8.64 no cacacttgcaccctttccagGAT
S26 3' (acceptor) 11 7.89 no ctccactgtgctcctttcagAAG
Conserved exons Close
 Gene identifier mouse   Position human  Position mouse 
8383 1 1
8383 2 2
8383 3 3
8383 4 4
8383 5 5
8383 6 6
8383 7 7
8383 8 8
8383 9 9
8383 10 10
8383 11 11
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 7
 Transcription termination & last exon(s) 
10 1
11 4
 Exon skipping 
5 1
7 2
 Alternative 3' splice sites 
5 1
6 1
8 1
 Alternative 5' splice sites 
2 1
3 1
4 1
 Exon deletions 
11 4
 Intron retentions 
6 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR) Yes Yes
 
ESRP1/2 (ESRP) Yes
 
FUS Yes
 
HNRNPA1 Yes
 
HNRNPA2B1 Yes
 
HNRNPAB
 
HNRNPC Yes
 
HNRNPF/HNRNPH1 Yes Yes
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM Yes
 
HNRNPU Yes
 
MBNL
 
NOVA1
 
PTBP1/2 (PTB) Yes Yes
 
QKI
 
RBFOX2 (FOX2) Yes
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 (SF2ASF)
 
SRSF2 (SC35)
 
SRSF5 (SRP40)
 
TDP43
 
TIA1/TIAL1 Yes
 
TRA2A
 
TRA2B
 
YBX1 (YB1)
 
Expression Close
 Exon position   Tissues   Cell lines   Cancer cell lines 
1 Expression Expression Expression
2 Expression Expression Expression
3 Expression Expression Expression
4 Expression Expression Expression
5 Expression Expression Expression
6 Expression Expression Expression
7 Expression Expression Expression
8 Expression Expression Expression
9 Expression Expression Expression
10 Expression Expression Expression
11 Expression Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 198 49907191-49907388 198 sequence download
1 Intron 199 - 7553 49899836-49907190 7355 sequence -
2 Exon 7554 - 7662 49899727-49899835 109 sequence download
2 Intron 7663 - 7779 49899610-49899726 117 sequence -
3 Exon 7780 - 7911 49899478-49899609 132 sequence download
3 Intron 7912 - 8090 49899299-49899477 179 sequence -
4 Exon 8091 - 8169 49899220-49899298 79 sequence download
4 Intron 8170 - 8378 49899011-49899219 209 sequence -
5 Exon 8379 - 8517 49898872-49899010 139 sequence download
5 Intron 8518 - 8648 49898741-49898871 131 sequence -
6 Exon 8649 - 8776 49898613-49898740 128 sequence download
6 Intron 8777 - 8937 49898452-49898612 161 sequence -
7 Exon 8938 - 9013 49898376-49898451 76 sequence download
7 Intron 9014 - 9103 49898286-49898375 90 sequence -
8 Exon 9104 - 9240 49898149-49898285 137 sequence download
8 Intron 9241 - 9406 49897983-49898148 166 sequence -
9 Exon 9407 - 9485 49897904-49897982 79 sequence download
9 Intron 9486 - 9697 49897692-49897903 212 sequence -
10 Exon 9698 - 9785 49897604-49897691 88 sequence download
10 Intron 9786 - 10074 49897315-49897603 289 sequence -
11 Exon 10075 - 11968 49895421-49897314 1894 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4   UTR 5   UTR 6 
 Supporting GenBank
accession identifers 		 AK315525
NM_024046
 AK074856
 AK299953
 AK297258
 BX647074
 AL136697
CR533508
BC017363
BC001921
BC005828
BC000497
BC019256
 Length  212 193 162 350 864 876
 Number of ATGs in frame  1 1 1 0 1 3
 Total number of ATGs  1 1 1 2 8 12
 Number of GTGs in frame  7 7 6 4 7 21
 Total number of GTGs  10 10 9 13 34 31
 Number of CTGs in frame  1 1 1 1 3 13
 Total number of CTGs  4 4 2 7 20 20
 Number of micro ORFs in frame  1 1 1 0 0 2
 Total number of micro ORFs  1 1 1 2 1 2
 GC percentage  74 72 71 62 58 55
 Number of pyrimidine tracks  1 1 1 1 1 3
Close 3' untranslated regions 
 UTR 1   UTR 2 
 Supporting GenBank
accession identifers 		 AK299953
 BX647074
NM_024046
AL136697
BC017363
BC001921
BC005828
BC000497
BC019256
AK074856
AK226073
CR533508
AK297258
 Length  441 1330
 Number of ATGs in frame  11 3
 Total number of ATGs  13 21
 Number of GTGs in frame  6 16
 Total number of GTGs  16 44
 Number of CTGs in frame  5 11
 Total number of CTGs  10 32
 GC percentage  51 56
 Number of pyrimidine tracks  2 13
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 hsa-miR-324-5p 10664 - 10671 49896718 - 49896725 pictar
M2 hsa-miR-1260 10679 - 10685 49896704 - 49896710 pita
M3 hsa-miR-532-3p 10680 - 10686 49896703 - 49896709 pita
Group 2
M1 hsa-miR-1300 10700 - 10706 49896683 - 49896689 pita
M2 hsa-miR-193a-3p 10830 - 10837 49896552 - 49896559 pita
M3 hsa-miR-193b 10831 - 10837 49896552 - 49896558 pita
M4 hsa-miR-1291 10840 - 10846 49896543 - 49896549 pita
M5 hsa-miR-138 10848 - 10855 49896534 - 49896541 pictar
M6 hsa-miR-548p 10887 - 10893 49896496 - 49896502 pita
M7 hsa-miR-621 10889 - 10896 49896493 - 49896500 pita
M8 hsa-miR-127-5p 10894 - 10900 49896489 - 49896495 pita
M9 hsa-miR-138 10898 - 10905 49896484 - 49896491 pictar
M10 hsa-miR-582-3p 10900 - 10906 49896483 - 49896489 pita
M11 hsa-miR-324-5p 10904 - 10926 49896463 - 49896485 miranda
M12 hsa-miR-188-3p 10916 - 10922 49896467 - 49896473 pita
M13 hsa-miR-324-5p 10919 - 10926 49896463 - 49896470 pictar
M14 hsa-miR-324-5p 10919 - 10925 49896464 - 49896470 pita
M15 hsa-miR-103 10922 - 10929 49896460 - 49896467 pictar
M16 hsa-miR-195 10922 - 10929 49896460 - 49896467 pictar
M17 hsa-miR-107 10922 - 10928 49896461 - 49896467 pita
M18 hsa-miR-16 10922 - 10929 49896460 - 49896467 pictar
M19 hsa-miR-15b 10922 - 10929 49896460 - 49896467 pictar
M20 hsa-miR-15a 10922 - 10929 49896460 - 49896467 pictar
M21 hsa-miR-107 10922 - 10929 49896460 - 49896467 pictar
M22 hsa-miR-103 10922 - 10928 49896461 - 49896467 pita
M23 hsa-miR-15a 10923 - 10929 49896460 - 49896466 pita
M24 hsa-miR-424 10923 - 10929 49896460 - 49896466 pita
M25 hsa-miR-195 10923 - 10929 49896460 - 49896466 pita
M26 hsa-miR-15b 10923 - 10929 49896460 - 49896466 pita
M27 hsa-miR-497 10923 - 10929 49896460 - 49896466 pita
M28 hsa-miR-16 10923 - 10929 49896460 - 49896466 pita
M29 hsa-miR-125a-5p 10939 - 10945 49896444 - 49896450 pita
M30 hsa-miR-125b 10939 - 10945 49896444 - 49896450 pita
M31 hsa-miR-1225-3p 10944 - 10950 49896439 - 49896445 pita
M32 hsa-miR-15b 10948 - 10955 49896434 - 49896441 pictar
M33 hsa-miR-1266 11045 - 11052 49896337 - 49896344 pita
M34 hsa-miR-138 11060 - 11067 49896322 - 49896329 pictar
M35 hsa-miR-107 11125 - 11132 49896257 - 49896264 pictar
M36 hsa-miR-103 11125 - 11132 49896257 - 49896264 pictar
M37 hsa-miR-15a 11126 - 11133 49896256 - 49896263 pictar
M38 hsa-miR-544 11147 - 11170 49896219 - 49896242 miranda
M39 hsa-miR-195 11148 - 11155 49896234 - 49896241 pictar
M40 hsa-miR-544 11162 - 11170 49896219 - 49896227 targetscan
M41 hsa-miR-422a 11175 - 11196 49896193 - 49896214 miranda
M42 hsa-miR-378 11176 - 11196 49896193 - 49896213 miranda
M43 hsa-miR-195 11215 - 11222 49896167 - 49896174 pictar
M44 hsa-miR-138 11222 - 11229 49896160 - 49896167 pictar
M45 hsa-miR-15a 11566 - 11573 49895816 - 49895823 pictar
M46 hsa-miR-107 11566 - 11573 49895816 - 49895823 pictar
M47 hsa-miR-103 11566 - 11573 49895816 - 49895823 pictar
M48 hsa-miR-195 11566 - 11573 49895816 - 49895823 pictar
M49 hsa-miR-16 11566 - 11573 49895816 - 49895823 pictar
M50 hsa-miR-15b 11566 - 11573 49895816 - 49895823 pictar
M51 hsa-miR-107 11625 - 11632 49895757 - 49895764 pictar
M52 hsa-miR-329 11898 - 11904 49895485 - 49895491 pita
M53 hsa-miR-362-3p 11898 - 11904 49895485 - 49895491 pita
M54 hsa-miR-377 11900 - 11906 49895483 - 49895489 pita
M55 hsa-miR-1280 11911 - 11917 49895472 - 49895478 pita
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Catalytic EXONT:002212 Protein kinase-like domain 2,3,4,5,6,7,8,9,10,11 7598 10083
Catalytic EXONT:002406 Protein kinase domain 2,3,4,5,6,7,8,9,10 7637 9701
Catalytic EXONT:003188 Serine/threonine- /dual specificity protein kinase, catalytic domain 2,3,4,5,6,7,8,9,10 7637 9701
Binding EXONT:002406 Protein kinase domain 2,3,4,5,6,7,8,9,10 7637 9701
Binding EXONT:003188 Serine/threonine- /dual specificity protein kinase, catalytic domain 2,3,4,5,6,7,8,9,10 7637 9701
Localization EXONT:000064 Nuclear_localization_signal 10,11 9783 10116
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 3,4 7853 8111
Structure EXONT:000024 Compositionally_biased_region_of_peptide 11 10135 10608
PTM EXONT:000161 O-phospho-L-serine 2 7619 7621
PTM EXONT:000180 N-acetylated L-lysine 3 7826 7828
PTM EXONT:000192 N6-acetyl-L-lysine 3 7826 7828
PTM EXONT:000180 N-acetylated L-lysine 3 7841 7843
PTM EXONT:000192 N6-acetyl-L-lysine 3 7841 7843
PTM EXONT:000180 N-acetylated L-lysine 3 7868 7870
PTM EXONT:000192 N6-acetyl-L-lysine 3 7868 7870
PTM EXONT:000797 Ubiquitinylated lysine 3 7877 7879
PTM EXONT:000162 O-phospho-L-threonine 11 10507 10509
PTM EXONT:000164 O4'-phospho-L-tyrosine 11 10603 10605
PTM EXONT:000161 O-phospho-L-serine 11 10615 10617
Gene CAMKV
Gene CAMKV Gene CAMKV
Gene CAMKV Gene CAMKV
Gene CAMKV Gene CAMKV
Gene CAMKV Gene CAMKV
Gene CAMKV Gene CAMKV
Gene CAMKV Gene CAMKV
Gene CAMKV Gene CAMKV
Gene CAMKV Gene CAMKV

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Extended region