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Previous gene FasterDB identifier: 8383 - Camkv (ENSMUSG00000032936) CaM kinase-like vesicle-associated Gene Next gene
Gene Close
Symbol Camkv
Synonyms ENSMUSG00000032936
Description CaM kinase-like vesicle-associated Gene
EnsEMBL link ENSMUSG00000032936
Chromosome 9 - forward strand
Chromosomal location
(UCSC link)		 107838245 - 107852655 (14411bp)
Sequence sequence
Associated transcripts AK085143 BC017634 NM_145621 BC111033 BC022169 AK147323 BC086762
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
IR1 4 BC022169
BC086762
IR2 6 BC022169
Exon deletions Close
 Identifier   Position   Transcript 
ED1 11 AK085143
BC022169
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 107838245 AK085143
P2 1 19 107838263 AK147323
Protein prediction Close
 Transcript name   Sequence 
AK085143 sequence
BC017634 sequence
NM_145621 sequence
BC111033 sequence
BC022169 sequence
AK147323 sequence
BC086762 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 11 13770 107852014 AATAAA no AK147323 Full_length
PA2 11 14411 107852655 AATAAA no AK085143 Full_length

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
No data
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 9.13 no CAGgtgcgg
S2 5' (donor) 2 9.22 no GACgtgagt
S3 3' (acceptor) 2 7.89 no ccatcctgtttgcaccttagAGC
S4 5' (donor) 3 7.77 no GATgtgagt
S5 3' (acceptor) 3 3.89 no ggtgtgcctgctggcttcagTGA
S6 5' (donor) 4 7.39 no GCTgtgagt
S7 3' (acceptor) 4 8.4 no gaccctcccactgtcactagGGT
S8 5' (donor) 5 10.51 no AAGgtaagg
S9 3' (acceptor) 5 5.93 no caggggctggtgtccctcagGGC
S10 5' (donor) 6 1.33 no TGGgcaagg
S11 3' (acceptor) 6 8.67 no taccattctctcccgaacagCTG
S12 5' (donor) 7 7.21 no CCTgtgagt
S13 3' (acceptor) 7 7.98 no aaccacttttttttttttagCAC
S14 5' (donor) 8 10.07 no CAGgtgagg
S15 3' (acceptor) 8 4.82 no ggtgaccctactccatgtagGCT
S16 5' (donor) 9 8.27 no ATGgtgagc
S17 3' (acceptor) 9 8.04 no atccctggctttgtccccagCCA
S18 5' (donor) 10 10.08 no AAGgtaggc
S19 3' (acceptor) 10 10.48 no tgcacttgcctcctttctagGAT
S20 3' (acceptor) 11 10.5 no cttcactgtcctccttgcagAAG
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
13461 1 1
13461 2 2
13461 3 3
13461 4 4
13461 5 5
13461 6 6
13461 7 7
13461 8 8
13461 9 9
13461 10 10
13461 11 11
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 2
 Transcription termination & last exon(s) 
11 2
 Exon deletions 
11 2
 Intron retentions 
4 2
6 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
3 Expression Expression
4 Expression Expression
5 Expression Expression
6 Expression Expression
7 Expression Expression
8 Expression Expression
9 Expression Expression
10 Expression Expression
11 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 138 107838245 - 107838382 138 sequence download
1 Intron 139 - 9365 107838383 - 107847609 9227 sequence -
2 Exon 9366 - 9469 107847610 - 107847713 104 sequence download
2 Intron 9470 - 9575 107847714 - 107847819 106 sequence -
3 Exon 9576 - 9707 107847820 - 107847951 132 sequence download
3 Intron 9708 - 9876 107847952 - 107848120 169 sequence -
4 Exon 9877 - 9951 107848121 - 107848195 75 sequence download
4 Intron 9952 - 10165 107848196 - 107848409 214 sequence -
5 Exon 10166 - 10304 107848410 - 107848548 139 sequence download
5 Intron 10305 - 10426 107848549 - 107848670 122 sequence -
6 Exon 10427 - 10547 107848671 - 107848791 121 sequence download
6 Intron 10548 - 10704 107848792 - 107848948 157 sequence -
7 Exon 10705 - 10780 107848949 - 107849024 76 sequence download
7 Intron 10781 - 10869 107849025 - 107849113 89 sequence -
8 Exon 10870 - 11006 107849114 - 107849250 137 sequence download
8 Intron 11007 - 11168 107849251 - 107849412 162 sequence -
9 Exon 11169 - 11247 107849413 - 107849491 79 sequence download
9 Intron 11248 - 11466 107849492 - 107849710 219 sequence -
10 Exon 11467 - 11554 107849711 - 107849798 88 sequence download
10 Intron 11555 - 11830 107849799 - 107850074 276 sequence -
11 Exon 11831 - 14411 107850075 - 107852655 2581 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 BC017634
NM_145621
BC111033
 AK147323
 BC022169
BC086762
 Length  141 129 1014
 Number of ATGs in frame  0 0 2
 Total number of ATGs  1 0 11
 Number of GTGs in frame  3 3 12
 Total number of GTGs  9 8 37
 Number of CTGs in frame  0 0 4
 Total number of CTGs  2 2 22
 Number of micro ORFs in frame  0 0 0
 Total number of micro ORFs  1 0 2
 GC percentage  70 71 57
 Number of pyrimidine tracks  1 1 4
Close 3' untranslated regions 
 UTR 1 
 Supporting GenBank
accession identifers 		 NM_145621
BC017634
AK147323
BC111033
BC086762
BC022169
 Length  1351
 Number of ATGs in frame  8
 Total number of ATGs  26
 Number of GTGs in frame  20
 Total number of GTGs  45
 Number of CTGs in frame  11
 Total number of CTGs  32
 GC percentage  56
 Number of pyrimidine tracks  15
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-669f 12497 - 12503 107850741 - 107850747 pita
M2 mmu-miR-138 12639 - 12646 107850883 - 107850890 pictar
M3 mmu-miR-762 12640 - 12647 107850884 - 107850891 pita
M4 mmu-miR-693-5p 12662 - 12668 107850906 - 107850912 pita
M5 mmu-miR-742 12663 - 12670 107850907 - 107850914 pita
M6 mmu-miR-743a 12672 - 12678 107850916 - 107850922 pita
M7 mmu-miR-743b-3p 12672 - 12678 107850916 - 107850922 pita
M8 mmu-miR-138 12688 - 12695 107850932 - 107850939 pictar
M9 mmu-miR-140_star 12705 - 12712 107850949 - 107850956 pictar
M10 mmu-miR-188-3p 12705 - 12711 107850949 - 107850955 pita
M11 mmu-miR-324-5p 12708 - 12714 107850952 - 107850958 pita
M12 mmu-miR-103 12711 - 12717 107850955 - 107850961 pita
M13 mmu-miR-107 12711 - 12717 107850955 - 107850961 pita
M14 mmu-miR-195 12712 - 12718 107850956 - 107850962 pita
M15 mmu-miR-497 12712 - 12718 107850956 - 107850962 pita
M16 mmu-miR-15a 12712 - 12718 107850956 - 107850962 pita
M17 mmu-miR-322 12712 - 12718 107850956 - 107850962 pita
M18 mmu-miR-15b 12712 - 12718 107850956 - 107850962 pita
M19 mmu-miR-16 12712 - 12718 107850956 - 107850962 pita
M20 mmu-miR-384 12720 - 12727 107850964 - 107850971 pictar
M21 mmu-miR-125a-5p 12728 - 12734 107850972 - 107850978 pita
M22 mmu-miR-351 12728 - 12734 107850972 - 107850978 pita
M23 mmu-miR-125b-5p 12728 - 12734 107850972 - 107850978 pita
M24 mmu-miR-450b-5p 12784 - 12790 107851028 - 107851034 pita
M25 mmu-miR-452 12784 - 12791 107851028 - 107851035 pita
M26 mmu-miR-138 12842 - 12849 107851086 - 107851093 pictar
M27 mmu-miR-362-3p 12885 - 12892 107851129 - 107851136 pita
M28 mmu-miR-329 12886 - 12892 107851130 - 107851136 pita
M29 mmu-miR-466i 12887 - 12893 107851131 - 107851137 pita
M30 mmu-miR-220 12895 - 12902 107851139 - 107851146 pita
M31 mmu-miR-140_star 12895 - 12902 107851139 - 107851146 pictar
M32 mmu-miR-384 12915 - 12922 107851159 - 107851166 pictar
M33 mmu-miR-544 12918 - 12942 107851162 - 107851186 miranda
M34 mmu-miR-138 13194 - 13201 107851438 - 107851445 pictar
M35 mmu-miR-384 13206 - 13213 107851450 - 107851457 pictar
M36 mmu-miR-138 13227 - 13234 107851471 - 107851478 pictar
M37 mmu-miR-138 13426 - 13433 107851670 - 107851677 pictar
M38 mmu-miR-379 13465 - 13487 107851709 - 107851731 miranda
M39 mmu-miR-138 13557 - 13564 107851801 - 107851808 pictar
M40 mmu-miR-293 13648 - 13655 107851892 - 107851899 pictar
M41 mmu-miR-292-3p 13648 - 13655 107851892 - 107851899 pictar
M42 mmu-miR-702 13715 - 13721 107851959 - 107851965 pita
M43 mmu-miR-450b-5p 13761 - 13767 107852005 - 107852011 pita
M44 mmu-miR-879 13766 - 13772 107852010 - 107852016 pita
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Binding EXONT:006096 Myc-type, basic helix-loop-helix (bHLH) domain 1,2,3 42 1749
Binding EXONT:003710 Orange 4 2118 2210
Localization EXONT:000064 Nuclear_localization_signal 2 988 999
Localization EXONT:000067 Nuclear_export_signal 2 1000 1047
Localization EXONT:000017 Cilia targeting sequence 3 1735 1749
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 1,2 9 981
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 3,4 1738 2087
Structure EXONT:000024 Compositionally_biased_region_of_peptide 4 2226 2519
PTM EXONT:000161 O-phospho-L-serine 4 2352 2354
Gene Camkv

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Extended region