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Previous gene FasterDB identifier: 8477 - Uba7 (Ube1l) ubiquitin-like modifier activating enzyme 7 Gene Next gene
Gene Close
Symbol Uba7
Synonyms Ube1l
Description ubiquitin-like modifier activating enzyme 7 Gene
EnsEMBL link ENSMUSG00000032596
Chromosome 9 - forward strand
Chromosomal location
(UCSC link)		 107877891 - 107886389 (8499bp)
Sequence sequence
Associated transcripts AK054410 AK089235 AK004894 NM_023738 AK170644 AK170421 AK089256 AK172467 BC138843 AK129009 BC037693 AF288694 AK157941 BC022160 BC094906
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 21 128 AK172467
ASS2 5 55 AK054410
AK089235
AK004894
NM_023738
AK170644
AK170421
AK172467
BC138843
AK129009
ASS3 24 4 AK089235
ASS4 11 2 AK129009
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 23 -55 AK089235
ASS2 14 -46 AK089235
Intron retentions Close
 Identifier   Position   Transcript 
IR1 2 AK089256
IR2 8 AK170644
AK172467
IR3 12 AK089256
IR4 13 AK089256
IR5 15 AK054410
AK089256
AK170421
AK170644
IR6 17 AK157941
IR7 19 AK157941
IR8 20 AK157941
IR9 23 AK129009
BC022160
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 107877891 AK054410
P2 1 4 107877894 AK089235
P3 1 7 107877897 AK004894
P4 1 10 107877900 AK170644
P5 1 14 107877904 AK170421
P6 1 21 107877911 AK089256
P7 1 45 107877935 AK172467
P8 17 4180 107882070 AK157941
P9 22 7466 107885356 BC094906
Protein prediction Close
 Transcript name   Sequence 
AK054410 sequence
AK089235 sequence
AK004894 sequence
NM_023738 sequence
AK170644 sequence
AK170421 sequence
AK089256 sequence
AK172467 sequence
BC138843 sequence
AK129009 sequence
BC037693 sequence
AF288694 sequence
AK157941 sequence
BC022160 sequence
BC094906 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 18 4936 107882826 no AK089256 Full_length
PA2 21 7226 107885116 no AK157941 Full_length
PA3 24 8499 107886389 AATAAA no AK129009 Cdna
PA4 24 8499 107886389 AATAAA yes BC037693 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 5 AK089256
ES2 6 AK089256
ES3 7 AK089256
ES4 8 AK089256
ES5 9 AK089256
ES6 15 AK089235
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 8.56 no GCTgtaagt
S2 5' (donor) 2 10.77 no CAGgtaaga
S3 3' (acceptor) 2 9.73 no ctccttcttcttaaccacagGTA
S4 5' (donor) 3 4.83 no CAGgtgctt
S5 3' (acceptor) 3 1.47 no ctgcactgagctgtccttagTGT
S6 5' (donor) 4 5.5 no GGGgtgagg
S7 3' (acceptor) 4 7.44 no caatcacggtgtccatctagGTA
S8 5' (donor) 5 8.56 no CAGgtgggt
S9 3' (acceptor) 5 5.54 no cccctttgggcctgtcctagTGC
S10 3' (acceptor) 5 5.55 yes acttccgccacccacactagGCG
S11 5' (donor) 6 6.31 no AGAgtaagc
S12 3' (acceptor) 6 5.71 no acaagccatctctcactcagGGT
S13 5' (donor) 7 5.1 no CATgtgcgt
S14 3' (acceptor) 7 3.16 no ttaggatggctctctcacagAAG
S15 5' (donor) 8 7.21 no CCTgtgagt
S16 3' (acceptor) 8 3.64 no gcaaccccgaccccctacagAAG
S17 5' (donor) 9 10.08 no AAGgtaggc
S18 3' (acceptor) 9 6.1 no gcctgagtgccatcccacagGAT
S19 5' (donor) 10 3.73 no CCAgtgaga
S20 3' (acceptor) 10 8.37 no actgatgtacccacccctagGCC
S21 5' (donor) 11 7.43 no TTGgtgagc
S22 3' (acceptor) 11 8.66 no ccattatctgtgttccctagAGA
S23 5' (donor) 12 7.36 no AGAgtgagt
S24 3' (acceptor) 12 8.51 no aagactgtttctgtcaccagGTG
S25 5' (donor) 13 8.4 no CCCgtgagt
S26 3' (acceptor) 13 10.81 no accctgtcctctcttcccagAGG
S27 5' (donor) 14 10.86 no CAGgtaagt
S28 3' (acceptor) 14 7.4 no accctctgcccctttgccagGGC
S29 5' (donor) 14 -15.29 yes TGTgtgtac
S30 5' (donor) 15 5.42 no ACAgtaagg
S31 3' (acceptor) 15 8.07 no atcctccccccaccccacagTGG
S32 5' (donor) 16 6.84 no AAAgtaggt
S33 3' (acceptor) 16 13.1 no atgtcctccttcctttgcagGAC
S34 5' (donor) 17 9.3 no CACgtgagt
S35 3' (acceptor) 17 10.54 no aacggcctttatttccatagGTG
S36 5' (donor) 18 7.61 no ATGgtgagg
S37 3' (acceptor) 18 8.66 no tgctctctgcctggctgtagGAC
S38 5' (donor) 19 5.87 no AAGgtgggg
S39 3' (acceptor) 19 9.63 no cgtgccctgctccctgacagGCC
S40 5' (donor) 20 5.86 no CGGgtaact
S41 3' (acceptor) 20 5.6 no ctgtgatctgggcctggcagGAT
S42 5' (donor) 21 9.1 no TCGgtgagc
S43 3' (acceptor) 21 8.67 no aaatgccctgtccttgacagATC
S44 3' (acceptor) 21 6.27 yes catggtacctttcgtcacagCTA
S45 5' (donor) 22 9.37 no CAGgtatgc
S46 3' (acceptor) 22 8.39 no ctctcctctccatcctgtagTTC
S47 5' (donor) 23 9.6 no CAGgtgagc
S48 3' (acceptor) 23 7.73 no atctgatgtataccttctagGAA
S49 5' (donor) 23 -29.57 yes CTCtgctct
S50 3' (acceptor) 24 7.07 no taaaccccctcccataccagGGT
S51 3' (acceptor) 24 -21.05 yes ccccctcccataccagggtgACA
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
13185 2 2
13185 3 3
13185 4 4
13185 5 5
13185 7 7
13185 8 8
13185 9 9
13185 10 10
13185 11 11
13185 12 12
13185 13 13
13185 14 14
13185 15 15
13185 16 16
13185 17 17
13185 18 18
13185 19 19
13185 20 20
13185 21 21
13185 22 22
13185 23 23
13185 24 24
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 7
17 1
22 1
 Transcription termination & last exon(s) 
18 1
21 1
24 2
 Exon skipping 
5 1
6 1
7 1
8 1
9 1
15 1
 Alternative 3' splice sites 
5 1
11 1
21 1
24 1
 Alternative 5' splice sites 
14 1
23 1
 Intron retentions 
2 1
8 2
12 1
13 1
15 4
17 1
19 1
20 1
23 2
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
3 Expression Expression
4 Expression Expression
5 Expression Expression
6 Expression Expression
7 Expression Expression
8 Expression Expression
9 Expression Expression
10 Expression Expression
11 Expression Expression
12 Expression Expression
13 Expression Expression
14 Expression Expression
15 Expression Expression
16 Expression Expression
17 Expression Expression
18 Expression Expression
19 Expression Expression
20 Expression Expression
21 Expression Expression
22 Expression Expression
23 Expression Expression
24 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 154 107877891 - 107878044 154 sequence download
1 Intron 155 - 237 107878045 - 107878127 83 sequence -
2 Exon 238 - 406 107878128 - 107878296 169 sequence download
2 Intron 407 - 495 107878297 - 107878385 89 sequence -
3 Exon 496 - 630 107878386 - 107878520 135 sequence download
3 Intron 631 - 746 107878521 - 107878636 116 sequence -
4 Exon 747 - 853 107878637 - 107878743 107 sequence download
4 Intron 854 - 1095 107878744 - 107878985 242 sequence -
5 Exon 1096 - 1241 107878986 - 107879131 146 sequence download
5 Intron 1242 - 1344 107879132 - 107879234 103 sequence -
6 Exon 1345 - 1480 107879235 - 107879370 136 sequence download
6 Intron 1481 - 1571 107879371 - 107879461 91 sequence -
7 Exon 1572 - 1669 107879462 - 107879559 98 sequence download
7 Intron 1670 - 1769 107879560 - 107879659 100 sequence -
8 Exon 1770 - 1916 107879660 - 107879806 147 sequence download
8 Intron 1917 - 2292 107879807 - 107880182 376 sequence -
9 Exon 2293 - 2463 107880183 - 107880353 171 sequence download
9 Intron 2464 - 2649 107880354 - 107880539 186 sequence -
10 Exon 2650 - 2757 107880540 - 107880647 108 sequence download
10 Intron 2758 - 2905 107880648 - 107880795 148 sequence -
11 Exon 2906 - 2986 107880796 - 107880876 81 sequence download
11 Intron 2987 - 3066 107880877 - 107880956 80 sequence -
12 Exon 3067 - 3222 107880957 - 107881112 156 sequence download
12 Intron 3223 - 3296 107881113 - 107881186 74 sequence -
13 Exon 3297 - 3462 107881187 - 107881352 166 sequence download
13 Intron 3463 - 3540 107881353 - 107881430 78 sequence -
14 Exon 3541 - 3746 107881431 - 107881636 206 sequence download
14 Intron 3747 - 3834 107881637 - 107881724 88 sequence -
15 Exon 3835 - 3899 107881725 - 107881789 65 sequence download
15 Intron 3900 - 3984 107881790 - 107881874 85 sequence -
16 Exon 3985 - 4132 107881875 - 107882022 148 sequence download
16 Intron 4133 - 4203 107882023 - 107882093 71 sequence -
17 Exon 4204 - 4278 107882094 - 107882168 75 sequence download
17 Intron 4279 - 4469 107882169 - 107882359 191 sequence -
18 Exon 4470 - 4623 107882360 - 107882513 154 sequence download
18 Intron 4624 - 5317 107882514 - 107883207 694 sequence -
19 Exon 5318 - 5400 107883208 - 107883290 83 sequence download
19 Intron 5401 - 5644 107883291 - 107883534 244 sequence -
20 Exon 5645 - 5737 107883535 - 107883627 93 sequence download
20 Intron 5738 - 5830 107883628 - 107883720 93 sequence -
21 Exon 5831 - 6022 107883721 - 107883912 192 sequence download
21 Intron 6023 - 7537 107883913 - 107885427 1515 sequence -
22 Exon 7538 - 7630 107885428 - 107885520 93 sequence download
22 Intron 7631 - 7703 107885521 - 107885593 73 sequence -
23 Exon 7704 - 7804 107885594 - 107885694 101 sequence download
23 Intron 7805 - 8257 107885695 - 107886147 453 sequence -
24 Exon 8258 - 8499 107886148 - 107886389 242 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4   UTR 5   UTR 6   UTR 7   UTR 8   UTR 9   UTR 10 
 Supporting GenBank
accession identifers 		 AK170421
 AK054410
 AK004894
 BC037693
 AK170644
NM_023738
BC138843
 AK172467
 AK089256
 AK129009
 AK157941
 BC094906
 Length  111 125 119 363 1378 1341 651 1183 292 189
 Number of ATGs in frame  0 0 0 2 9 9 4 12 1 0
 Total number of ATGs  0 0 0 4 21 21 10 23 3 2
 Number of GTGs in frame  2 2 2 5 20 20 7 16 3 8
 Total number of GTGs  4 4 4 13 49 48 30 42 9 12
 Number of CTGs in frame  1 1 1 2 12 12 4 9 3 3
 Total number of CTGs  1 1 1 10 30 29 11 24 8 5
 Number of micro ORFs in frame  0 0 0 2 0 0 0 0 0 0
 Total number of micro ORFs  0 0 0 3 2 2 3 1 2 2
 GC percentage  59 58 60 54 54 54 57 55 53 56
 Number of pyrimidine tracks  3 3 3 2 11 11 6 7 2 1
Close 3' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4   UTR 5 
 Supporting GenBank
accession identifers 		 AK089256
 AK170421
AK170644
AK054410
AK172467
AK004894
NM_023738
AF288694
BC094906
BC138843
 AK157941
 AK129009
 BC037693
 Length  1313 1260 1607 691 112
 Number of ATGs in frame  12 4 7 3 0
 Total number of ATGs  23 21 30 7 0
 Number of GTGs in frame  23 8 15 10 0
 Total number of GTGs  44 56 53 24 1
 Number of CTGs in frame  7 4 11 3 0
 Total number of CTGs  26 25 31 7 0
 GC percentage  54 55 54 56 46
 Number of pyrimidine tracks  11 4 7 5 0
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-653 8455 - 8475 107886345 - 107886365 miranda
M2 mmu-miR-653 8468 - 8474 107886358 - 107886364 pita
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Binding EXONT:005710 Zinc finger, MYM-type 9 101483 101599
Binding EXONT:000073 Zinc_finger_binding_site 9,10 101564 112317
Binding EXONT:005710 Zinc finger, MYM-type 9,10 101624 112386
Binding EXONT:000073 Zinc_finger_binding_site 10,11 112351 112594
Binding EXONT:000073 Zinc_finger_binding_site 11 112613 112720
Binding EXONT:005710 Zinc finger, MYM-type 11 112658 112786
Binding EXONT:000073 Zinc_finger_binding_site 11,12 112751 116538
Binding EXONT:000073 Zinc_finger_binding_site 12,13 116566 117163
Binding EXONT:001885 Protein binding 13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32 117128 150708
Binding EXONT:000073 Zinc_finger_binding_site 13,14 117185 118093
Binding EXONT:005710 Zinc finger, MYM-type 14,15 118247 118532
Binding EXONT:000073 Zinc_finger_binding_site 15 118497 118601
Binding EXONT:005710 Zinc finger, MYM-type 15,16 118539 119960
Binding EXONT:000073 Zinc_finger_binding_site 15,16 118620 120044
Binding EXONT:000073 Zinc_finger_binding_site 16,17 120063 121032
Localization EXONT:000064 Nuclear_localization_signal 4 90276 90332
Localization EXONT:000064 Nuclear_localization_signal 25,26 130569 136074
Localization EXONT:000067 Nuclear_export_signal 28 139065 139112
Localization EXONT:000069 ER_retention_signal 30 146661 146675
Localization EXONT:000064 Nuclear_localization_signal 31 149491 149508
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 4 89970 90083
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 4 90120 90185
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 4 90189 90251
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 4 90348 90446
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 6,7 92239 92676
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 7,8 92740 101095
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 9 101414 101431
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 20 124644 124676
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 20,21 124749 127605
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 22 128456 128488
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 22,23 128513 129487
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 24 129903 129965
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 24 129969 129986
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 24,25,26 130011 136080
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 26,27 136213 136498
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 30,31 146739 149544
PTM EXONT:000167 N-acetyl-L-alanine 1 84 86
PTM EXONT:000161 O-phospho-L-serine 1 102 104
PTM EXONT:000161 O-phospho-L-serine 4 90183 90185
PTM EXONT:000162 O-phospho-L-threonine 4 90192 90194
PTM EXONT:000161 O-phospho-L-serine 4 90201 90203
PTM EXONT:000162 O-phospho-L-threonine 4 90225 90227
PTM EXONT:000161 O-phospho-L-serine 4 90237 90239
PTM EXONT:000797 Ubiquitinylated lysine 4 90291 90293
PTM EXONT:000161 O-phospho-L-serine 4 90357 90359
PTM EXONT:000162 O-phospho-L-threonine 6 92269 92271
PTM EXONT:000162 O-phospho-L-threonine 6 92278 92280
PTM EXONT:001169 Sumoylated lysine 7 92731 92733
PTM EXONT:000164 O4'-phospho-L-tyrosine 7 92755 92757
PTM EXONT:001169 Sumoylated lysine 7 92800 92802
PTM EXONT:000797 Ubiquitinylated lysine 8 101087 101089
PTM EXONT:000797 Ubiquitinylated lysine 9 101528 101530
PTM EXONT:000238 Dimethylated L-arginine 13 117185 117187
PTM EXONT:000164 O4'-phospho-L-tyrosine 16 120111 120113
PTM EXONT:000161 O-phospho-L-serine 17 121027 121029
PTM EXONT:000161 O-phospho-L-serine 22 128468 128470
PTM EXONT:000161 O-phospho-L-serine 22 128570 128572
PTM EXONT:000161 O-phospho-L-serine 23 129449 129451
PTM EXONT:000162 O-phospho-L-threonine 23 129455 129457
PTM EXONT:000161 O-phospho-L-serine 23 129458 129460
PTM EXONT:000161 O-phospho-L-serine 24 129906 129908
PTM EXONT:000164 O4'-phospho-L-tyrosine 24 129912 129914
PTM EXONT:000161 O-phospho-L-serine 24 129915 129917
PTM EXONT:000161 O-phospho-L-serine 24 129930 129932
PTM EXONT:000161 O-phospho-L-serine 24 129942 129944
PTM EXONT:000162 O-phospho-L-threonine 24 129945 129947
PTM EXONT:000161 O-phospho-L-serine 24 129954 129956
PTM EXONT:000797 Ubiquitinylated lysine 24 130023 130025
PTM EXONT:000161 O-phospho-L-serine 26 136069 136071
PTM EXONT:000161 O-phospho-L-serine 27 136421 136429
PTM EXONT:000161 O-phospho-L-serine 27 136436 136438
PTM EXONT:000161 O-phospho-L-serine 27 136451 136453
PTM EXONT:000162 O-phospho-L-threonine 27 136454 136456
PTM EXONT:000161 O-phospho-L-serine 27 136472 136474
PTM EXONT:000161 O-phospho-L-serine 27 136481 136486
PTM EXONT:000162 O-phospho-L-threonine 29 145075 145077
PTM EXONT:000797 Ubiquitinylated lysine 29 145078 145080
PTM EXONT:000164 O4'-phospho-L-tyrosine 30 146559 146561
PTM EXONT:000161 O-phospho-L-serine 30 146562 146564
PTM EXONT:000162 O-phospho-L-threonine 30 146583 146585
PTM EXONT:000164 O4'-phospho-L-tyrosine 30 146703 146705
PTM EXONT:000162 O-phospho-L-threonine 32 150619 150621
PTM EXONT:000161 O-phospho-L-serine 32 150679 150681
PTM EXONT:000161 O-phospho-L-serine 32 150688 150690
PTM EXONT:000161 O-phospho-L-serine 32 150703 150705
Unclassified EXONT:005901 TRASH domain 9 101501 101611
Unclassified EXONT:005901 TRASH domain 9,10 101645 112398
Unclassified EXONT:005901 TRASH domain 10,11 112432 112660
Unclassified EXONT:005901 TRASH domain 11,12 112679 116481
Unclassified EXONT:005901 TRASH domain 12 116497 116613
Unclassified EXONT:005901 TRASH domain 13,14 117122 118045
Unclassified EXONT:005901 TRASH domain 14,15 118259 118544
Unclassified EXONT:005901 TRASH domain 15,16 118560 119972
Unclassified EXONT:005901 TRASH domain 16 119994 120110
Unclassified EXONT:005901 TRASH domain 17 120991 121098
Unclassified EXONT:009337 Protein of unknown function DUF3504 29,30,31,32 145117 150645
Gene Uba7

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 15Exon 16Exon 17Exon 18Exon 19Exon 20Exon 21Exon 22Exon 23Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 15Exon 16Exon 17Exon 18Exon 19Exon 20Exon 21Exon 22Exon 23Exon 24Extended region