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Previous gene FasterDB identifier: 8379 - 4921517D21Rik (ENSMUSG00000066368) RIKEN cDNA 4921517D21 gene Gene Next gene
Gene Close
Symbol 4921517D21Rik
Synonyms ENSMUSG00000066368
Description RIKEN cDNA 4921517D21 gene Gene
EnsEMBL link ENSMUSG00000066368
Chromosome 9 - forward strand
Chromosomal location
(UCSC link)		 107830799 - 107834792 (3994bp)
Sequence sequence
Associated transcripts AK014908 BC115773 NM_026338 AK014926
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 107830799 AK014908
BC115773
P2 1 291 107831089 AK014926
Protein prediction Close
 Transcript name   Sequence 
AK014908 sequence
BC115773 sequence
NM_026338 sequence
AK014926 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 1 3662 107834460 CATAAA no AK014926 Full_length
PA2 1 3994 107834792 no NM_026338 Cdna
PA3 1 3994 107834792 no AK014908 Full_length

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
No data
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
No data
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
No data
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 2
 Transcription termination & last exon(s) 
1 3
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 3994 107830799 - 107834792 3994 sequence download
 5' untranslated regions  Close
No data
Close 3' untranslated regions 
 UTR 1   UTR 2 
 Supporting GenBank
accession identifers 		 AK014908
BC115773
AK014926
 NM_026338
 Length  359 358
 Number of ATGs in frame  2 2
 Total number of ATGs  7 7
 Number of GTGs in frame  7 7
 Total number of GTGs  10 10
 Number of CTGs in frame  2 2
 Total number of CTGs  5 5
 GC percentage  50 50
 Number of pyrimidine tracks  1 1
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-504 3705 - 3727 107834503 - 107834525 miranda
M2 mmu-miR-496 3754 - 3775 107834552 - 107834573 miranda
M3 mmu-miR-675-5p 3865 - 3871 107834663 - 107834669 pita
M4 mmu-miR-342-5p 3867 - 3873 107834665 - 107834671 pita
M5 mmu-miR-453 3877 - 3883 107834675 - 107834681 pita
M6 mmu-miR-424 3894 - 3901 107834692 - 107834699 pictar
M7 mmu-miR-214 3895 - 3902 107834693 - 107834700 pictar
M8 mmu-miR-214 3912 - 3919 107834710 - 107834717 pictar
M9 mmu-miR-92b 3915 - 3938 107834713 - 107834736 miranda
M10 mmu-miR-367 3916 - 3938 107834714 - 107834736 miranda
M11 mmu-miR-92a 3916 - 3938 107834714 - 107834736 miranda
M12 mmu-miR-25 3916 - 3938 107834714 - 107834736 miranda
M13 mmu-miR-32 3916 - 3938 107834714 - 107834736 miranda
M14 mmu-miR-363 3917 - 3938 107834715 - 107834736 miranda
M15 mmu-miR-203 3969 - 3976 107834767 - 107834774 targetscan
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Binding EXONT:002421 Epidermal growth factor-like domain 5,6 3694 4588
Localization EXONT:000019 Signal_peptide 1 343 432
Localization EXONT:000071 Transmembrane_helix 7 4818 4895
Localization EXONT:000069 ER_retention_signal 7 4905 4919
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 1 178 366
Structure EXONT:000071 Transmembrane_helix 7 4818 4895
PTM EXONT:000992 N4-(N-acetylamino)glucosyl-L-asparagine 2 1181 1183
PTM EXONT:000797 Ubiquitinylated lysine 2 1208 1210
PTM EXONT:000992 N4-(N-acetylamino)glucosyl-L-asparagine 3 3308 3310
PTM EXONT:000121 L-cystine (cross-link) 5,6 3706 4552
PTM EXONT:000935 Cysteinylation (disulfide with free L-cysteine) 5,6 3706 4552
PTM EXONT:000992 N4-(N-acetylamino)glucosyl-L-asparagine 5 3709 3711
PTM EXONT:000992 N4-(N-acetylamino)glucosyl-L-asparagine 6 4511 4513
PTM EXONT:000121 L-cystine (cross-link) 6 4556 4585
PTM EXONT:000935 Cysteinylation (disulfide with free L-cysteine) 6 4556 4585
Unclassified EXONT:006501 EGF-like, conserved site 6 4550 4585
Gene 4921517D21Rik

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Exon 1Extended region