Gene | |||
---|---|---|---|
Symbol | EGFR | ||
Synonyms | ERBB, ERBB1 | ||
Description | epidermal growth factor receptor | ||
EnsEMBL link | ENSG00000146648 | ||
Chromosome | 7 - forward strand | ||
Chromosomal location (UCSC link) |
55041918 - 55324297 (282380bp) | ||
Sequence | sequence | ||
Associated transcripts | U95089 BC094761 NM_005228 NM_201283 NM_201282 NM_201284 AF125253 U48722 X00588 BC070081 AK225422 K03193 AB209442 DQ088980 AK290352 AY550966 GU255993 AY698023 AY698024 AK294750 AK127817 X00663 BC118665 BC128419 EF210210 EF210211 AF277897 HM437234 HM437235 |
Alternative 3' splice site (acceptor) | ||||
---|---|---|---|---|
Identifier | Position | Distance (bp) | Transcript | |
ASS1 | 14 | 7 | AK225422 |
|
ASS2 | 28 | 5 | HM437235 |
Alternative 5' splice sites (donor) | ||||
---|---|---|---|---|
Identifier | Position | Distance (bp) | Transcript | |
ASS1 | 11 | -87 | AK225422 |
|
ASS2 | 27 | -4 | BC094761 NM_005228 X00588 BC070081 AK225422 AB209442 DQ088980 AK290352 AY550966 GU255993 AK294750 X00663 |
Transcription start sites | ||||
---|---|---|---|---|
Identifier | Position | Gene coordinates | Chromosomal coordinates | Transcript |
P1 | 1 | 1 | 55041918 | U95089 |
P2 | 2 | 45008 | 55086925 | AK290352 |
P3 | 3 | 135623 | 55177540 | AK294750 |
P4 | 5 | 168297 | 55210214 | AK127817 |
Protein prediction | |
---|---|
Transcript name | Sequence |
U95089 | sequence |
BC094761 | sequence |
NM_005228 | sequence |
NM_201283 | sequence |
NM_201282 | sequence |
NM_201284 | sequence |
AF125253 | sequence |
U48722 | sequence |
X00588 | sequence |
BC070081 | sequence |
AK225422 | sequence |
K03193 | sequence |
AB209442 | sequence |
DQ088980 | sequence |
AK290352 | sequence |
AY550966 | sequence |
GU255993 | sequence |
AY698023 | sequence |
AY698024 | sequence |
AK294750 | sequence |
AK127817 | sequence |
X00663 | sequence |
BC118665 | sequence |
BC128419 | sequence |
EF210210 | sequence |
EF210211 | sequence |
AF277897 | sequence |
HM437234 | sequence |
HM437235 | sequence |
Polyadenylation | |||||||
---|---|---|---|---|---|---|---|
Identifier | Position | Gene coordinates of cleavage site | Chromosomal coordinates of cleavage site | Pattern | PolyA tail | Accession number | Type |
PA1 | 6 | 173286 | 55215203 | no | AK127817 | Full_length | |
PA2 | 12 | 182725 | 55224642 | yes | U95089 | Cdna | |
PA3 | 12 | 182725 | 55224642 | yes | NM_201283 | Cdna | |
PA4 | 12 | 182725 | 55224642 | yes | U48722 | Cdna | |
PA5 | 18 | 194411 | 55236328 | AATAAA | no | NM_201282 | Cdna |
PA6 | 18 | 194411 | 55236328 | AATAAA | no | AF277897 | Cdna |
PA7 | 19 | 196821 | 55238738 | no | NM_201284 | Cdna | |
PA8 | 19 | 196821 | 55238738 | no | AF125253 | Cdna | |
PA9 | 32 | 228851 | 55270768 | AATAAA | yes | BC094761 | Cdna |
PA10 | 33 | 231674 | 55273591 | no | AK294750 | Full_length | |
PA11 | 33 | 233113 | 55275030 | AATAAA | yes | NM_005228 | Cdna |
PA12 | 34 | 282380 | 55324297 | no | K03193 | Cdna |
Exon skipping | ||
---|---|---|
Identifier | Position | Transcript |
ES1 | 3 | U95089 BC094761 NM_005228 NM_201283 NM_201282 NM_201284 AF125253 U48722 X00588 BC070081 AK225422 K03193 AB209442 DQ088980 AK290352 AY550966 GU255993 AY698023 AY698024 |
ES2 | 6 | BC094761 |
ES3 | 12 | AK225422 |
ES4 | 13 | AK225422 |
ES5 | 14 | EF210210 EF210211 |
ES6 | 15 | EF210210 EF210211 |
ES7 | 16 | EF210210 EF210211 |
ES8 | 17 | EF210211 |
ES9 | 18 | BC094761 NM_005228 NM_201284 AF125253 X00588 BC070081 AK225422 K03193 AB209442 DQ088980 AK290352 AY550966 GU255993 AY698023 AK294750 X00663 BC118665 BC128419 EF210210 EF210211 |
ES10 | 19 | BC094761 NM_005228 X00588 BC070081 AK225422 K03193 AB209442 DQ088980 AK290352 AY550966 GU255993 AY698023 AK294750 X00663 BC118665 BC128419 EF210210 EF210211 |
ES11 | 21 | BC094761 NM_005228 X00588 BC070081 AK225422 AB209442 DQ088980 AK290352 AY550966 GU255993 AK294750 X00663 BC118665 BC128419 |
ES12 | 22 | K03193 |
ES13 | 23 | K03193 |
ES14 | 24 | K03193 |
ES15 | 25 | K03193 |
ES16 | 26 | K03193 |
ES17 | 27 | K03193 |
ES18 | 28 | K03193 |
ES19 | 29 | K03193 |
ES20 | 30 | K03193 |
ES21 | 31 | K03193 |
ES22 | 32 | K03193 |
ES23 | 33 | K03193 |
Report | |
---|---|
Exon | Number of supporting transcripts |
Transcription initiation & first exon(s) | |
1 | 1 |
2 | 1 |
3 | 1 |
5 | 1 |
Transcription termination & last exon(s) | |
6 | 1 |
12 | 3 |
18 | 2 |
19 | 2 |
32 | 1 |
33 | 2 |
34 | 1 |
Exon skipping | |
3 | 19 |
6 | 1 |
12 | 1 |
13 | 1 |
14 | 2 |
15 | 2 |
16 | 2 |
17 | 1 |
18 | 20 |
19 | 18 |
21 | 14 |
22 | 1 |
23 | 1 |
24 | 1 |
25 | 1 |
26 | 1 |
27 | 1 |
28 | 1 |
29 | 1 |
30 | 1 |
31 | 1 |
32 | 1 |
33 | 1 |
Alternative 3' splice sites | |
14 | 1 |
28 | 1 |
Alternative 5' splice sites | |
11 | 1 |
27 | 1 |
Exon-Intron | ||||||
---|---|---|---|---|---|---|
Position | Type | Gene coordinates | Chromosomal coordinates | Length | Sequence | Features |
1 | Exon | 1 - 91 | 55041918 - 55042008 | 91 | sequence | download |
1 | Intron | 92 - 44647 | 55042009 - 55086564 | 44556 | sequence | - |
2 | Exon | 44648 - 45141 | 55086565 - 55087058 | 494 | sequence | download |
2 | Intron | 45142 - 135622 | 55087059 - 55177539 | 90481 | sequence | - |
3 | Exon | 135623 - 135734 | 55177540 - 55177651 | 112 | sequence | download |
3 | Intron | 135735 - 168061 | 55177652 - 55209978 | 32327 | sequence | - |
4 | Exon | 168062 - 168213 | 55209979 - 55210130 | 152 | sequence | download |
4 | Intron | 168214 - 169080 | 55210131 - 55210997 | 867 | sequence | - |
5 | Exon | 169081 - 169264 | 55210998 - 55211181 | 184 | sequence | download |
5 | Intron | 169265 - 172381 | 55211182 - 55214298 | 3117 | sequence | - |
6 | Exon | 172382 - 172516 | 55214299 - 55214433 | 135 | sequence | download |
6 | Intron | 172517 - 177069 | 55214434 - 55218986 | 4553 | sequence | - |
7 | Exon | 177070 - 177138 | 55218987 - 55219055 | 69 | sequence | download |
7 | Intron | 177139 - 178321 | 55219056 - 55220238 | 1183 | sequence | - |
8 | Exon | 178322 - 178440 | 55220239 - 55220357 | 119 | sequence | download |
8 | Intron | 178441 - 179786 | 55220358 - 55221703 | 1346 | sequence | - |
9 | Exon | 179787 - 179928 | 55221704 - 55221845 | 142 | sequence | download |
9 | Intron | 179929 - 181605 | 55221846 - 55223522 | 1677 | sequence | - |
10 | Exon | 181606 - 181722 | 55223523 - 55223639 | 117 | sequence | download |
10 | Intron | 181723 - 182308 | 55223640 - 55224225 | 586 | sequence | - |
11 | Exon | 182309 - 182435 | 55224226 - 55224352 | 127 | sequence | download |
11 | Intron | 182436 - 182534 | 55224353 - 55224451 | 99 | sequence | - |
12 | Exon | 182535 - 182608 | 55224452 - 55224525 | 74 | sequence | download |
12 | Intron | 182609 - 183438 | 55224526 - 55225355 | 830 | sequence | - |
13 | Exon | 183439 - 183529 | 55225356 - 55225446 | 91 | sequence | download |
13 | Intron | 183530 - 185914 | 55225447 - 55227831 | 2385 | sequence | - |
14 | Exon | 185915 - 186114 | 55227832 - 55228031 | 200 | sequence | download |
14 | Intron | 186115 - 187274 | 55228032 - 55229191 | 1160 | sequence | - |
15 | Exon | 187275 - 187407 | 55229192 - 55229324 | 133 | sequence | download |
15 | Intron | 187408 - 189508 | 55229325 - 55231425 | 2101 | sequence | - |
16 | Exon | 189509 - 189599 | 55231426 - 55231516 | 91 | sequence | download |
16 | Intron | 189600 - 191055 | 55231517 - 55232972 | 1456 | sequence | - |
17 | Exon | 191056 - 191213 | 55232973 - 55233130 | 158 | sequence | download |
17 | Intron | 191214 - 194298 | 55233131 - 55236215 | 3085 | sequence | - |
18 | Exon | 194299 - 194411 | 55236216 - 55236328 | 113 | sequence | download |
18 | Intron | 194412 - 196082 | 55236329 - 55237999 | 1671 | sequence | - |
19 | Exon | 196083 - 196821 | 55238000 - 55238738 | 739 | sequence | download |
19 | Intron | 196822 - 196950 | 55238739 - 55238867 | 129 | sequence | - |
20 | Exon | 196951 - 196989 | 55238868 - 55238906 | 39 | sequence | download |
20 | Intron | 196990 - 198621 | 55238907 - 55240538 | 1632 | sequence | - |
21 | Exon | 198622 - 198696 | 55240539 - 55240613 | 75 | sequence | download |
21 | Intron | 198697 - 198758 | 55240614 - 55240675 | 62 | sequence | - |
22 | Exon | 198759 - 198900 | 55240676 - 55240817 | 142 | sequence | download |
22 | Intron | 198901 - 199696 | 55240818 - 55241613 | 796 | sequence | - |
23 | Exon | 199697 - 199819 | 55241614 - 55241736 | 123 | sequence | download |
23 | Intron | 199820 - 200497 | 55241737 - 55242414 | 678 | sequence | - |
24 | Exon | 200498 - 200596 | 55242415 - 55242513 | 99 | sequence | download |
24 | Intron | 200597 - 207068 | 55242514 - 55248985 | 6472 | sequence | - |
25 | Exon | 207069 - 207254 | 55248986 - 55249171 | 186 | sequence | download |
25 | Intron | 207255 - 217494 | 55249172 - 55259411 | 10240 | sequence | - |
26 | Exon | 217495 - 217650 | 55259412 - 55259567 | 156 | sequence | download |
26 | Intron | 217651 - 218541 | 55259568 - 55260458 | 891 | sequence | - |
27 | Exon | 218542 - 218621 | 55260459 - 55260538 | 80 | sequence | download |
27 | Intron | 218622 - 224492 | 55260539 - 55266409 | 5871 | sequence | - |
28 | Exon | 224493 - 224639 | 55266410 - 55266556 | 147 | sequence | download |
28 | Intron | 224640 - 226091 | 55266557 - 55268008 | 1452 | sequence | - |
29 | Exon | 226092 - 226189 | 55268009 - 55268106 | 98 | sequence | download |
29 | Intron | 226190 - 226963 | 55268107 - 55268880 | 774 | sequence | - |
30 | Exon | 226964 - 227131 | 55268881 - 55269048 | 168 | sequence | download |
30 | Intron | 227132 - 227510 | 55269049 - 55269427 | 379 | sequence | - |
31 | Exon | 227511 - 227558 | 55269428 - 55269475 | 48 | sequence | download |
31 | Intron | 227559 - 228292 | 55269476 - 55270209 | 734 | sequence | - |
32 | Exon | 228293 - 228401 | 55270210 - 55270318 | 109 | sequence | download |
32 | Intron | 228402 - 231031 | 55270319 - 55272948 | 2630 | sequence | - |
33 | Exon | 231032 - 233113 | 55272949 - 55275030 | 2082 | sequence | download |
33 | Intron | 233114 - 282019 | 55275031 - 55323936 | 48906 | sequence | - |
34 | Exon | 282020 - 282380 | 55323937 - 55324297 | 361 | sequence | download |
miRNAs | ||||
---|---|---|---|---|
Identifier | Name | Gene coordinates | Chromosomal coordinates | Prediction algorithm |
Group 1 | ||||
M1 | hsa-miR-223 | 182369 - 182391 | 55224286 - 55224308 | miranda |
Group 2 | ||||
M1 | hsa-miR-383 | 182545 - 182567 | 55224462 - 55224484 | miranda |
M2 | hsa-miR-145 | 182560 - 182580 | 55224477 - 55224497 | miranda |
Group 3 | ||||
M1 | hsa-miR-204 | 182622 - 182644 | 55224539 - 55224561 | miranda |
M2 | hsa-miR-141 | 182630 - 182654 | 55224547 - 55224571 | miranda |
M3 | hsa-miR-200a | 182633 - 182654 | 55224550 - 55224571 | miranda |
Group 4 | ||||
M1 | hsa-miR-133a | 183503 - 183524 | 55225420 - 55225441 | miranda |
M2 | hsa-miR-133b | 183503 - 183524 | 55225420 - 55225441 | miranda |
Group 5 | ||||
M1 | hsa-miR-539 | 194353 - 194374 | 55236270 - 55236291 | miranda |
Group 6 | ||||
M1 | hsa-miR-29c | 196683 - 196706 | 55238600 - 55238623 | miranda |
Group 7 | ||||
M1 | hsa-miR-450a | 228619 - 228641 | 55270536 - 55270558 | miranda |
M2 | hsa-miR-342-3p | 228669 - 228691 | 55270586 - 55270608 | miranda |
M3 | hsa-miR-195 | 228755 - 228777 | 55270672 - 55270694 | miranda |
M4 | hsa-miR-374a | 228811 - 228833 | 55270728 - 55270750 | miranda |
Group 8 | ||||
M1 | hsa-miR-133b | 231443 - 231450 | 55273360 - 55273367 | targetscan |
M2 | hsa-miR-133a | 231443 - 231450 | 55273360 - 55273367 | targetscan |
M3 | hsa-miR-27b | 231580 - 231600 | 55273497 - 55273517 | miranda |
M4 | hsa-miR-27a | 231580 - 231600 | 55273497 - 55273517 | miranda |
M5 | hsa-miR-27a | 231593 - 231600 | 55273510 - 55273517 | pictar |
M6 | hsa-miR-128b | 231593 - 231600 | 55273510 - 55273517 | pictar |
M7 | hsa-miR-128a | 231593 - 231600 | 55273510 - 55273517 | pictar |
M8 | hsa-miR-27b | 231593 - 231600 | 55273510 - 55273517 | pictar |
M9 | hsa-miR-767-3p | 231640 - 231646 | 55273557 - 55273563 | pita |
M10 | hsa-miR-875-5p | 231651 - 231670 | 55273568 - 55273587 | miranda |
M11 | hsa-miR-875-5p | 231663 - 231671 | 55273580 - 55273588 | targetscan |
Group 9 | ||||
M1 | hsa-miR-128a | 231823 - 231830 | 55273740 - 55273747 | pictar |
M2 | hsa-miR-27b | 231823 - 231830 | 55273740 - 55273747 | pictar |
M3 | hsa-miR-128b | 231823 - 231830 | 55273740 - 55273747 | pictar |
M4 | hsa-miR-27a | 231824 - 231831 | 55273741 - 55273748 | pictar |
M5 | hsa-miR-7 | 231850 - 231858 | 55273767 - 55273775 | targetscan |
M6 | hsa-miR-7 | 232118 - 232140 | 55274035 - 55274057 | miranda |
M7 | hsa-miR-27b | 232406 - 232413 | 55274323 - 55274330 | pictar |
M8 | hsa-miR-27a | 232406 - 232413 | 55274323 - 55274330 | pictar |
M9 | hsa-miR-520e | 232591 - 232611 | 55274508 - 55274528 | miranda |
M10 | hsa-miR-520d-3p | 232591 - 232611 | 55274508 - 55274528 | miranda |
M11 | hsa-miR-302e | 232595 - 232611 | 55274512 - 55274528 | miranda |
M12 | hsa-miR-539 | 232758 - 232779 | 55274675 - 55274696 | miranda |
M13 | hsa-miR-141 | 232867 - 232888 | 55274784 - 55274805 | miranda |
M14 | hsa-miR-200a | 232867 - 232888 | 55274784 - 55274805 | miranda |
M15 | hsa-miR-134 | 232957 - 232980 | 55274874 - 55274897 | miranda |
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