Download PDF   |   Home   |   Legend
Previous gene FasterDB identifier: 13208 - SEC61G (SSS1) Sec61 gamma subunit Next gene
Gene Close
Symbol SEC61G
Synonyms SSS1
Description Sec61 gamma subunit
EnsEMBL link ENSG00000132432
Chromosome 7 - reverse strand
Chromosomal location
(UCSC link)		 54819940 - 54826939 (7000bp)
Sequence sequence
Associated transcripts NM_014302 NM_001012456 AK311845 AF054184 AF086539 AK308617 BC009480 CR456979
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 1 -4 NM_001012456
AK308617
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 54826939 NM_014302
NM_001012456
P2 1 4 54826936 AK311845
P3 1 49 54826891 AK308617
Protein prediction Close
 Transcript name   Sequence 
NM_014302 sequence
NM_001012456 sequence
AK311845 sequence
AF054184 sequence
AF086539 sequence
AK308617 sequence
BC009480 sequence
CR456979 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 3 3468 54823472 no AK311845 Full_length
PA2 3 4455 54822485 no AK308617 Full_length
PA3 4 7000 54819940 ATTAAA no AF086539 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
No data
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 8.83 no TAGgtgagt
S2 5' (donor) 1 6.86 yes TGGgtaggt
S3 5' (donor) 2 8.83 no AAGgtaatt
S4 3' (acceptor) 2 10.48 no atcttttttgttttaaacagGCA
S5 5' (donor) 3 7.65 no TGTgtaagt
S6 3' (acceptor) 3 8.75 no tttcctgtttttaaatgcagAAT
S7 3' (acceptor) 4 10.01 no aatttttctttcttttacagTGG
Conserved exons Close
 Gene identifier mouse   Position human  Position mouse 
1350 1 1
1350 2 2
1350 3 3
Other orthologous genes
8826 2 1
8826 3 1
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 3
 Transcription termination & last exon(s) 
3 2
4 1
 Alternative 5' splice sites 
1 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR) Yes Yes
 
ESRP1/2 (ESRP) Yes
 
FUS Yes
 
HNRNPA1 Yes
 
HNRNPA2B1 Yes
 
HNRNPAB
 
HNRNPC Yes
 
HNRNPF/HNRNPH1 Yes Yes
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM Yes
 
HNRNPU Yes
 
MBNL
 
NOVA1
 
PTBP1/2 (PTB) Yes Yes
 
QKI
 
RBFOX2 (FOX2) Yes
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 (SF2ASF)
 
SRSF2 (SC35)
 
SRSF5 (SRP40)
 
TDP43
 
TIA1/TIAL1 Yes
 
TRA2A
 
TRA2B
 
YBX1 (YB1)
 
Expression Close
 Exon position   Tissues   Cell lines   Cancer cell lines 
1 Expression Expression Expression
2 Expression Expression Expression
3 Expression Expression Expression
4 Expression Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 89 54826851-54826939 89 sequence download
1 Intron 90 - 1652 54825288-54826850 1563 sequence -
2 Exon 1653 - 1752 54825188-54825287 100 sequence download
2 Intron 1753 - 3365 54823575-54825187 1613 sequence -
3 Exon 3366 - 3468 54823472-54823574 103 sequence download
3 Intron 3469 - 6826 54820114-54823471 3358 sequence -
4 Exon 6827 - 7000 54819940-54820113 174 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 NM_014302
AF054184
AF086539
BC009480
 NM_001012456
 AK308617
 Length  95 91 43
 Number of ATGs in frame  0 0 0
 Total number of ATGs  0 0 0
 Number of GTGs in frame  1 0 0
 Total number of GTGs  1 1 1
 Number of CTGs in frame  2 2 1
 Total number of CTGs  4 4 3
 Number of micro ORFs in frame  0 0 0
 Total number of micro ORFs  0 0 0
 GC percentage  60 60 56
 Number of pyrimidine tracks  0 0 0
Close 3' untranslated regions 
 UTR 1   UTR 2 
 Supporting GenBank
accession identifers 		 AK308617
 AF086539
NM_014302
NM_001012456
AF054184
BC009480
 Length  983 165
 Number of ATGs in frame  7 1
 Total number of ATGs  17 2
 Number of GTGs in frame  5 0
 Total number of GTGs  19 1
 Number of CTGs in frame  5 1
 Total number of CTGs  16 4
 GC percentage  35 28
 Number of pyrimidine tracks  4 2
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 hsa-miR-342-3p 6878 - 6897 54820043 - 54820062 miranda
M2 hsa-miR-488 6934 - 6954 54819986 - 54820006 miranda
M3 hsa-miR-570 6957 - 6963 54819977 - 54819983 pita
M4 hsa-miR-203 6967 - 6988 54819952 - 54819973 miranda
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Localization EXONT:000071 Transmembrane_helix 3 3368 3454
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 2 1659 1679
Structure EXONT:000071 Transmembrane_helix 3 3368 3454
PTM EXONT:000183 N-acetyl-L-methionine 2 1659 1661
Unclassified EXONT:009924 Protein translocase SecE domain 2,3 1671 3466
Gene SEC61G
Gene SEC61G Gene SEC61G
Gene SEC61G Gene SEC61G
Gene SEC61G Gene SEC61G
Gene SEC61G Gene SEC61G
Gene SEC61G Gene SEC61G
Gene SEC61G Gene SEC61G
Gene SEC61G Gene SEC61G
Gene SEC61G Gene SEC61G

Please wait while loading ...

Loading

Exon 1Exon 2Exon 3Exon 1Exon 2Exon 3Exon 4Extended region