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Previous gene FasterDB identifier: 16790 - Dmc1 (Dmc1, Dmc1h, Mei11, sgdp) DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast) Gene Next gene
Gene Close
Symbol Dmc1
Synonyms Dmc1, Dmc1h, Mei11, sgdp
Description DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast) Gene
EnsEMBL link ENSMUSG00000022429
Chromosome 15 - reverse strand
Chromosomal location
(UCSC link)		 79391930 - 79435539 (43610bp)
Sequence sequence
Associated transcripts AK169570 AK076777 D58419 D64107 NM_010059 BC116767 BC119081
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 79435539 AK169570
P2 1 10 79435530 AK076777
Protein prediction Close
 Transcript name   Sequence 
AK169570 sequence
AK076777 sequence
D58419 sequence
D64107 sequence
NM_010059 sequence
BC116767 sequence
BC119081 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 14 43610 79391930 AGTAAA no D64107 Cdna
PA2 14 43610 79391930 AGTAAA no NM_010059 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 6 AK169570
ES2 7 AK169570
ES3 8 AK169570
AK076777
ES4 9 AK169570
AK076777
ES5 11 AK169570
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 7.93 no GGGgtgagt
S2 5' (donor) 2 6.46 no GAGgtatta
S3 3' (acceptor) 2 6.95 no aatatttcttattttcccagAAT
S4 5' (donor) 3 7.35 no ATTgtgagt
S5 3' (acceptor) 3 9.45 no ttccgtttcatttcatttagGAA
S6 5' (donor) 4 5.06 no ATTgtaagc
S7 3' (acceptor) 4 9.96 no cgctcattcttttatttcagAAC
S8 5' (donor) 5 -0.5 no TGAgtgtgt
S9 3' (acceptor) 5 11.77 no tctccattgtctttctttagGAA
S10 5' (donor) 6 9.65 no GAGgtaggt
S11 3' (acceptor) 6 6.74 no tacttcatatctgttttcagTAA
S12 5' (donor) 7 8.24 no GTGgtaaga
S13 3' (acceptor) 7 8.84 no cctttttctaaatttcacagAAT
S14 5' (donor) 8 -1.98 no TTTgtaacc
S15 3' (acceptor) 8 7.65 no aattttttattgttccctagTGA
S16 5' (donor) 9 5.2 no CTAgtaaga
S17 3' (acceptor) 9 2.41 no ttaaccttgacacactccagCCG
S18 5' (donor) 10 5.24 no TTGgtatga
S19 3' (acceptor) 10 12.8 no cattttctctttcccctcagGTG
S20 5' (donor) 11 7.24 no AAGgtagat
S21 3' (acceptor) 11 7.02 no tttatgttactccaatgtagATC
S22 5' (donor) 12 7.1 no GACgtaagc
S23 3' (acceptor) 12 7.35 no aattttattttttgatgcagAAT
S24 5' (donor) 13 7.88 no CAGgtatat
S25 3' (acceptor) 13 4.56 no gaagtgttttattgattcagCTT
S26 3' (acceptor) 14 7.89 no tgttcccttgtattctgtagCCC
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
2289 1 1
2289 2 2
2289 3 3
2289 4 4
2289 5 5
2289 6 6
2289 7 7
2289 8 8
2289 9 10
2289 10 11
2289 11 12
2289 12 13
2289 13 14
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 2
 Transcription termination & last exon(s) 
14 2
 Exon skipping 
6 1
7 1
8 2
9 2
11 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
3 Expression Expression
4 Expression Expression
5 Expression Expression
6 Expression Expression
7 Expression Expression
8 Expression Expression
9 Expression Expression
10 Expression Expression
11 Expression Expression
12 Expression Expression
13 Expression Expression
14 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 148 79435392-79435539 148 sequence download
1 Intron 149 - 2625 79432915-79435391 2477 sequence -
2 Exon 2626 - 2709 79432831-79432914 84 sequence download
2 Intron 2710 - 3548 79431992-79432830 839 sequence -
3 Exon 3549 - 3593 79431947-79431991 45 sequence download
3 Intron 3594 - 4917 79430623-79431946 1324 sequence -
4 Exon 4918 - 5064 79430476-79430622 147 sequence download
4 Intron 5065 - 8783 79426757-79430475 3719 sequence -
5 Exon 8784 - 8866 79426674-79426756 83 sequence download
5 Intron 8867 - 11922 79423618-79426673 3056 sequence -
6 Exon 11923 - 11975 79423565-79423617 53 sequence download
6 Intron 11976 - 13463 79422077-79423564 1488 sequence -
7 Exon 13464 - 13505 79422035-79422076 42 sequence download
7 Intron 13506 - 16286 79419254-79422034 2781 sequence -
8 Exon 16287 - 16359 79419181-79419253 73 sequence download
8 Intron 16360 - 19349 79416191-79419180 2990 sequence -
9 Exon 19350 - 19441 79416099-79416190 92 sequence download
9 Intron 19442 - 19938 79415602-79416098 497 sequence -
10 Exon 19939 - 20012 79415528-79415601 74 sequence download
10 Intron 20013 - 20133 79415407-79415527 121 sequence -
11 Exon 20134 - 20248 79415292-79415406 115 sequence download
11 Intron 20249 - 20730 79414810-79415291 482 sequence -
12 Exon 20731 - 20791 79414749-79414809 61 sequence download
12 Intron 20792 - 36354 79399186-79414748 15563 sequence -
13 Exon 36355 - 36471 79399069-79399185 117 sequence download
13 Intron 36472 - 42527 79393013-79399068 6056 sequence -
14 Exon 42528 - 43610 79391930-79393012 1083 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2 
 Supporting GenBank
accession identifers 		 AK169570
 AK076777
D58419
NM_010059
D64107
BC116767
BC119081
 Length  181 526
 Number of ATGs in frame  0 4
 Total number of ATGs  0 8
 Number of GTGs in frame  3 6
 Total number of GTGs  6 15
 Number of CTGs in frame  1 3
 Total number of CTGs  2 6
 Number of micro ORFs in frame  0 1
 Total number of micro ORFs  0 1
 GC percentage  60 48
 Number of pyrimidine tracks  1 2
Close 3' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 AK169570
AK076777
BC116767
BC119081
D58419
 NM_010059
 D64107
 Length  1262 1013 1012
 Number of ATGs in frame  10 8 5
 Total number of ATGs  33 24 25
 Number of GTGs in frame  8 6 6
 Total number of GTGs  25 17 17
 Number of CTGs in frame  7 8 10
 Total number of CTGs  20 20 20
 GC percentage  40 36 36
 Number of pyrimidine tracks  4 4 4
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-497 42610 - 42631 79392909 - 79392930 miranda
M2 mmu-miR-322 42610 - 42631 79392909 - 79392930 miranda
M3 mmu-miR-15a 42610 - 42631 79392909 - 79392930 miranda
M4 mmu-miR-15b 42610 - 42631 79392909 - 79392930 miranda
M5 mmu-miR-16 42611 - 42631 79392909 - 79392929 miranda
M6 mmu-miR-195 42612 - 42631 79392909 - 79392928 miranda
M7 mmu-miR-322 42623 - 42630 79392910 - 79392917 pita
M8 mmu-miR-16 42624 - 42630 79392910 - 79392916 pita
M9 mmu-miR-195 42624 - 42630 79392910 - 79392916 pita
M10 mmu-miR-15a 42624 - 42630 79392910 - 79392916 pita
M11 mmu-miR-497 42624 - 42630 79392910 - 79392916 pita
M12 mmu-miR-15b 42624 - 42630 79392910 - 79392916 pita
M13 mmu-miR-495 42671 - 42692 79392848 - 79392869 miranda
M14 mmu-miR-1192 42671 - 42692 79392848 - 79392869 miranda
M15 mmu-miR-1192 42684 - 42691 79392849 - 79392856 targetscan
M16 mmu-miR-495 42684 - 42691 79392849 - 79392856 targetscan
M17 mmu-miR-1192 42685 - 42691 79392849 - 79392855 pita
M18 mmu-miR-495 42685 - 42691 79392849 - 79392855 pita
M19 mmu-miR-450a-5p 42706 - 42728 79392812 - 79392834 miranda
M20 mmu-miR-345 42718 - 42725 79392815 - 79392822 pictar
M21 mmu-miR-448 42756 - 42776 79392764 - 79392784 miranda
M22 mmu-miR-448 42799 - 42819 79392721 - 79392741 miranda
M23 mmu-miR-26a 42819 - 42841 79392699 - 79392721 miranda
M24 mmu-miR-26b 42820 - 42841 79392699 - 79392720 miranda
M25 mmu-miR-153 42831 - 42855 79392685 - 79392709 miranda
M26 mmu-miR-448 42835 - 42855 79392685 - 79392705 miranda
M27 mmu-miR-135b 42904 - 42925 79392615 - 79392636 miranda
M28 mmu-miR-135a 42904 - 42925 79392615 - 79392636 miranda
M29 mmu-miR-491 42953 - 42974 79392566 - 79392587 miranda
M30 mmu-miR-20a 43126 - 43146 79392394 - 79392414 miranda
M31 mmu-miR-20b 43126 - 43146 79392394 - 79392414 miranda
M32 mmu-miR-361 43172 - 43193 79392347 - 79392368 miranda
M33 mmu-miR-137 43386 - 43409 79392131 - 79392154 miranda
M34 mmu-miR-377 43456 - 43477 79392063 - 79392084 miranda
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Binding EXONT:008210 Calsequestrin, conserved site 1 360 404
Binding EXONT:008210 Calsequestrin, conserved site 11 10805 10864
Localization EXONT:000019 Signal_peptide 1 258 359
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 1 258 287
Structure EXONT:000024 Compositionally_biased_region_of_peptide 1 300 332
Structure EXONT:000051 Beta_strand 1 402 410
Structure EXONT:000022 Polypeptide_turn_motif 1 417 425
Structure EXONT:000037 Peptide_helix 1 426 446
Structure EXONT:000051 Beta_strand 1 450 473
Structure EXONT:000037 Peptide_helix 1,2 492 2334
Structure EXONT:000051 Beta_strand 2 2338 2358
Structure EXONT:000022 Polypeptide_turn_motif 2 2359 2370
Structure EXONT:000037 Peptide_helix 2 2371 2391
Structure EXONT:000051 Beta_strand 3 3261 3287
Structure EXONT:000051 Beta_strand 3 3294 3305
Structure EXONT:000037 Peptide_helix 3,4 3324 4523
Structure EXONT:000051 Beta_strand 4 4530 4541
Structure EXONT:000037 Peptide_helix 4 4551 4577
Structure EXONT:000051 Beta_strand 4 4593 4607
Structure EXONT:000037 Peptide_helix 4,5 4626 5001
Structure EXONT:000022 Polypeptide_turn_motif 5 5002 5010
Structure EXONT:000051 Beta_strand 5 5017 5028
Structure EXONT:000037 Peptide_helix 5,6 5035 5417
Structure EXONT:000051 Beta_strand 6 5436 5447
Structure EXONT:000051 Beta_strand 6 5478 5489
Structure EXONT:000037 Peptide_helix 6 5496 5525
Structure EXONT:000051 Beta_strand 7 7079 7090
Structure EXONT:000037 Peptide_helix 7 7097 7120
Structure EXONT:000051 Beta_strand 8 8192 8218
Structure EXONT:000037 Peptide_helix 8,9 8234 8499
Structure EXONT:000051 Beta_strand 9 8527 8538
Structure EXONT:000037 Peptide_helix 9 8542 8550
Structure EXONT:000037 Peptide_helix 9,10 8554 9383
Structure EXONT:000051 Beta_strand 10 9405 9422
Structure EXONT:000022 Polypeptide_turn_motif 10,11 9423 10753
Structure EXONT:000024 Compositionally_biased_region_of_peptide 10,11 9429 10879
Structure EXONT:000051 Beta_strand 11 10754 10765
Structure EXONT:000037 Peptide_helix 11 10799 10837
PTM EXONT:000162 O-phospho-L-threonine 1 336 338
PTM EXONT:000164 O4'-phospho-L-tyrosine 1 426 428
PTM EXONT:000164 O4'-phospho-L-tyrosine 1 468 470
PTM EXONT:000164 O4'-phospho-L-tyrosine 4 4605 4607
PTM EXONT:000161 O-phospho-L-serine 4 4614 4616
PTM EXONT:000161 O-phospho-L-serine 4 4623 4625
PTM EXONT:000162 O-phospho-L-threonine 5 5026 5028
PTM EXONT:000161 O-phospho-L-serine 5 5035 5037
PTM EXONT:000992 N4-(N-acetylamino)glucosyl-L-asparagine 10 9420 9422
Unclassified EXONT:002495 Thioredoxin-like fold 1,2,3,4,5,6 366 5533
Unclassified EXONT:002495 Thioredoxin-like fold 7,8,9,10,11 7079 10849
Gene Dmc1

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Extended region