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Previous gene FasterDB identifier: 16592 - Kcnj4 (IRK3, Kcnf2, Kir 2.3, MB-IRK3) potassium inwardly-rectifying channel, subfamily J, member 4 Gene Next gene
Gene Close
Symbol Kcnj4
Synonyms IRK3, Kcnf2, Kir 2.3, MB-IRK3
Description potassium inwardly-rectifying channel, subfamily J, member 4 Gene
EnsEMBL link ENSMUSG00000044216
Chromosome 15 - reverse strand
Chromosomal location
(UCSC link)		 79314146 - 79335676 (21531bp)
Sequence sequence
Associated transcripts NM_008427 BC137594 BC120593 U11075
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 79335676 NM_008427
Protein prediction Close
 Transcript name   Sequence 
NM_008427 sequence
BC137594 sequence
BC120593 sequence
U11075 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 2 21268 79314409 TATAAA yes BX633243 3prime_est
PA2 2 21531 79314146 AATAAA yes NM_008427 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
No data
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 7.79 no GGGgtaagc
S2 3' (acceptor) 2 12.1 no ctgtcccttgtcccccacagGCC
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
2263 2 3
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 1
 Transcription termination & last exon(s) 
2 2
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 51 79335626-79335676 51 sequence download
1 Intron 52 - 19427 79316250-79335625 19376 sequence -
2 Exon 19428 - 21531 79314146-79316249 2104 sequence download
Close  5' untranslated regions 
 UTR 1 
 Supporting GenBank
accession identifers 		 NM_008427
BC137594
BC120593
U11075
 Length  92
 Number of ATGs in frame  0
 Total number of ATGs  0
 Number of GTGs in frame  1
 Total number of GTGs  1
 Number of CTGs in frame  0
 Total number of CTGs  1
 Number of micro ORFs in frame  0
 Total number of micro ORFs  0
 GC percentage  71
 Number of pyrimidine tracks  0
Close 3' untranslated regions 
 UTR 1 
 Supporting GenBank
accession identifers 		 NM_008427
BC120593
BC137594
U11075
 Length  724
 Number of ATGs in frame  3
 Total number of ATGs  10
 Number of GTGs in frame  7
 Total number of GTGs  25
 Number of CTGs in frame  2
 Total number of CTGs  13
 GC percentage  58
 Number of pyrimidine tracks  9
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-298 20815 - 20822 79314855 - 79314862 pictar
M2 mmu-miR-485-5p 20840 - 20847 79314830 - 79314837 pictar
M3 mmu-miR-298 20842 - 20849 79314828 - 79314835 pictar
M4 mmu-miR-298 20994 - 21001 79314676 - 79314683 pictar
M5 mmu-miR-298 21094 - 21101 79314576 - 79314583 pictar
M6 mmu-miR-455 21126 - 21132 79314545 - 79314551 pita
M7 mmu-miR-339 21163 - 21170 79314507 - 79314514 pictar
M8 mmu-miR-707 21206 - 21213 79314464 - 79314471 pita
M9 mmu-miR-335-5p 21208 - 21230 79314447 - 79314469 miranda
Group 2
M1 mmu-miR-298 21279 - 21286 79314391 - 79314398 pictar
M2 mmu-miR-485-5p 21345 - 21352 79314325 - 79314332 pictar
M3 mmu-miR-298 21349 - 21356 79314321 - 79314328 pictar
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Localization EXONT:000071 Transmembrane_helix 2 59696 59758
Localization EXONT:000071 Transmembrane_helix 2,3 59798 61227
Localization EXONT:000071 Transmembrane_helix 4,5 68157 81284
Localization EXONT:000071 Transmembrane_helix 7 85772 85834
Localization EXONT:000071 Transmembrane_helix 7,9 85946 87924
Localization EXONT:000016 Peroxisome targeting signal 8 86560 86568
Localization EXONT:000071 Transmembrane_helix 9,10 88039 93968
Localization EXONT:000071 Transmembrane_helix 12,13 99491 102718
Localization EXONT:000071 Transmembrane_helix 13 102776 102844
Localization EXONT:000071 Transmembrane_helix 13,14 102854 110110
Localization EXONT:000069 ER_retention_signal 14 110162 110176
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 1 231 275
Structure EXONT:000071 Transmembrane_helix 2 59696 59758
Structure EXONT:000071 Transmembrane_helix 2,3 59798 61227
Structure EXONT:000071 Transmembrane_helix 4,5 68157 81284
Structure EXONT:000071 Transmembrane_helix 7 85772 85834
Structure EXONT:000071 Transmembrane_helix 7,9 85946 87924
Structure EXONT:000071 Transmembrane_helix 9,10 88039 93968
Structure EXONT:000071 Transmembrane_helix 12,13 99491 102718
Structure EXONT:000071 Transmembrane_helix 13 102776 102844
Structure EXONT:000071 Transmembrane_helix 13,14 102854 110110
PTM EXONT:000164 O4'-phospho-L-tyrosine 1 264 266
PTM EXONT:000161 O-phospho-L-serine 6 83738 83740
PTM EXONT:000180 N-acetylated L-lysine 7 85907 85909
PTM EXONT:000192 N6-acetyl-L-lysine 7 85907 85909
PTM EXONT:000164 O4'-phospho-L-tyrosine 13 102770 102772
PTM EXONT:000162 O-phospho-L-threonine 13 102782 102784
PTM EXONT:000162 O-phospho-L-threonine 14 110144 110146
PTM EXONT:000161 O-phospho-L-serine 14 110153 110155
Gene Kcnj4

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Exon 1Exon 1Exon 2Extended region