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Previous gene FasterDB identifier: 16420 - Csnk1e (CK1epsilon, CKI epsilon, CKIepsilon, KC1epsilon, tau) casein kinase 1, epsilon Gene Next gene
Gene Close
Symbol Csnk1e
Synonyms CK1epsilon, CKI epsilon, CKIepsilon, KC1epsilon, tau
Description casein kinase 1, epsilon Gene
EnsEMBL link ENSMUSG00000022433
Chromosome 15 - reverse strand
Chromosomal location
(UCSC link)		 79248282 - 79272487 (24206bp)
Sequence sequence
Associated transcripts NM_013767 BC026127 AB028736 AB028241 AK158709 AK201751 AK035978
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 3 4 BC026127
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 79272487 NM_013767
P2 2 239 79272249 AK158709
P3 8 17096 79255392 AK035978
Protein prediction Close
 Transcript name   Sequence 
NM_013767 sequence
BC026127 sequence
AB028736 sequence
AB028241 sequence
AK158709 sequence
AK201751 sequence
AK035978 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 10 18414 79254074 ATTAAA yes BF320383 3prime_est
PA2 10 18414 79254074 ATTAAA no CJ308483 3prime_est
PA3 10 19577 79252911 AATAAA no AK158709 Full_length
PA4 14 24072 79248416 no AK035978 Full_length
PA5 14 24206 79248282 no NM_013767 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 2 NM_013767
BC026127
AB028736
AB028241
ES2 9 NM_013767
BC026127
AB028736
AB028241
AK035978
ES3 10 NM_013767
BC026127
AB028736
AB028241
AK035978
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 8.02 no GCGgtgagc
S2 5' (donor) 2 8.23 no AAGgtgggt
S3 3' (acceptor) 2 -31.06 no gcagggctgggggcgccgccCGT
S4 5' (donor) 3 10.24 no TGGgtaagt
S5 3' (acceptor) 3 10.21 no tgtttctgcttctcccgcagCAA
S6 3' (acceptor) 3 0.69 yes tctgcttctcccgcagcaagGTT
S7 5' (donor) 4 8.41 no GAGgtgagg
S8 3' (acceptor) 4 8.12 no acctcctctgactcgggcagGTG
S9 5' (donor) 5 10.13 no ATGgtgagt
S10 3' (acceptor) 5 5.59 no agtctctctctcgggcccagTGG
S11 5' (donor) 6 9.27 no TTGgtgagt
S12 3' (acceptor) 6 12.63 no tgtgtccttccctccctcagATC
S13 5' (donor) 7 7.21 no CCTgtgagt
S14 3' (acceptor) 7 7.74 no tgacctcctgacctgtgcagAGC
S15 5' (donor) 8 7.9 no TTCgtgagt
S16 3' (acceptor) 8 4.83 no ctatccttgtgacccaccagCCG
S17 5' (donor) 9 9.68 no CTGgtaagg
S18 3' (acceptor) 9 2.65 no tcacatctcttctggaaaagGGG
S19 5' (donor) 10 -13.69 no CTCgctggt
S20 3' (acceptor) 10 12.96 no gctctctctgtcctttccagGTG
S21 5' (donor) 11 3.85 no CTGgtcagc
S22 3' (acceptor) 11 11.12 no cccctctcatgttcctgtagGGT
S23 5' (donor) 12 10.67 no CAGgtgagt
S24 3' (acceptor) 12 12.12 no ctcccctcccctccttccagGCA
S25 5' (donor) 13 8.83 no TAGgtgagt
S26 3' (acceptor) 13 7.88 no tctctgtccccctcttgaagACA
S27 3' (acceptor) 14 10.33 no tgtcttttcttccctcctagTGT
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
2227 3 15
2227 4 16
2227 5 17
2227 6 18
2227 7 19
2227 8 20
2227 11 22
2227 12 23
2227 13 24
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 1
2 1
8 1
 Transcription termination & last exon(s) 
10 3
14 2
 Exon skipping 
2 4
9 5
10 5
 Alternative 3' splice sites 
3 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
3 Expression Expression
4 Expression Expression
5 Expression Expression
6 Expression Expression
7 Expression Expression
8 Expression Expression
9 Expression Expression
10 Expression Expression
11 Expression Expression
12 Expression Expression
13 Expression Expression
14 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 130 79272358-79272487 130 sequence download
1 Intron 131 - 238 79272250-79272357 108 sequence -
2 Exon 239 - 837 79271651-79272249 599 sequence download
2 Intron 838 - 3198 79269290-79271650 2361 sequence -
3 Exon 3199 - 3286 79269202-79269289 88 sequence download
3 Intron 3287 - 11892 79260596-79269201 8606 sequence -
4 Exon 11893 - 12003 79260485-79260595 111 sequence download
4 Intron 12004 - 12197 79260291-79260484 194 sequence -
5 Exon 12198 - 12346 79260142-79260290 149 sequence download
5 Intron 12347 - 15570 79256918-79260141 3224 sequence -
6 Exon 15571 - 15799 79256689-79256917 229 sequence download
6 Intron 15800 - 16387 79256101-79256688 588 sequence -
7 Exon 16388 - 16558 79255930-79256100 171 sequence download
7 Intron 16559 - 17069 79255419-79255929 511 sequence -
8 Exon 17070 - 17218 79255270-79255418 149 sequence download
8 Intron 17219 - 17802 79254686-79255269 584 sequence -
9 Exon 17803 - 17906 79254582-79254685 104 sequence download
9 Intron 17907 - 18002 79254486-79254581 96 sequence -
10 Exon 18003 - 19577 79252911-79254485 1575 sequence download
10 Intron 19578 - 21047 79251441-79252910 1470 sequence -
11 Exon 21048 - 21240 79251248-79251440 193 sequence download
11 Intron 21241 - 21334 79251154-79251247 94 sequence -
12 Exon 21335 - 21474 79251014-79251153 140 sequence download
12 Intron 21475 - 22089 79250399-79251013 615 sequence -
13 Exon 22090 - 22153 79250335-79250398 64 sequence download
13 Intron 22154 - 22870 79249618-79250334 717 sequence -
14 Exon 22871 - 24206 79248282-79249617 1336 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 AK158709
 NM_013767
AB028736
AB028241
 BC026127
 Length  611 142 90
 Number of ATGs in frame  0 0 0
 Total number of ATGs  2 0 0
 Number of GTGs in frame  4 2 1
 Total number of GTGs  11 3 2
 Number of CTGs in frame  6 0 0
 Total number of CTGs  14 0 0
 Number of micro ORFs in frame  0 0 0
 Total number of micro ORFs  2 0 0
 GC percentage  63 83 82
 Number of pyrimidine tracks  5 0 0
Close 3' untranslated regions 
 UTR 1   UTR 2 
 Supporting GenBank
accession identifers 		 AK158709
 NM_013767
BC026127
AK035978
AB028736
AB028241
 Length  1457 1367
 Number of ATGs in frame  6 7
 Total number of ATGs  17 16
 Number of GTGs in frame  13 13
 Total number of GTGs  41 41
 Number of CTGs in frame  10 10
 Total number of CTGs  30 27
 GC percentage  53 46
 Number of pyrimidine tracks  16 14
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-141 22125 - 22147 79250341 - 79250363 miranda
M2 mmu-miR-200a 22125 - 22147 79250341 - 79250363 miranda
M3 mmu-miR-200a 22140 - 22146 79250342 - 79250348 pita
M4 mmu-miR-141 22140 - 22146 79250342 - 79250348 pita
Group 2
M1 mmu-miR-590-3p 22887 - 22907 79249581 - 79249601 miranda
M2 mmu-miR-375 22950 - 22957 79249531 - 79249538 targetscan
M3 mmu-miR-669b 22978 - 22985 79249503 - 79249510 pita
M4 mmu-miR-182 23021 - 23042 79249446 - 79249467 miranda
M5 mmu-miR-182 23034 - 23041 79249447 - 79249454 pictar
M6 mmu-let-7d 23385 - 23392 79249096 - 79249103 pictar
M7 mmu-miR-30e_star 23507 - 23514 79248974 - 79248981 pictar
M8 mmu-miR-30e_star 23525 - 23532 79248956 - 79248963 pictar
M9 mmu-miR-30e_star 23537 - 23544 79248944 - 79248951 pictar
M10 mmu-miR-30e_star 23819 - 23826 79248662 - 79248669 pictar
M11 mmu-miR-1192 23947 - 23968 79248520 - 79248541 miranda
M12 mmu-miR-495 23947 - 23968 79248520 - 79248541 miranda
M13 mmu-miR-1192 23960 - 23967 79248521 - 79248528 targetscan
M14 mmu-miR-495 23960 - 23967 79248521 - 79248528 pita
M15 mmu-miR-1192 23960 - 23967 79248521 - 79248528 pita
M16 mmu-miR-495 23960 - 23967 79248521 - 79248528 targetscan
M17 mmu-miR-329 23975 - 23982 79248506 - 79248513 targetscan
M18 mmu-miR-362-3p 23975 - 23982 79248506 - 79248513 targetscan
M19 mmu-miR-466i 23975 - 23982 79248506 - 79248513 pita
M20 mmu-miR-466f-3p 23976 - 23983 79248505 - 79248512 pita
M21 mmu-let-7d 23995 - 24002 79248486 - 79248493 pictar
M22 mmu-miR-202 23996 - 24003 79248485 - 79248492 pictar
M23 mmu-miR-223 24055 - 24077 79248411 - 79248433 miranda
M24 mmu-miR-30e_star 24070 - 24077 79248411 - 79248418 pictar
M25 mmu-miR-30a-3p 24070 - 24077 79248411 - 79248418 pictar
Group 3
M1 mmu-miR-9_star 24145 - 24152 79248336 - 79248343 pictar
M2 mmu-miR-320 24145 - 24152 79248336 - 79248343 targetscan
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Binding EXONT:001885 Protein binding 5 13172 13213
Localization EXONT:000071 Transmembrane_helix 5 12908 12967
Localization EXONT:000071 Transmembrane_helix 5 14207 14302
Localization EXONT:000071 Transmembrane_helix 5 14330 14404
Localization EXONT:000071 Transmembrane_helix 5 14417 14494
Localization EXONT:000071 Transmembrane_helix 5 14513 14668
Localization EXONT:000067 Nuclear_export_signal 5 14552 14584
Localization EXONT:000064 Nuclear_localization_signal 6 26940 26951
Localization EXONT:000071 Transmembrane_helix 11 39641 39703
Localization EXONT:000071 Transmembrane_helix 12 40452 40523
Localization EXONT:000071 Transmembrane_helix 13 41439 41510
Localization EXONT:000071 Transmembrane_helix 13,14 41544 42642
Localization EXONT:000071 Transmembrane_helix 14 42667 42735
Localization EXONT:000071 Transmembrane_helix 14 42754 42816
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 5 12851 12868
Structure EXONT:000071 Transmembrane_helix 5 12908 12967
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 5 13034 13459
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 5 13574 13609
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 5 13655 13717
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 5 13724 13843
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 5 13952 14002
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 5 14087 14155
Structure EXONT:000071 Transmembrane_helix 5 14207 14302
Structure EXONT:000071 Transmembrane_helix 5 14330 14404
Structure EXONT:000027 Polypeptide_repeat 5 14330 14452
Structure EXONT:000071 Transmembrane_helix 5 14417 14494
Structure EXONT:000071 Transmembrane_helix 5 14513 14668
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 7 28386 28412
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 7,9,10,11 28461 39625
Structure EXONT:000024 Compositionally_biased_region_of_peptide 11 39497 39589
Structure EXONT:000071 Transmembrane_helix 11 39641 39703
Structure EXONT:000071 Transmembrane_helix 12 40452 40523
Structure EXONT:000071 Transmembrane_helix 13 41439 41510
Structure EXONT:000027 Polypeptide_repeat 13 41463 41558
Structure EXONT:000071 Transmembrane_helix 13,14 41544 42642
Structure EXONT:000071 Transmembrane_helix 14 42667 42735
Structure EXONT:000071 Transmembrane_helix 14 42754 42816
PTM EXONT:000180 N-acetylated L-lysine 5 13208 13210
PTM EXONT:000192 N6-acetyl-L-lysine 5 13208 13210
PTM EXONT:000162 O-phospho-L-threonine 5 13280 13282
PTM EXONT:000162 O-phospho-L-threonine 5 13304 13306
PTM EXONT:000164 O4'-phospho-L-tyrosine 5 13307 13309
PTM EXONT:000161 O-phospho-L-serine 5 13316 13318
PTM EXONT:000161 O-phospho-L-serine 5 13322 13324
PTM EXONT:000164 O4'-phospho-L-tyrosine 5 13346 13348
PTM EXONT:000162 O-phospho-L-threonine 5 13349 13351
PTM EXONT:000162 O-phospho-L-threonine 5 13355 13357
PTM EXONT:000162 O-phospho-L-threonine 5 13415 13417
PTM EXONT:000161 O-phospho-L-serine 5 13421 13423
PTM EXONT:000992 N4-(N-acetylamino)glucosyl-L-asparagine 5 13718 13720
PTM EXONT:000161 O-phospho-L-serine 7 28371 28373
PTM EXONT:000162 O-phospho-L-threonine 7 28380 28382
PTM EXONT:000161 O-phospho-L-serine 7 28392 28394
PTM EXONT:000162 O-phospho-L-threonine 10 34411 34413
PTM EXONT:000162 O-phospho-L-threonine 10 34417 34419
PTM EXONT:000162 O-phospho-L-threonine 11 39224 39226
Unclassified EXONT:004097 Sodium/calcium exchanger membrane region 5 14255 14647
Unclassified EXONT:004097 Sodium/calcium exchanger membrane region 11,12,13,14,16 39710 49070
Gene Csnk1e

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Extended region