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Previous gene FasterDB identifier: 16913 - 4933432B09Rik (ENSMUSG00000042564) RIKEN cDNA 4933432B09 gene Gene Next gene
Gene Close
Symbol 4933432B09Rik
Synonyms ENSMUSG00000042564
Description RIKEN cDNA 4933432B09 gene Gene
EnsEMBL link ENSMUSG00000042564
Chromosome 15 - reverse strand
Chromosomal location
(UCSC link)		 79440006 - 79489387 (49382bp)
Sequence sequence
Associated transcripts AK039547 AK039683 NM_029407 AK046478 AK017017 BC118956
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 10 20 AK039547
AK039683
ASS2 3 16 AK039547
AK039683
AK046478
BC118956
ASS3 2 3 NM_029407
AK017017
BC118956
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 79489387 AK039547
AK039683
P2 1 13 79489375 AK046478
P3 1 162 79489226 AK017017
Protein prediction Close
 Transcript name   Sequence 
AK039547 sequence
AK039683 sequence
NM_029407 sequence
AK046478 sequence
AK017017 sequence
BC118956 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 10 23653 79465735 no AK039547 Full_length
PA2 10 23653 79465735 no AK039683 Full_length
PA3 17 41140 79448248 no AK046478 Full_length
PA4 19 46641 79442747 no AK017017 Full_length
PA5 19 49382 79440006 AATAAA no NM_029407 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 4 AK046478
BC118956
ES2 9 AK039547
AK039683
AK046478
BC118956
ES3 11 AK046478
BC118956
ES4 13 NM_029407
AK017017
BC118956
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 10.77 no CAGgtaaga
S2 5' (donor) 2 -4.55 no CCAgtatcc
S3 3' (acceptor) 2 7.11 no atgccctttgtgtttcccagCAG
S4 5' (donor) 3 10.47 no TTGgtaagt
S5 3' (acceptor) 3 1.41 no tggtcagatttccttagcagCCT
S6 3' (acceptor) 3 5.5 yes gcagcctgtctgtctctcagCAT
S7 5' (donor) 4 0.62 no AAGgcaaaa
S8 3' (acceptor) 4 7.65 no cctcctcctggtttttgaagGCA
S9 5' (donor) 5 9.21 no AGGgtaaga
S10 3' (acceptor) 5 6.72 no aacttttcctctattctcagTCA
S11 5' (donor) 6 10.51 no AAGgtaagg
S12 3' (acceptor) 6 7.78 no catatgcttttgttctttagAAA
S13 5' (donor) 7 10.86 no CAGgtaagt
S14 3' (acceptor) 7 6.19 no gattatcctctcttttcaagTCT
S15 5' (donor) 8 10.47 no AAGgtgagt
S16 3' (acceptor) 8 6.11 no gcatctctctcactcggcagCCA
S17 5' (donor) 9 10.07 no CAGgtgagg
S18 3' (acceptor) 9 6.33 no ctgagctctgcccctcccagAGG
S19 5' (donor) 10 9.04 no AGGgtaagc
S20 3' (acceptor) 10 6.74 no ccattcttggcttctttaagGGA
S21 3' (acceptor) 10 5.94 yes ggatgtatccttgcctacagAGC
S22 5' (donor) 11 10.36 no GTGgtaagt
S23 3' (acceptor) 11 8 no cagctttttctgtcttctagCAA
S24 5' (donor) 12 9.6 no AAGgtgagc
S25 3' (acceptor) 12 10.87 no ctattctttttttttttaagGGT
S26 5' (donor) 13 8.92 no TTGgtaagg
S27 3' (acceptor) 13 8.35 no tttccttgctgtgtacatagGCT
S28 5' (donor) 14 9.44 no ACGgtgagc
S29 3' (acceptor) 14 6.2 no ttgttgtaccacatcaacagATC
S30 5' (donor) 15 -25.74 no ATCatccca
S31 3' (acceptor) 15 8.29 no cccccccccccccgtctcagTCC
S32 5' (donor) 16 7.66 no GAGgtgaga
S33 3' (acceptor) 16 -17.75 no acctttccttgacagcagagTGC
S34 5' (donor) 17 7.81 no AAGgtttgt
S35 3' (acceptor) 17 9.77 no ttgccatttttatctcccagGGA
S36 5' (donor) 18 11.08 no CAGgtaagg
S37 3' (acceptor) 18 11.24 no ccattttgcttcccccacagGAA
S38 3' (acceptor) 19 10.26 no gtcttctcatttctccacagTGA
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
2305 2 2
2305 4 4
2305 6 6
2305 7 7
2305 8 8
2305 9 9
2305 10 10
2305 14 13
2305 15 14
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 3
 Transcription termination & last exon(s) 
10 2
17 1
19 2
 Exon skipping 
4 2
9 4
11 2
13 3
 Alternative 3' splice sites 
2 1
3 1
10 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
3 Expression Expression
4 Expression Expression
5 Expression Expression
6 Expression Expression
7 Expression Expression
8 Expression Expression
9 Expression Expression
10 Expression Expression
11 Expression Expression
12 Expression Expression
13 Expression Expression
14 Expression Expression
15 Expression Expression
16 Expression Expression
17 Expression Expression
18 Expression Expression
19 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 277 79489111-79489387 277 sequence download
1 Intron 278 - 9094 79480294-79489110 8817 sequence -
2 Exon 9095 - 9321 79480067-79480293 227 sequence download
2 Intron 9322 - 10122 79479266-79480066 801 sequence -
3 Exon 10123 - 10221 79479167-79479265 99 sequence download
3 Intron 10222 - 14940 79474448-79479166 4719 sequence -
4 Exon 14941 - 15010 79474378-79474447 70 sequence download
4 Intron 15011 - 15586 79473802-79474377 576 sequence -
5 Exon 15587 - 15666 79473722-79473801 80 sequence download
5 Intron 15667 - 16697 79472691-79473721 1031 sequence -
6 Exon 16698 - 16844 79472544-79472690 147 sequence download
6 Intron 16845 - 18212 79471176-79472543 1368 sequence -
7 Exon 18213 - 18314 79471074-79471175 102 sequence download
7 Intron 18315 - 18849 79470539-79471073 535 sequence -
8 Exon 18850 - 18954 79470434-79470538 105 sequence download
8 Intron 18955 - 21820 79467568-79470433 2866 sequence -
9 Exon 21821 - 21944 79467444-79467567 124 sequence download
9 Intron 21945 - 22171 79467217-79467443 227 sequence -
10 Exon 22172 - 22279 79467109-79467216 108 sequence download
10 Intron 22280 - 24811 79464577-79467108 2532 sequence -
11 Exon 24812 - 24894 79464494-79464576 83 sequence download
11 Intron 24895 - 28838 79460550-79464493 3944 sequence -
12 Exon 28839 - 28932 79460456-79460549 94 sequence download
12 Intron 28933 - 30127 79459261-79460455 1195 sequence -
13 Exon 30128 - 30201 79459187-79459260 74 sequence download
13 Intron 30202 - 32626 79456762-79459186 2425 sequence -
14 Exon 32627 - 32721 79456667-79456761 95 sequence download
14 Intron 32722 - 35345 79454043-79456666 2624 sequence -
15 Exon 35346 - 35498 79453890-79454042 153 sequence download
15 Intron 35499 - 38097 79451291-79453889 2599 sequence -
16 Exon 38098 - 38255 79451133-79451290 158 sequence download
16 Intron 38256 - 41124 79448264-79451132 2869 sequence -
17 Exon 41125 - 41262 79448126-79448263 138 sequence download
17 Intron 41263 - 43469 79445919-79448125 2207 sequence -
18 Exon 43470 - 43598 79445790-79445918 129 sequence download
18 Intron 43599 - 46376 79443012-79445789 2778 sequence -
19 Exon 46377 - 49382 79440006-79443011 3006 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4 
 Supporting GenBank
accession identifers 		 AK039547
AK039683
 AK017017
 AK046478
NM_029407
 BC118956
 Length  380 215 493 946
 Number of ATGs in frame  0 0 2 5
 Total number of ATGs  3 1 7 20
 Number of GTGs in frame  3 2 0 11
 Total number of GTGs  13 8 14 26
 Number of CTGs in frame  2 0 2 4
 Total number of CTGs  5 2 7 14
 Number of micro ORFs in frame  0 0 1 1
 Total number of micro ORFs  1 1 2 3
 GC percentage  57 57 56 50
 Number of pyrimidine tracks  3 1 3 4
Close 3' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 AK046478
 AK039547
AK039683
 NM_029407
AK017017
BC118956
 Length  617 1310 2933
 Number of ATGs in frame  3 6 15
 Total number of ATGs  10 19 48
 Number of GTGs in frame  6 12 24
 Total number of GTGs  18 36 61
 Number of CTGs in frame  1 10 9
 Total number of CTGs  5 23 34
 GC percentage  47 49 43
 Number of pyrimidine tracks  3 5 23
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-494 22693 - 22717 79466671 - 79466695 miranda
M2 mmu-miR-219 22795 - 22815 79466573 - 79466593 miranda
M3 mmu-miR-411 22982 - 23001 79466387 - 79466406 miranda
M4 mmu-miR-351 23611 - 23635 79465753 - 79465777 miranda
M5 mmu-miR-125a-5p 23612 - 23635 79465753 - 79465776 miranda
M6 mmu-miR-125b-5p 23614 - 23635 79465753 - 79465774 miranda
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Catalytic EXONT:007737 Glycine N-acyltransferase, N-terminal 5,5,6,7,8,9 19387 28075
Localization EXONT:000064 Nuclear_localization_signal 9 28013 28024
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 8 27658 27681
PTM EXONT:000161 O-phospho-L-serine 5 19442 19444
PTM EXONT:000180 N-acetylated L-lysine 5 19448 19450
PTM EXONT:000192 N6-acetyl-L-lysine 5 19448 19450
PTM EXONT:000180 N-acetylated L-lysine 5 19466 19468
PTM EXONT:000192 N6-acetyl-L-lysine 5 19466 19468
PTM EXONT:000180 N-acetylated L-lysine 7 27211 27213
PTM EXONT:000192 N6-acetyl-L-lysine 7 27211 27213
PTM EXONT:000164 O4'-phospho-L-tyrosine 9 28205 28207
Unclassified EXONT:002030 Acyl-CoA N-acyltransferase 6,7,8,9 20230 28330
Unclassified EXONT:006831 Glycine N-acyltransferase, C-terminal 9 28076 28342
Gene 4933432B09Rik

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 15Exon 16Exon 17Exon 18Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 15Exon 16Exon 17Exon 18Exon 19Extended region