FasterDB - Main

		Gene
Symbol		Mst1r
Synonyms		CDw136, friend virus susceptibility 2, Fv-2, Fv2, PTK8, Ron, STK
Description		macrophage stimulating 1 receptor (c-met-related tyrosine kinase) Gene
EnsEMBL link		ENSMUSG00000032584
Chromosome		9 - forward strand
Chromosomal location (UCSC link)		107809220 - 107822714 (13495bp)
Sequence		sequence
Associated transcripts		X74736 NM_009074 AK053655 BC141379

		Alternative 3' splice site (acceptor)
Identifier	Position	Distance (bp)	Transcript
ASS1	10	3	X74736 NM_009074 BC141379

		Alternative 5' splice sites (donor)
Identifier	Position	Distance (bp)	Transcript
ASS1	1	-28	X74736 NM_009074 BC141379

	Intron retentions
Identifier	Position	Transcript

	Exon deletions
Identifier	Position	Transcript
No data

	Transcription start sites
Identifier	Position	Gene coordinates	Chromosomal coordinates	Transcript
P1	1	1	107809220	X74736 NM_009074
P2	1	18	107809237	AK053655

Protein prediction
Transcript name	Sequence
X74736	sequence
NM_009074	sequence
AK053655	sequence
BC141379	sequence

	Polyadenylation
Identifier	Position	Gene coordinates of cleavage site	Chromosomal coordinates of cleavage site	Pattern	PolyA tail	Accession number	Type
PA1	19	13495	107822714	AATAAA	no	NM_009074	Cdna

More polyadenylation sites ...

	Exon skipping
Identifier	Position	Transcript
No data

	Splice site strength
Identifier	Site	Exon	Strength	Alternative	Sequence
S1	5' (donor)	1	7.21	no	CCTgtgagt
S2	5' (donor)	1	8.69	yes	CCGgtgagc
S3	5' (donor)	2	7.88	no	CAGgtatat
S4	3' (acceptor)	2	6.1	no	tgcctttgcctttgccccagCCT
S5	5' (donor)	3	10.07	no	CAGgtgagg
S6	3' (acceptor)	3	3.07	no	tcatagctgacctgtcacagGTG
S7	5' (donor)	4	6.62	no	GAGgtacag
S8	3' (acceptor)	4	7.25	no	tacccgtttgtcaccctaagGTC
S9	5' (donor)	5	4.04	no	TAGgtataa
S10	3' (acceptor)	5	11.49	no	ggctcttctctccctttcagTTC
S11	5' (donor)	6	6.13	no	GTGgtgagg
S12	3' (acceptor)	6	11.33	no	tgcccttcctgatcttccagGCC
S13	5' (donor)	7	9.49	no	ACAgtaagt
S14	3' (acceptor)	7	7.5	no	cctcttccacatcctctcagGAG
S15	5' (donor)	8	10.86	no	CAGgtaagt
S16	3' (acceptor)	8	10.7	no	ccaatccctccttcctgcagGGT
S17	5' (donor)	9	7.75	no	AGGgtgagc
S18	3' (acceptor)	9	7.46	no	caccctaccccttctcacagTGG
S19	5' (donor)	10	7.07	no	GAGgtgggt
S20	3' (acceptor)	10	1.97	no	tactttcccatgggtctcagCAG
S21	5' (donor)	11	10.28	no	CAGgtaggt
S22	3' (acceptor)	11	9.21	no	ccttctgtctgtctcggcagTAT
S23	5' (donor)	12	6.95	no	TAGgtgaga
S24	3' (acceptor)	12	9.61	no	aaactgccatctgctttcagGTC
S25	5' (donor)	13	5.28	no	AAGgtgtgg
S26	3' (acceptor)	13	10.58	no	gagctcgcctttccccacagGTG
S27	5' (donor)	14	5.09	no	GTCgtaagc
S28	3' (acceptor)	14	11.16	no	taccctcttgctctttctagGCC
S29	5' (donor)	15	9.25	no	AGGgtgagt
S30	3' (acceptor)	15	6.62	no	tgacctatgctactctgcagGCA
S31	5' (donor)	16	7.83	no	CATgtgagt
S32	3' (acceptor)	16	7.46	no	cagtcaccttgtgcccccagAAC
S33	5' (donor)	17	8.37	no	GTGgtaagg
S34	3' (acceptor)	17	9.29	no	ctgtgattccctctcctcagGCT
S35	5' (donor)	18	7.94	no	ACTgtgagt
S36	3' (acceptor)	18	9.15	no	ccctcacttttctccaacagTGG
S37	3' (acceptor)	19	11.96	no	tgacctccatcttcttacagGTA

	Conserved exons
Gene identifier human	Position mouse	Position human
13648	1	1
13648	2	2
13648	3	3
13648	4	4
13648	5	5
13648	6	6
13648	7	7
13648	8	8
13648	9	9
13648	10	10
13648	11	11
13648	12	12
13648	13	14
13648	14	15
13648	15	16
13648	16	17
13648	17	18
13648	18	19
13648	19	20

Report
Exon	Number of supporting transcripts
Transcription initiation & first exon(s)
1	2
Transcription termination & last exon(s)
19	1
Alternative 3' splice sites
10	1
Alternative 5' splice sites
1	1

Splicing factors
Splicing factor	Exon array	CLIP data	Exon position
CELF1 (CUG-BP)
DAZAP1
ELAVL1 (HuR)
ESRP1/2	Yes
FUS		Yes
HNRNPA1
HNRNPA2B1
HNRNPAB
HNRNPC
HNRNPF-H
HNRNPL	Yes
HNRNPL_2
HNRNPM
HNRNPU
MBNL3KO/MBNL3WT/MBNL3C2C12		Yes
Nova/Nova1		Yes
PTBP1/2	Yes
QKI
RBFOX2
RBM4	Yes
SFRS3 (SRP20)
SFRS6 (SRP55)
SFRS7 (9G8)
SRSF1		Yes
SRSF2		Yes
SRSF5 (SRP40)
TIA1/TIAL1
TRA2A
TRA2B
YBX1

	Expression
Exon position	Tissues	Cell lines
1	Expression	Expression
2	Expression	Expression
3	Expression	Expression
4	Expression	Expression
5	Expression	Expression
6	Expression	Expression
7	Expression	Expression
8	Expression	Expression
9	Expression	Expression
10	Expression	Expression
11	Expression	Expression
12	Expression	Expression
13	Expression	Expression
14	Expression	Expression
15	Expression	Expression
16	Expression	Expression
17	Expression	Expression
18	Expression	Expression
19	Expression	Expression

	Exon-Intron
Position	Type	Gene coordinates	Chromosomal coordinates	Length	Sequence	Features
1	Exon	1 - 1520	107809220 - 107810739	1520	sequence	download
1	Intron	1521 - 4631	107810740 - 107813850	3111	sequence	-
2	Exon	4632 - 4820	107813851 - 107814039	189	sequence	download
2	Intron	4821 - 4905	107814040 - 107814124	85	sequence	-
3	Exon	4906 - 5034	107814125 - 107814253	129	sequence	download
3	Intron	5035 - 5189	107814254 - 107814408	155	sequence	-
4	Exon	5190 - 5360	107814409 - 107814579	171	sequence	download
4	Intron	5361 - 5683	107814580 - 107814902	323	sequence	-
5	Exon	5684 - 5844	107814903 - 107815063	161	sequence	download
5	Intron	5845 - 6187	107815064 - 107815406	343	sequence	-
6	Exon	6188 - 6353	107815407 - 107815572	166	sequence	download
6	Intron	6354 - 6460	107815573 - 107815679	107	sequence	-
7	Exon	6461 - 6597	107815680 - 107815816	137	sequence	download
7	Intron	6598 - 7331	107815817 - 107816550	734	sequence	-
8	Exon	7332 - 7493	107816551 - 107816712	162	sequence	download
8	Intron	7494 - 7587	107816713 - 107816806	94	sequence	-
9	Exon	7588 - 7681	107816807 - 107816900	94	sequence	download
9	Intron	7682 - 7820	107816901 - 107817039	139	sequence	-
10	Exon	7821 - 8039	107817040 - 107817258	219	sequence	download
10	Intron	8040 - 8121	107817259 - 107817340	82	sequence	-
11	Exon	8122 - 8268	107817341 - 107817487	147	sequence	download
11	Intron	8269 - 8348	107817488 - 107817567	80	sequence	-
12	Exon	8349 - 8514	107817568 - 107817733	166	sequence	download
12	Intron	8515 - 8815	107817734 - 107818034	301	sequence	-
13	Exon	8816 - 9043	107818035 - 107818262	228	sequence	download
13	Intron	9044 - 9398	107818263 - 107818617	355	sequence	-
14	Exon	9399 - 9479	107818618 - 107818698	81	sequence	download
14	Intron	9480 - 9663	107818699 - 107818882	184	sequence	-
15	Exon	9664 - 9845	107818883 - 107819064	182	sequence	download
15	Intron	9846 - 9926	107819065 - 107819145	81	sequence	-
16	Exon	9927 - 10036	107819146 - 107819255	110	sequence	download
16	Intron	10037 - 10310	107819256 - 107819529	274	sequence	-
17	Exon	10311 - 10476	107819530 - 107819695	166	sequence	download
17	Intron	10477 - 10875	107819696 - 107820094	399	sequence	-
18	Exon	10876 - 11012	107820095 - 107820231	137	sequence	download
18	Intron	11013 - 12923	107820232 - 107822142	1911	sequence	-
19	Exon	12924 - 13495	107822143 - 107822714	572	sequence	download

	5' untranslated regions
	UTR 1	UTR 2
Supporting GenBank accession identifers	X74736 NM_009074	AK053655 BC141379
Length	256	1554
Number of ATGs in frame	0	8
Total number of ATGs	0	13
Number of GTGs in frame	3	16
Total number of GTGs	10	59
Number of CTGs in frame	3	15
Total number of CTGs	6	40
Number of micro ORFs in frame	0	0
Total number of micro ORFs	0	1
GC percentage	63	58
Number of pyrimidine tracks	0	7

	3' untranslated regions
	UTR 1
Supporting GenBank accession identifers	NM_009074 AK053655 X74736 BC141379
Length	313
Number of ATGs in frame	4
Total number of ATGs	7
Number of GTGs in frame	0
Total number of GTGs	8
Number of CTGs in frame	2
Total number of CTGs	5
GC percentage	45
Number of pyrimidine tracks	2

	miRNAs
Identifier	Name	Gene coordinates	Chromosomal coordinates	Prediction algorithm
Group 1
M1	mmu-miR-149	13339 - 13360	107822558 - 107822579	miranda
M2	mmu-miR-592	13472 - 13495	107822691 - 107822714	miranda

	Protein features
Category	Feature identifier	Feature name	Exons	Start on gene	End on gene
Localization	EXONT:000067	Nuclear_export_signal	2	16746	16793
Structure	EXONT:000074	Intrinsically_unstructured_polypeptide_region	2	16563	16592
PTM	EXONT:000797	Ubiquitinylated lysine	2	16713	16715
PTM	EXONT:000797	Ubiquitinylated lysine	2	16755	16757
PTM	EXONT:000667	N-glycyl-1-(phosphatidyl)ethanolamine	2	16920	16922