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Previous gene FasterDB identifier: 13866 - Vopp1 (ENSMUSG00000037788) vesicular, overexpressed in cancer, prosurvival protein 1 Gene Next gene
Gene Close
Symbol Vopp1
Synonyms ENSMUSG00000037788
Description vesicular, overexpressed in cancer, prosurvival protein 1 Gene
EnsEMBL link ENSMUSG00000037788
Chromosome 6 - reverse strand
Chromosomal location
(UCSC link)		 57677801 - 57775148 (97348bp)
Sequence sequence
Associated transcripts AK165256 AK158041 AK031812 BC024822 NM_146168 AK030975 AK170152 AK170832 BC024884
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 57775148 AK165256
P2 1 17 57775132 AK158041
P3 1 23 57775126 AK031812
P4 1 43 57775106 AK030975
P5 1 79 57775070 AK170152
AK170832
Protein prediction Close
 Transcript name   Sequence 
AK165256 sequence
AK158041 sequence
AK031812 sequence
BC024822 sequence
NM_146168 sequence
AK030975 sequence
AK170152 sequence
AK170832 sequence
BC024884 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 4 66808 57708341 no AK165256 Full_length
PA2 5 72890 57702259 AATAAA yes BC024822 Cdna
PA3 5 72890 57702259 AATAAA yes NM_146168 Cdna
PA4 5 72890 57702259 AATAAA yes BC024884 Cdna
PA5 5 72890 57702259 AATAAA no AK031812 Full_length
PA6 5 72890 57702259 AATAAA no AK030975 Full_length
PA7 5 72890 57702259 AATAAA no AK170152 Full_length
PA8 5 72890 57702259 AATAAA no AK170832 Full_length
PA9 6 97348 57677801 ATTAAA no AK158041 Full_length

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 5 AK158041
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 7.81 no GAGgtaggg
S2 5' (donor) 2 6.69 no TATgtaagt
S3 3' (acceptor) 2 8.51 no gtttttgcttttatttctagTGC
S4 5' (donor) 3 10.47 no TTGgtaagt
S5 3' (acceptor) 3 13.79 no ttgtgctttctctcctgcagATG
S6 5' (donor) 4 8.94 no CAGgtcagt
S7 3' (acceptor) 4 12.55 no catgtctgtgttctttgcagGTT
S8 5' (donor) 5 -7.1 no GTCatatgc
S9 3' (acceptor) 5 8.45 no tttggatatctgtctttcagGAG
S10 3' (acceptor) 6 6.46 no tcttttcacaatactttcagAGT
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
13803 2 6
13803 3 7
13803 4 8
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 5
 Transcription termination & last exon(s) 
4 1
5 7
6 1
 Exon skipping 
5 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
3 Expression Expression
4 Expression Expression
5 Expression Expression
6 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 228 57774921-57775148 228 sequence download
1 Intron 229 - 35119 57740030-57774920 34891 sequence -
2 Exon 35120 - 35178 57739971-57740029 59 sequence download
2 Intron 35179 - 50366 57724783-57739970 15188 sequence -
3 Exon 50367 - 50444 57724705-57724782 78 sequence download
3 Intron 50445 - 62583 57712566-57724704 12139 sequence -
4 Exon 62584 - 62720 57712429-57712565 137 sequence download
4 Intron 62721 - 70478 57704671-57712428 7758 sequence -
5 Exon 70479 - 72890 57702259-57704670 2412 sequence download
5 Intron 72891 - 94924 57680225-57702258 22034 sequence -
6 Exon 94925 - 97348 57677801-57680224 2424 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4   UTR 5   UTR 6 
 Supporting GenBank
accession identifers 		 AK031812
 AK158041
 AK165256
BC024822
NM_146168
 AK030975
 AK170152
AK170832
 BC024884
 Length  150 157 174 132 96 268
 Number of ATGs in frame  0 0 0 0 0 0
 Total number of ATGs  0 0 0 0 0 3
 Number of GTGs in frame  3 1 1 0 0 6
 Total number of GTGs  6 6 6 5 4 15
 Number of CTGs in frame  0 0 0 0 1 1
 Total number of CTGs  1 1 1 1 2 8
 Number of micro ORFs in frame  0 0 0 0 0 0
 Total number of micro ORFs  0 0 0 0 0 2
 GC percentage  74 75 76 74 74 60
 Number of pyrimidine tracks  1 1 1 1 0 1
Close 3' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4 
 Supporting GenBank
accession identifers 		 AK165256
 AK031812
AK030975
 BC024822
NM_146168
AK170152
AK170832
BC024884
 AK158041
 Length  4047 2222 2221 2407
 Number of ATGs in frame  30 18 18 13
 Total number of ATGs  64 40 40 42
 Number of GTGs in frame  42 17 17 18
 Total number of GTGs  116 45 45 48
 Number of CTGs in frame  20 18 18 6
 Total number of CTGs  55 41 41 19
 GC percentage  40 45 45 39
 Number of pyrimidine tracks  32 16 16 22
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-30e 70711 - 70718 57704431 - 57704438 pictar
M2 mmu-miR-30d 70711 - 70718 57704431 - 57704438 pictar
M3 mmu-miR-30c 70711 - 70718 57704431 - 57704438 pictar
M4 mmu-miR-30b 70711 - 70718 57704431 - 57704438 pictar
M5 mmu-miR-30a-5p 70711 - 70718 57704431 - 57704438 pictar
M6 mmu-miR-107 70841 - 70848 57704301 - 57704308 pictar
M7 mmu-miR-103 70841 - 70848 57704301 - 57704308 pictar
M8 mmu-miR-107 70844 - 70851 57704298 - 57704305 pictar
M9 mmu-miR-103 70844 - 70851 57704298 - 57704305 pictar
M10 mmu-miR-218 71172 - 71179 57703970 - 57703977 pictar
M11 mmu-miR-103 72210 - 72217 57702932 - 57702939 pictar
M12 mmu-miR-107 72210 - 72217 57702932 - 57702939 pictar
M13 mmu-miR-218 72297 - 72317 57702832 - 57702852 miranda
M14 mmu-miR-218 72309 - 72317 57702832 - 57702840 targetscan
M15 mmu-miR-218 72310 - 72316 57702833 - 57702839 pita
M16 mmu-miR-218 72310 - 72317 57702832 - 57702839 pictar
M17 mmu-miR-30e 72324 - 72332 57702817 - 57702825 targetscan
M18 mmu-miR-384-5p 72324 - 72332 57702817 - 57702825 targetscan
M19 mmu-miR-30a 72324 - 72332 57702817 - 57702825 targetscan
M20 mmu-miR-30b 72324 - 72332 57702817 - 57702825 targetscan
M21 mmu-miR-30c 72324 - 72332 57702817 - 57702825 targetscan
M22 mmu-miR-30d 72324 - 72332 57702817 - 57702825 targetscan
M23 mmu-miR-30d 72325 - 72331 57702818 - 57702824 pita
M24 mmu-miR-30c 72325 - 72332 57702817 - 57702824 pictar
M25 mmu-miR-30e 72325 - 72331 57702818 - 57702824 pita
M26 mmu-miR-30b 72325 - 72332 57702817 - 57702824 pictar
M27 mmu-miR-384-5p 72325 - 72331 57702818 - 57702824 pita
M28 mmu-miR-30a-5p 72325 - 72332 57702817 - 57702824 pictar
M29 mmu-miR-30a 72325 - 72331 57702818 - 57702824 pita
M30 mmu-miR-30b 72325 - 72331 57702818 - 57702824 pita
M31 mmu-miR-30e 72325 - 72332 57702817 - 57702824 pictar
M32 mmu-miR-30c 72325 - 72331 57702818 - 57702824 pita
M33 mmu-miR-30d 72325 - 72332 57702817 - 57702824 pictar
M34 mmu-miR-218 72423 - 72430 57702719 - 57702726 targetscan
M35 mmu-miR-218 72423 - 72430 57702719 - 57702726 pictar
M36 mmu-miR-30d 72588 - 72595 57702554 - 57702561 pictar
M37 mmu-miR-103 72789 - 72796 57702353 - 57702360 pictar
M38 mmu-miR-381 72840 - 72863 57702286 - 57702309 miranda
M39 mmu-miR-376c 72854 - 72861 57702288 - 57702295 targetscan
M40 mmu-miR-466c-3p 72856 - 72862 57702287 - 57702293 pita
M41 mmu-miR-297b-3p 72856 - 72862 57702287 - 57702293 pita
M42 mmu-miR-466d-3p 72856 - 72862 57702287 - 57702293 pita
M43 mmu-miR-466e-3p 72856 - 72862 57702287 - 57702293 pita
M44 mmu-miR-466a-3p 72856 - 72862 57702287 - 57702293 pita
M45 mmu-miR-467g 72856 - 72862 57702287 - 57702293 pita
M46 mmu-miR-466b-3-3p 72856 - 72862 57702287 - 57702293 pita
M47 mmu-miR-466b-3p 72856 - 72862 57702287 - 57702293 pita
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Binding EXONT:001885 Protein binding 1,2,3,4,5,6,7,8 234 20617
Localization EXONT:000020 Transit_peptide 1 156 275
Localization EXONT:000067 Nuclear_export_signal 7 17951 18034
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 1 177 287
PTM EXONT:001307 N6-succinyl-L-lysine 4 12825 12827
PTM EXONT:000161 O-phospho-L-serine 6 17355 17357
Unclassified EXONT:009875 Orthogonal Bundle domain in ATP12 3,4,5,6,7,8 10928 20581
Gene Vopp1

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Extended region