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Previous gene FasterDB identifier: 13785 - Pigy (Pigy) phosphatidylinositol glycan anchor biosynthesis, class Y Gene Next gene
Gene Close
Symbol Pigy
Synonyms Pigy
Description phosphatidylinositol glycan anchor biosynthesis, class Y Gene
EnsEMBL link ENSMUSG00000043162
Chromosome 6 - reverse strand
Chromosomal location
(UCSC link)		 57634733 - 57642073 (7341bp)
Sequence sequence
Associated transcripts AK003713 AK008978 NM_025574 AK032381 BC029232 AK011515
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 57642073 AK003713
AK008978
P2 1 9 57642065 AK032381
P3 1 64 57642010 AK011515
Protein prediction Close
 Transcript name   Sequence 
AK003713 sequence
AK008978 sequence
NM_025574 sequence
AK032381 sequence
BC029232 sequence
AK011515 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 2 2731 57639343 TATAAA no AK008978 Full_length
PA2 2 3041 57639033 AATAAA no AK011515 Full_length
PA3 2 5317 57636757 AATAAA no BB037530 3prime_est
PA4 2 5504 57636570 ATTAAA no AK032381 Full_length
PA5 2 7341 57634733 AGTAAA no NM_025574 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
No data
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 6.95 no TAGgtgaga
S2 3' (acceptor) 2 11.76 no ttgttctttttctcccttagATA
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
7540 1 1
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 3
 Transcription termination & last exon(s) 
2 5
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 271 57641803-57642073 271 sequence download
1 Intron 272 - 2201 57639873-57641802 1930 sequence -
2 Exon 2202 - 7341 57634733-57639872 5140 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2 
 Supporting GenBank
accession identifers 		 AK003713
NM_025574
 AK032381
 Length  74 66
 Number of ATGs in frame  0 0
 Total number of ATGs  0 0
 Number of GTGs in frame  0 0
 Total number of GTGs  3 3
 Number of CTGs in frame  0 0
 Total number of CTGs  3 2
 Number of micro ORFs in frame  0 0
 Total number of micro ORFs  0 0
 GC percentage  65 64
 Number of pyrimidine tracks  0 0
Close 3' untranslated regions 
 UTR 1 
 Supporting GenBank
accession identifers 		 NM_025574
AK032381
BC029232
AK003713
 Length  4998
 Number of ATGs in frame  36
 Total number of ATGs  102
 Number of GTGs in frame  25
 Total number of GTGs  80
 Number of CTGs in frame  31
 Total number of CTGs  74
 GC percentage  38
 Number of pyrimidine tracks  31
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-709 2432 - 2439 57639635 - 57639642 pita
M2 mmu-miR-132 2449 - 2455 57639619 - 57639625 pita
M3 mmu-miR-212 2449 - 2455 57639619 - 57639625 pita
M4 mmu-miR-383 2483 - 2490 57639584 - 57639591 pita
M5 mmu-miR-138 2523 - 2531 57639543 - 57639551 targetscan
M6 mmu-miR-138 2524 - 2530 57639544 - 57639550 pita
M7 mmu-miR-705 2597 - 2603 57639471 - 57639477 pita
Group 2
M1 mmu-miR-338-3p 4369 - 4393 57637681 - 57637705 miranda
M2 mmu-miR-343 4744 - 4751 57637323 - 57637330 pita
M3 mmu-miR-692 4769 - 4775 57637299 - 57637305 pita
M4 mmu-miR-692 4785 - 4791 57637283 - 57637289 pita
M5 mmu-miR-365 4800 - 4807 57637267 - 57637274 pita
M6 mmu-miR-466l 4813 - 4819 57637255 - 57637261 pita
M7 mmu-miR-598 4827 - 4833 57637241 - 57637247 pita
M8 mmu-miR-453 4891 - 4897 57637177 - 57637183 pita
M9 mmu-miR-542-3p 4913 - 4919 57637155 - 57637161 pita
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Binding EXONT:006096 Myc-type, basic helix-loop-helix (bHLH) domain 1,2,3 127 510
Binding EXONT:003710 Orange 3 532 642
Localization EXONT:000067 Nuclear_export_signal 2 268 315
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 1 82 105
Structure EXONT:000024 Compositionally_biased_region_of_peptide 1,2 121 273
Structure EXONT:000024 Compositionally_biased_region_of_peptide 3 640 702
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 3 649 726
Structure EXONT:000024 Compositionally_biased_region_of_peptide 3 715 735
PTM EXONT:000161 O-phospho-L-serine 1 91 93
PTM EXONT:000162 O-phospho-L-threonine 1 94 96
PTM EXONT:000161 O-phospho-L-serine 1 115 117
PTM EXONT:000161 O-phospho-L-serine 2 394 396
PTM EXONT:000180 N-acetylated L-lysine 2 397 399
PTM EXONT:000192 N6-acetyl-L-lysine 2 397 399
PTM EXONT:000180 N-acetylated L-lysine 3 520 522
PTM EXONT:000192 N6-acetyl-L-lysine 3 520 522
PTM EXONT:000797 Ubiquitinylated lysine 3 676 678
Gene Pigy

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Exon 1Exon 1Exon 2Extended region