FasterDB - Main

Download PDF | Home |

Legend

Human
Mouse

Previous gene

FasterDB identifier: 13793 - Lancl2 (ENSMUSG00000062190) LanC (bacterial lantibiotic synthetase component C)-like 2 Gene

Next gene

		Gene
Symbol		Lancl2
Synonyms		ENSMUSG00000062190
Description		LanC (bacterial lantibiotic synthetase component C)-like 2 Gene
EnsEMBL link		ENSMUSG00000062190
Chromosome		6 - forward strand
Chromosomal location (UCSC link)		57652449 - 57689443 (36995bp)
Sequence		sequence
Associated transcripts		NM_133737 BC016072 AB035967 AK005632

		Alternative 3' splice site (acceptor)
Identifier	Position	Distance (bp)	Transcript

		Alternative 5' splice sites (donor)
Identifier	Position	Distance (bp)	Transcript

	Intron retentions
Identifier	Position	Transcript

	Exon deletions
Identifier	Position	Transcript
ED1	9	BC016072 AK005632

	Transcription start sites
Identifier	Position	Gene coordinates	Chromosomal coordinates	Transcript
P1	1	1	57652449	NM_133737
P2	1	632	57653080	AK005632

Protein prediction
Transcript name	Sequence
NM_133737	sequence
BC016072	sequence
AB035967	sequence
AK005632	sequence

	Polyadenylation
Identifier	Position	Gene coordinates of cleavage site	Chromosomal coordinates of cleavage site	Pattern	PolyA tail	Accession number	Type
PA1	9	36995	57689443		no	NM_133737	Cdna

More polyadenylation sites ...

	Exon skipping
Identifier	Position	Transcript
No data

	Splice site strength
Identifier	Site	Exon	Strength	Alternative	Sequence
S1	5' (donor)	1	10.47	no	AAGgtgagt
S2	5' (donor)	2	6.92	no	CAGgtgggg
S3	3' (acceptor)	2	10.5	no	ttttttcctttgatttttagATT
S4	5' (donor)	3	8.4	no	AAAgtgagt
S5	3' (acceptor)	3	1.61	no	tggggtggggatcattccagGCA
S6	5' (donor)	4	7.44	no	GAGgtattg
S7	3' (acceptor)	4	1.95	no	agatatgtcttgttggtcagACT
S8	5' (donor)	5	9.8	no	CAGgtatgt
S9	3' (acceptor)	5	12.04	no	atgtctccttgtctctgtagGTA
S10	5' (donor)	6	8.02	no	CAGgttagt
S11	3' (acceptor)	6	8.57	no	ccctttttgtgtttttaaagCCA
S12	5' (donor)	7	9.16	no	AAGgtgagg
S13	3' (acceptor)	7	10.55	no	ttcggtttctttctctccagGTT
S14	5' (donor)	8	10.57	no	AAGgtaaga
S15	3' (acceptor)	8	8.9	no	agatgcgtctttccttttagTTT
S16	3' (acceptor)	9	9.32	no	atgcacattttgctttgcagGTA

	Conserved exons
Gene identifier human	Position mouse	Position human
13730	2	3
13730	3	4
13730	4	5
13730	5	6
13730	6	7
13730	7	8
13730	8	9

Report
Exon	Number of supporting transcripts
Transcription initiation & first exon(s)
1	2
Transcription termination & last exon(s)
9	1
Exon deletions
9	2

Splicing factors
Splicing factor	Exon array	CLIP data	Exon position
CELF1 (CUG-BP)
DAZAP1
ELAVL1 (HuR)
ESRP1/2	Yes
FUS		Yes
HNRNPA1
HNRNPA2B1
HNRNPAB
HNRNPC
HNRNPF-H
HNRNPL	Yes
HNRNPL_2
HNRNPM
HNRNPU
MBNL3KO/MBNL3WT/MBNL3C2C12		Yes
Nova/Nova1		Yes
PTBP1/2	Yes
QKI
RBFOX2
RBM4	Yes
SFRS3 (SRP20)
SFRS6 (SRP55)
SFRS7 (9G8)
SRSF1		Yes
SRSF2		Yes
SRSF5 (SRP40)
TIA1/TIAL1
TRA2A
TRA2B
YBX1

	Expression
Exon position	Tissues	Cell lines
1	Expression	Expression
2	Expression	Expression
3	Expression	Expression
4	Expression	Expression
5	Expression	Expression
6	Expression	Expression
7	Expression	Expression
8	Expression	Expression
9	Expression	Expression

	Exon-Intron
Position	Type	Gene coordinates	Chromosomal coordinates	Length	Sequence	Features
1	Exon	1 - 809	57652449 - 57653257	809	sequence	download
1	Intron	810 - 10533	57653258 - 57662981	9724	sequence	-
2	Exon	10534 - 10651	57662982 - 57663099	118	sequence	download
2	Intron	10652 - 20042	57663100 - 57672490	9391	sequence	-
3	Exon	20043 - 20250	57672491 - 57672698	208	sequence	download
3	Intron	20251 - 21034	57672699 - 57673482	784	sequence	-
4	Exon	21035 - 21182	57673483 - 57673630	148	sequence	download
4	Intron	21183 - 22091	57673631 - 57674539	909	sequence	-
5	Exon	22092 - 22238	57674540 - 57674686	147	sequence	download
5	Intron	22239 - 23962	57674687 - 57676410	1724	sequence	-
6	Exon	23963 - 24145	57676411 - 57676593	183	sequence	download
6	Intron	24146 - 29741	57676594 - 57682189	5596	sequence	-
7	Exon	29742 - 29918	57682190 - 57682366	177	sequence	download
7	Intron	29919 - 31562	57682367 - 57684010	1644	sequence	-
8	Exon	31563 - 31635	57684011 - 57684083	73	sequence	download
8	Intron	31636 - 35201	57684084 - 57687649	3566	sequence	-
9	Exon	35202 - 36995	57687650 - 57689443	1794	sequence	download

	5' untranslated regions
	UTR 1	UTR 2
Supporting GenBank accession identifers	NM_133737 BC016072 AB035967	AK005632
Length	605	25
Number of ATGs in frame	3	0
Total number of ATGs	6	0
Number of GTGs in frame	9	0
Total number of GTGs	25	0
Number of CTGs in frame	4	0
Total number of CTGs	12	0
Number of micro ORFs in frame	3	0
Total number of micro ORFs	4	0
GC percentage	58	60
Number of pyrimidine tracks	5	0

	3' untranslated regions
	UTR 1	UTR 2
Supporting GenBank accession identifers	AK005632	NM_133737 AB035967 BC016072
Length	825	1699
Number of ATGs in frame	6	12
Total number of ATGs	15	36
Number of GTGs in frame	9	8
Total number of GTGs	13	25
Number of CTGs in frame	9	15
Total number of CTGs	18	33
GC percentage	42	38
Number of pyrimidine tracks	5	8

	miRNAs
Identifier	Name	Gene coordinates	Chromosomal coordinates	Prediction algorithm
Group 1
M1	mmu-miR-133b	35315 - 35336	57687763 - 57687784	miranda
M2	mmu-miR-133a	35315 - 35336	57687763 - 57687784	miranda
M3	mmu-miR-133a	35329 - 35337	57687777 - 57687785	targetscan
M4	mmu-miR-133b	35329 - 35337	57687777 - 57687785	targetscan
M5	mmu-miR-29b	35544 - 35564	57687992 - 57688012	miranda
M6	mmu-miR-29c	35545 - 35564	57687993 - 57688012	miranda
M7	mmu-miR-29a	35545 - 35564	57687993 - 57688012	miranda
M8	mmu-miR-494	35549 - 35556	57687997 - 57688004	targetscan
M9	mmu-miR-494	35549 - 35555	57687997 - 57688003	pita
M10	mmu-miR-29b	35557 - 35563	57688005 - 57688011	pita
M11	mmu-miR-29c	35557 - 35563	57688005 - 57688011	pita
M12	mmu-miR-29a	35557 - 35563	57688005 - 57688011	pita
M13	mmu-miR-143	35675 - 35695	57688123 - 57688143	miranda
M14	mmu-miR-202-3p	35949 - 35970	57688397 - 57688418	miranda
M15	mmu-miR-544	36007 - 36027	57688455 - 57688475	miranda

	Protein features
Category	Feature identifier	Feature name	Exons	Start on gene	End on gene
No data

Gene Lancl2

Please wait while loading ...