Gene | |||
---|---|---|---|
Symbol | SMURF2 | ||
Synonyms | ENSG00000108854 | ||
Description | SMAD specific E3 ubiquitin protein ligase 2 | ||
EnsEMBL link | ENSG00000108854 | ||
Chromosome | 17 - reverse strand | ||
Chromosomal location (UCSC link) |
62538418 - 62658386 (119969bp) | ||
Sequence | sequence | ||
Associated transcripts | NM_022739 CR936721 AY014180 BC051283 BC093876 BC111945 AF301463 AF310676 BC009527 |
Exon deletions | ||
---|---|---|
Identifier | Position | Transcript |
ED1 | 1 | CR936721 |
Transcription start sites | ||||
---|---|---|---|---|
Identifier | Position | Gene coordinates | Chromosomal coordinates | Transcript |
P1 | 1 | 1 | 62658386 | NM_022739 |
Protein prediction | |
---|---|
Transcript name | Sequence |
NM_022739 | sequence |
CR936721 | sequence |
AY014180 | sequence |
BC051283 | sequence |
BC093876 | sequence |
BC111945 | sequence |
AF301463 | sequence |
AF310676 | sequence |
BC009527 | sequence |
Polyadenylation | |||||||
---|---|---|---|---|---|---|---|
Identifier | Position | Gene coordinates of cleavage site | Chromosomal coordinates of cleavage site | Pattern | PolyA tail | Accession number | Type |
PA1 | 20 | 119969 | 62538418 | yes | CR936721 | Cdna |
Exon skipping | ||
---|---|---|
Identifier | Position | Transcript |
ES1 | 2 | CR936721 AF301463 AF310676 |
ES2 | 4 | NM_022739 AY014180 BC093876 BC111945 AF301463 AF310676 |
ES3 | 7 | BC051283 |
Report | |
---|---|
Exon | Number of supporting transcripts |
Transcription initiation & first exon(s) | |
1 | 1 |
Transcription termination & last exon(s) | |
20 | 1 |
Exon skipping | |
2 | 3 |
4 | 6 |
7 | 1 |
Exon deletions | |
1 | 1 |
Expression | |||
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Exon position | Tissues | Cell lines | Cancer cell lines |
1 | Expression | Expression | Expression |
2 | Expression | Expression | Expression |
3 | Expression | Expression | Expression |
4 | Expression | Expression | Expression |
5 | Expression | Expression | Expression |
6 | Expression | Expression | Expression |
7 | Expression | Expression | Expression |
8 | Expression | Expression | Expression |
9 | Expression | Expression | Expression |
10 | Expression | Expression | Expression |
11 | Expression | Expression | Expression |
12 | Expression | Expression | Expression |
13 | Expression | Expression | Expression |
14 | Expression | Expression | Expression |
15 | Expression | Expression | Expression |
16 | Expression | Expression | Expression |
17 | Expression | Expression | Expression |
18 | Expression | Expression | Expression |
19 | Expression | Expression | Expression |
20 | Expression | Expression | Expression |
Exon-Intron | ||||||
---|---|---|---|---|---|---|
Position | Type | Gene coordinates | Chromosomal coordinates | Length | Sequence | Features |
1 | Exon | 1 - 440 | 62657947-62658386 | 440 | sequence | download |
1 | Intron | 441 - 55628 | 62602759-62657946 | 55188 | sequence | - |
2 | Exon | 55629 - 55667 | 62602720-62602758 | 39 | sequence | download |
2 | Intron | 55668 - 63778 | 62594609-62602719 | 8111 | sequence | - |
3 | Exon | 63779 - 63887 | 62594500-62594608 | 109 | sequence | download |
3 | Intron | 63888 - 68164 | 62590223-62594499 | 4277 | sequence | - |
4 | Exon | 68165 - 68278 | 62590109-62590222 | 114 | sequence | download |
4 | Intron | 68279 - 68695 | 62589692-62590108 | 417 | sequence | - |
5 | Exon | 68696 - 68829 | 62589558-62589691 | 134 | sequence | download |
5 | Intron | 68830 - 71119 | 62587268-62589557 | 2290 | sequence | - |
6 | Exon | 71120 - 71185 | 62587202-62587267 | 66 | sequence | download |
6 | Intron | 71186 - 76098 | 62582289-62587201 | 4913 | sequence | - |
7 | Exon | 76099 - 76183 | 62582204-62582288 | 85 | sequence | download |
7 | Intron | 76184 - 78724 | 62579663-62582203 | 2541 | sequence | - |
8 | Exon | 78725 - 78808 | 62579579-62579662 | 84 | sequence | download |
8 | Intron | 78809 - 81277 | 62577110-62579578 | 2469 | sequence | - |
9 | Exon | 81278 - 81480 | 62576907-62577109 | 203 | sequence | download |
9 | Intron | 81481 - 83692 | 62574695-62576906 | 2212 | sequence | - |
10 | Exon | 83693 - 83777 | 62574610-62574694 | 85 | sequence | download |
10 | Intron | 83778 - 90312 | 62568075-62574609 | 6535 | sequence | - |
11 | Exon | 90313 - 90471 | 62567916-62568074 | 159 | sequence | download |
11 | Intron | 90472 - 99302 | 62559085-62567915 | 8831 | sequence | - |
12 | Exon | 99303 - 99498 | 62558889-62559084 | 196 | sequence | download |
12 | Intron | 99499 - 100665 | 62557722-62558888 | 1167 | sequence | - |
13 | Exon | 100666 - 100769 | 62557618-62557721 | 104 | sequence | download |
13 | Intron | 100770 - 104546 | 62553841-62557617 | 3777 | sequence | - |
14 | Exon | 104547 - 104661 | 62553726-62553840 | 115 | sequence | download |
14 | Intron | 104662 - 106270 | 62552117-62553725 | 1609 | sequence | - |
15 | Exon | 106271 - 106449 | 62551938-62552116 | 179 | sequence | download |
15 | Intron | 106450 - 107275 | 62551112-62551937 | 826 | sequence | - |
16 | Exon | 107276 - 107413 | 62550974-62551111 | 138 | sequence | download |
16 | Intron | 107414 - 110564 | 62547823-62550973 | 3151 | sequence | - |
17 | Exon | 110565 - 110685 | 62547702-62547822 | 121 | sequence | download |
17 | Intron | 110686 - 114467 | 62543920-62547701 | 3782 | sequence | - |
18 | Exon | 114468 - 114669 | 62543718-62543919 | 202 | sequence | download |
18 | Intron | 114670 - 115930 | 62542457-62543717 | 1261 | sequence | - |
19 | Exon | 115931 - 116006 | 62542381-62542456 | 76 | sequence | download |
19 | Intron | 116007 - 116321 | 62542066-62542380 | 315 | sequence | - |
20 | Exon | 116322 - 119969 | 62538418-62542065 | 3648 | sequence | download |
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