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Previous gene FasterDB identifier: 19190 - Polg2 (ENSMUSG00000020718) polymerase (DNA directed), gamma 2, accessory subunit Gene Next gene
Gene Close
Symbol Polg2
Synonyms ENSMUSG00000020718
Description polymerase (DNA directed), gamma 2, accessory subunit Gene
EnsEMBL link ENSMUSG00000020718
Chromosome 11 - reverse strand
Chromosomal location
(UCSC link)		 106629518 - 106640855 (11338bp)
Sequence sequence
Associated transcripts AK169977 NM_015810 AK164730 AK041591 AK042777 BC144810 BC119131 AF177202
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 1 -367 AK164730
AK042777
BC144810
ASS2 1 -242 NM_015810
AK041591
BC119131
AF177202
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 106640855 AK169977
P2 1 22 106640834 AK164730
P3 1 33 106640823 AK041591
P4 1 69 106640787 AK042777
Protein prediction Close
 Transcript name   Sequence 
AK169977 sequence
NM_015810 sequence
AK164730 sequence
AK041591 sequence
AK042777 sequence
BC144810 sequence
BC119131 sequence
AF177202 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 7 8498 106632358 AATAAA no AK164730 Full_length
PA2 8 10809 106630047 no AK042777 Full_length
PA3 9 11338 106629518 TATAAA yes NM_015810 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 8 AK169977
NM_015810
AK041591
BC144810
BC119131
AF177202
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 8.24 no GAGgtagga
S2 5' (donor) 1 8.47 yes ACGgtatgg
S3 5' (donor) 1 8.02 yes CAGgttagt
S4 5' (donor) 2 6.82 no AAGgtacaa
S5 3' (acceptor) 2 9.11 no atcggtttgtttcttggcagGTG
S6 5' (donor) 3 7.46 no AAGgtactc
S7 3' (acceptor) 3 2.18 no ttgtttgtttttaaataaagAGT
S8 5' (donor) 4 9.8 no CAGgtatgt
S9 3' (acceptor) 4 8.04 no tggggcgctttgttttgcagTTT
S10 5' (donor) 5 4.72 no AAGgtgctt
S11 3' (acceptor) 5 7.63 no ttttgttttcttctatgaagGGT
S12 5' (donor) 6 10.67 no CAGgtgagt
S13 3' (acceptor) 6 7.59 no ttgtcccttaattgcttcagGTG
S14 5' (donor) 7 6.91 no AAAgtaaga
S15 3' (acceptor) 7 12.99 no tctcttttgttttcctccagGTT
S16 5' (donor) 8 -18.72 no TTCaaaaca
S17 3' (acceptor) 8 9.24 no gcacccttttcgcatttcagATG
S18 3' (acceptor) 9 7.78 no tcattgaaccgttctctcagGTA
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
17164 1 1
17164 2 2
17164 3 3
17164 4 4
17164 5 5
17164 6 6
17164 7 7
17164 9 8
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 4
 Transcription termination & last exon(s) 
7 1
8 1
9 1
 Exon skipping 
8 6
 Alternative 5' splice sites 
1 2
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
3 Expression Expression
4 Expression Expression
5 Expression Expression
6 Expression Expression
7 Expression Expression
8 Expression Expression
9 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 825 106640031-106640855 825 sequence download
1 Intron 826 - 1980 106638876-106640030 1155 sequence -
2 Exon 1981 - 2107 106638749-106638875 127 sequence download
2 Intron 2108 - 2293 106638563-106638748 186 sequence -
3 Exon 2294 - 2399 106638457-106638562 106 sequence download
3 Intron 2400 - 3941 106636915-106638456 1542 sequence -
4 Exon 3942 - 4115 106636741-106636914 174 sequence download
4 Intron 4116 - 5806 106635050-106636740 1691 sequence -
5 Exon 5807 - 5947 106634909-106635049 141 sequence download
5 Intron 5948 - 6076 106634780-106634908 129 sequence -
6 Exon 6077 - 6157 106634699-106634779 81 sequence download
6 Intron 6158 - 6789 106634067-106634698 632 sequence -
7 Exon 6790 - 6890 106633966-106634066 101 sequence download
7 Intron 6891 - 9946 106630910-106633965 3056 sequence -
8 Exon 9947 - 10809 106630047-106630909 863 sequence download
8 Intron 10810 - 11070 106629786-106630046 261 sequence -
9 Exon 11071 - 11338 106629518-106629785 268 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4 
 Supporting GenBank
accession identifers 		 AK164730
 AK041591
 AK169977
NM_015810
BC119131
 AK042777
BC144810
 Length  78 67 1060 629
 Number of ATGs in frame  0 0 3 2
 Total number of ATGs  0 0 7 6
 Number of GTGs in frame  1 1 8 7
 Total number of GTGs  6 5 28 19
 Number of CTGs in frame  0 0 5 5
 Total number of CTGs  4 4 27 19
 Number of micro ORFs in frame  0 0 1 0
 Total number of micro ORFs  0 0 3 2
 GC percentage  63 60 54 60
 Number of pyrimidine tracks  0 0 3 1
Close 3' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 AK164730
 AK042777
 NM_015810
AK041591
AK169977
BC144810
BC119131
 Length  2318 808 102
 Number of ATGs in frame  7 3 0
 Total number of ATGs  31 15 0
 Number of GTGs in frame  24 6 1
 Total number of GTGs  60 22 1
 Number of CTGs in frame  13 4 0
 Total number of CTGs  29 11 0
 GC percentage  44 43 25
 Number of pyrimidine tracks  15 3 0
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-216a 10083 - 10105 106630751 - 106630773 miranda
M2 mmu-miR-216b 10598 - 10620 106630236 - 106630258 miranda
M3 mmu-miR-136 10678 - 10701 106630155 - 106630178 miranda
M4 mmu-miR-377 10694 - 10717 106630139 - 106630162 miranda
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Binding EXONT:006096 Myc-type, basic helix-loop-helix (bHLH) domain 2 6751 6939
Localization EXONT:000064 Nuclear_localization_signal 2 6709 6771
Localization EXONT:000017 Cilia targeting sequence 2 6829 6843
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 2 6496 6795
Structure EXONT:000024 Compositionally_biased_region_of_peptide 2 6640 6690
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 2 7216 7302
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 2 7309 7329
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 2 7360 7386
PTM EXONT:000797 Ubiquitinylated lysine 2 6520 6522
PTM EXONT:000161 O-phospho-L-serine 2 7087 7089
Unclassified EXONT:009534 Neurogenic differentiation factor, domain of unknown function 2 6931 7287
Gene Polg2

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Extended region