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Previous gene FasterDB identifier: 1319 - Vstm2a (Vstm2) V-set and transmembrane domain containing 2A Gene Next gene
Gene Close
Symbol Vstm2a
Synonyms Vstm2
Description V-set and transmembrane domain containing 2A Gene
EnsEMBL link ENSMUSG00000048834
Chromosome 11 - forward strand
Chromosomal location
(UCSC link)		 16157726 - 16327315 (169590bp)
Sequence sequence
Associated transcripts AK033048 NM_145967 AK032473 BC027127 AK079096 AK137363 AK134954
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 5 138 NM_145967
AK032473
BC027127
AK137363
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 16157726 AK033048
P2 1 3 16157728 AK032473
P3 1 79 16157804 AK079096
AK137363
P4 4 5496 16163221 AK134954
Protein prediction Close
 Transcript name   Sequence 
AK033048 sequence
NM_145967 sequence
AK032473 sequence
BC027127 sequence
AK079096 sequence
AK137363 sequence
AK134954 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 4 5239 16162964 no AK033048 Full_length
PA2 5 25580 16183305 ATTAAA no AK032473 Full_length
PA3 5 26474 16184199 AATAAA no AK137363 Full_length
PA4 5 26829 16184554 AATAAA no NM_145967 Cdna
PA5 5 26829 16184554 AATAAA no AK134954 Full_length
PA6 8 169590 16327315 no AK079096 Full_length

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 5 AK079096
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 11 no AAGgtaagt
S2 5' (donor) 2 7.13 no CAGgtagcc
S3 3' (acceptor) 2 8.09 no ggtgcatttttgtcttgcagCAA
S4 5' (donor) 3 6.96 no AGTgtgagt
S5 3' (acceptor) 3 10.5 no tttgcacccttgtcctacagGTG
S6 5' (donor) 4 9.46 no CAGgtatga
S7 3' (acceptor) 4 6.76 no tttcacctgcaatttttcagACA
S8 5' (donor) 5 -9.45 no AAGtaagat
S9 3' (acceptor) 5 8.59 no gtatgtgttgttgtttgcagTGC
S10 3' (acceptor) 5 10.72 yes tcttataacttcttccgcagGTG
S11 5' (donor) 6 9.72 no AAAgtaagt
S12 3' (acceptor) 6 9.77 no ttgctttcttcccttggcagCTT
S13 5' (donor) 7 11.01 no ATGgtaagt
S14 3' (acceptor) 7 7.02 no aactattcctatctttttagCCT
S15 3' (acceptor) 8 12.5 no tcctctgtttttcttttaagGTG
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
13092 1 1
13092 2 2
13092 3 3
13092 4 4
13092 5 10
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 3
4 1
 Transcription termination & last exon(s) 
4 1
5 4
8 1
 Exon skipping 
5 1
 Alternative 3' splice sites 
5 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
3 Expression Expression
4 Expression Expression
5 Expression Expression
6 Expression Expression
7 Expression Expression
8 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 364 16157726 - 16158089 364 sequence download
1 Intron 365 - 2132 16158090 - 16159857 1768 sequence -
2 Exon 2133 - 2299 16159858 - 16160024 167 sequence download
2 Intron 2300 - 3715 16160025 - 16161440 1416 sequence -
3 Exon 3716 - 3766 16161441 - 16161491 51 sequence download
3 Intron 3767 - 5191 16161492 - 16162916 1425 sequence -
4 Exon 5192 - 5528 16162917 - 16163253 337 sequence download
4 Intron 5529 - 23980 16163254 - 16181705 18452 sequence -
5 Exon 23981 - 26829 16181706 - 16184554 2849 sequence download
5 Intron 26830 - 110494 16184555 - 16268219 83665 sequence -
6 Exon 110495 - 110654 16268220 - 16268379 160 sequence download
6 Intron 110655 - 151997 16268380 - 16309722 41343 sequence -
7 Exon 151998 - 152083 16309723 - 16309808 86 sequence download
7 Intron 152084 - 168928 16309809 - 16326653 16845 sequence -
8 Exon 168929 - 169590 16326654 - 16327315 662 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 AK137363
 NM_145967
BC027127
 AK032473
 Length  206 284 283
 Number of ATGs in frame  0 0 0
 Total number of ATGs  3 3 3
 Number of GTGs in frame  2 2 2
 Total number of GTGs  5 7 7
 Number of CTGs in frame  1 2 2
 Total number of CTGs  3 6 6
 Number of micro ORFs in frame  0 0 0
 Total number of micro ORFs  2 2 2
 GC percentage  60 62 63
 Number of pyrimidine tracks  3 3 3
Close 3' untranslated regions 
 UTR 1 
 Supporting GenBank
accession identifers 		 NM_145967
AK137363
BC027127
AK032473
 Length  2634
 Number of ATGs in frame  19
 Total number of ATGs  62
 Number of GTGs in frame  12
 Total number of GTGs  46
 Number of CTGs in frame  9
 Total number of CTGs  17
 GC percentage  33
 Number of pyrimidine tracks  21
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-376a_star 24262 - 24269 16181987 - 16181994 pictar
M2 mmu-miR-342-5p 24312 - 24318 16182037 - 16182043 pita
M3 mmu-miR-669d 24335 - 24341 16182060 - 16182066 pita
M4 mmu-miR-542-3p 24361 - 24382 16182086 - 16182107 miranda
M5 mmu-miR-542-3p 24375 - 24381 16182100 - 16182106 pita
M6 mmu-miR-669e 24469 - 24475 16182194 - 16182200 pita
M7 mmu-miR-653 24481 - 24501 16182206 - 16182226 miranda
M8 mmu-miR-203 24512 - 24518 16182237 - 16182243 pita
M9 mmu-miR-677 24516 - 24522 16182241 - 16182247 pita
M10 mmu-miR-382 24706 - 24727 16182431 - 16182452 miranda
M11 mmu-miR-96 24829 - 24850 16182554 - 16182575 miranda
M12 mmu-miR-96 24842 - 24849 16182567 - 16182574 pita
M13 mmu-miR-509-3p 24864 - 24871 16182589 - 16182596 pita
M14 mmu-miR-374 24869 - 24892 16182594 - 16182617 miranda
M15 mmu-miR-703 24875 - 24882 16182600 - 16182607 pita
M16 mmu-miR-297 24889 - 24896 16182614 - 16182621 pictar
M17 mmu-miR-377 24965 - 24991 16182690 - 16182716 miranda
M18 mmu-miR-1-2-as 24980 - 24986 16182705 - 16182711 pita
M19 mmu-miR-377 24984 - 24990 16182709 - 16182715 pita
M20 mmu-miR-377 24984 - 24991 16182709 - 16182716 targetscan
M21 mmu-miR-297 25047 - 25054 16182772 - 16182779 pictar
M22 mmu-miR-137 25051 - 25074 16182776 - 16182799 miranda
M23 mmu-miR-297 25068 - 25075 16182793 - 16182800 pictar
M24 mmu-miR-539 25135 - 25155 16182860 - 16182880 miranda
M25 mmu-miR-877 25193 - 25199 16182918 - 16182924 pita
M26 mmu-miR-590-3p 25205 - 25225 16182930 - 16182950 miranda
M27 mmu-miR-590-3p 25218 - 25224 16182943 - 16182949 pita
M28 mmu-miR-361 25219 - 25241 16182944 - 16182966 miranda
M29 mmu-miR-466i 25257 - 25264 16182982 - 16182989 pita
M30 mmu-miR-466f-3p 25258 - 25265 16182983 - 16182990 pita
M31 mmu-miR-153 25263 - 25270 16182988 - 16182995 pictar
M32 mmu-miR-195 25516 - 25541 16183241 - 16183266 miranda
M33 mmu-miR-15b 25520 - 25541 16183245 - 16183266 miranda
M34 mmu-miR-15a 25520 - 25541 16183245 - 16183266 miranda
M35 mmu-miR-322 25520 - 25541 16183245 - 16183266 miranda
M36 mmu-miR-16 25520 - 25541 16183245 - 16183266 miranda
M37 mmu-miR-497 25521 - 25541 16183246 - 16183266 miranda
M38 mmu-miR-374 25526 - 25548 16183251 - 16183273 miranda
M39 mmu-miR-322 25533 - 25540 16183258 - 16183265 pita
M40 mmu-miR-15a 25534 - 25542 16183259 - 16183267 targetscan
M41 mmu-miR-15a 25534 - 25540 16183259 - 16183265 pita
M42 mmu-miR-15b 25534 - 25542 16183259 - 16183267 targetscan
M43 mmu-miR-15b 25534 - 25540 16183259 - 16183265 pita
M44 mmu-miR-497 25534 - 25540 16183259 - 16183265 pita
M45 mmu-miR-16 25534 - 25542 16183259 - 16183267 targetscan
M46 mmu-miR-16 25534 - 25540 16183259 - 16183265 pita
M47 mmu-miR-195 25534 - 25542 16183259 - 16183267 targetscan
M48 mmu-miR-195 25534 - 25540 16183259 - 16183265 pita
M49 mmu-miR-322 25534 - 25542 16183259 - 16183267 targetscan
M50 mmu-miR-497 25534 - 25542 16183259 - 16183267 targetscan
M51 mmu-miR-411 25542 - 25562 16183267 - 16183287 miranda
M52 mmu-miR-411 25555 - 25561 16183280 - 16183286 pita
M53 mmu-miR-23b 25562 - 25582 16183287 - 16183307 miranda
M54 mmu-miR-23a 25562 - 25582 16183287 - 16183307 miranda
M55 mmu-miR-23a 25575 - 25581 16183300 - 16183306 pita
M56 mmu-miR-23b 25575 - 25581 16183300 - 16183306 pita
Group 2
M1 mmu-miR-448 25583 - 25605 16183308 - 16183330 miranda
M2 mmu-miR-448 25598 - 25604 16183323 - 16183329 pita
M3 mmu-miR-448 25599 - 25606 16183324 - 16183331 pictar
M4 mmu-miR-153 25599 - 25606 16183324 - 16183331 pictar
M5 mmu-miR-135b 25600 - 25623 16183325 - 16183348 miranda
M6 mmu-miR-135a 25600 - 25623 16183325 - 16183348 miranda
M7 mmu-miR-7a 25803 - 25826 16183528 - 16183551 miranda
M8 mmu-miR-7b 25803 - 25826 16183528 - 16183551 miranda
M9 mmu-miR-216b 25815 - 25835 16183540 - 16183560 miranda
M10 mmu-miR-7a 25819 - 25825 16183544 - 16183550 pita
M11 mmu-miR-7b 25819 - 25825 16183544 - 16183550 pita
M12 mmu-miR-297 25863 - 25870 16183588 - 16183595 pictar
M13 mmu-miR-297 25962 - 25969 16183687 - 16183694 pictar
M14 mmu-miR-23b 25965 - 25985 16183690 - 16183710 miranda
M15 mmu-miR-23a 25965 - 25985 16183690 - 16183710 miranda
M16 mmu-miR-448 25972 - 25979 16183697 - 16183704 pictar
M17 mmu-miR-703 26101 - 26107 16183826 - 16183832 pita
M18 mmu-miR-142-5p 26116 - 26123 16183841 - 16183848 pita
M19 mmu-miR-297 26126 - 26133 16183851 - 16183858 pictar
M20 mmu-miR-297a 26126 - 26132 16183851 - 16183857 pita
M21 mmu-miR-297b-5p 26126 - 26132 16183851 - 16183857 pita
M22 mmu-miR-297c 26126 - 26132 16183851 - 16183857 pita
M23 mmu-miR-297 26227 - 26234 16183952 - 16183959 pictar
M24 mmu-miR-153 26393 - 26400 16184118 - 16184125 pictar
M25 mmu-miR-96 26420 - 26443 16184145 - 16184168 miranda
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Catalytic EXONT:005158 Methyltransferase small domain 6,7 13349 14549
Binding EXONT:001885 Protein binding 3,4,5,6,7 1786 14573
Binding EXONT:002820 Src homology-3 domain 4,5 8384 9262
Localization EXONT:000067 Nuclear_export_signal 7,9 14550 23596
Localization EXONT:000064 Nuclear_localization_signal 12 28253 28273
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 3,4 1786 8410
Structure EXONT:000051 Beta_strand 4 8429 8446
Structure EXONT:000051 Beta_strand 5 9161 9178
Structure EXONT:000051 Beta_strand 5 9185 9208
Structure EXONT:000051 Beta_strand 5 9224 9250
PTM EXONT:000164 O4'-phospho-L-tyrosine 4 8450 8452
PTM EXONT:000240 Monomethylated L-arginine 5 9152 9154
PTM EXONT:000238 Dimethylated L-arginine 5 9176 9178
PTM EXONT:000240 Monomethylated L-arginine 5 9176 9178
PTM EXONT:000238 Dimethylated L-arginine 5 9209 9211
PTM EXONT:000240 Monomethylated L-arginine 5 9209 9211
PTM EXONT:000164 O4'-phospho-L-tyrosine 6 13337 13339
PTM EXONT:000797 Ubiquitinylated lysine 9,10 23753 25667
Gene Vstm2a

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Extended region