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Previous gene FasterDB identifier: 9390 - Mcm10 (ENSMUSG00000026669) minichromosome maintenance deficient 10 (S. cerevisiae) Gene Next gene
Gene Close
Symbol Mcm10
Synonyms ENSMUSG00000026669
Description minichromosome maintenance deficient 10 (S. cerevisiae) Gene
EnsEMBL link ENSMUSG00000026669
Chromosome 2 - reverse strand
Chromosomal location
(UCSC link)		 4911771 - 4933837 (22067bp)
Sequence sequence
Associated transcripts BC094576 NM_027290 AK030780 AK041406 BC064314 AK021211 BC120687 BC120689 AK041749 BC023236 BC039663
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
IR1 5 AK021211
IR2 11 AK041749
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 4933837 BC094576
NM_027290
P2 1 56 4933782 AK030780
P3 1 66 4933772 AK041406
P4 2 448 4933390 BC064314
P5 3 2015 4931823 AK021211
P6 8 7693 4926145 AK041749
P7 10 11234 4922604 BC023236
P8 16 16898 4916940 BC039663
Protein prediction Close
 Transcript name   Sequence 
BC094576 sequence
NM_027290 sequence
AK030780 sequence
AK041406 sequence
BC064314 sequence
AK021211 sequence
BC120687 sequence
BC120689 sequence
AK041749 sequence
BC023236 sequence
BC039663 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 6 5794 4928044 AATACA no AK021211 Full_length
PA2 10 11486 4922352 no AK041406 Full_length
PA3 12 13771 4920067 no AK041749 Full_length
PA4 21 22067 4911771 AATAAA yes BC094576 Cdna
PA5 21 22067 4911771 AATAAA yes NM_027290 Cdna
PA6 21 22067 4911771 AATAAA yes BC064314 Cdna
PA7 21 22067 4911771 AATAAA yes BC023236 Cdna
PA8 21 22067 4911771 AATAAA yes BC039663 Cdna
PA9 21 23077 4910761 ATTAAA no AI661252 3prime_est
PA10 21 23077 4910761 ATTAAA no BB029406 3prime_est

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 2 BC094576
NM_027290
AK030780
AK041406
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 8.89 no TAGgtaagc
S2 5' (donor) 2 9.16 no AAGgtaccc
S3 3' (acceptor) 2 -27.2 no tatacacaccagaagagcgcGTC
S4 5' (donor) 3 9.33 no ATGgtaagg
S5 3' (acceptor) 3 4 no taatgctgatttgtatgcagCCA
S6 5' (donor) 4 9.24 no AAGgtaacc
S7 3' (acceptor) 4 9.19 no ttccctcccatttcttctagTGG
S8 5' (donor) 5 5.67 no CTGgtaatg
S9 3' (acceptor) 5 9.73 no aatatacttttcttttgtagATG
S10 5' (donor) 6 6.46 no CAGgtgtgc
S11 3' (acceptor) 6 1.21 no tttcattttcaatcgggaagATT
S12 5' (donor) 7 8.94 no CAGgtcagt
S13 3' (acceptor) 7 6.5 no ctcttatgctaatttcctagAGT
S14 5' (donor) 8 5.32 no AGTgtaagc
S15 3' (acceptor) 8 8.02 no ttaccggcttcttgtcccagGCG
S16 5' (donor) 9 8.41 no GAGgtgagg
S17 3' (acceptor) 9 7.5 no atgaactctgttcactccagGGG
S18 5' (donor) 10 4.3 no TTGgtgggt
S19 3' (acceptor) 10 9.87 no acataagctttctcttacagGTG
S20 5' (donor) 11 10.07 no CAGgtgagg
S21 3' (acceptor) 11 10.46 no atcgcgtcttctccccgcagCAT
S22 5' (donor) 12 3.39 no TTGgtaatc
S23 3' (acceptor) 12 8.45 no tttggcacttgtcgttacagGGC
S24 5' (donor) 13 7.1 no CAGgtagag
S25 3' (acceptor) 13 8.1 no ttaatgtctacatgtttcagGTA
S26 5' (donor) 14 9.63 no GCGgtaaga
S27 3' (acceptor) 14 9.83 no gtgtgtggcctgtgttttagGGA
S28 5' (donor) 15 6.77 no AAGgtagct
S29 3' (acceptor) 15 9.78 no acttcctattcctttttaagATT
S30 5' (donor) 16 7.76 no AAGgtattg
S31 3' (acceptor) 16 8.35 no gtctatctgtttgtttctagTTA
S32 5' (donor) 17 10.03 no GAGgtgagt
S33 3' (acceptor) 17 2.86 no cctagaaccttgttctacagAGG
S34 5' (donor) 18 10.25 no ACGgtgcgt
S35 3' (acceptor) 18 7.48 no ctgtgggttttgtcattcagGCT
S36 5' (donor) 19 8.14 no CCGgtatga
S37 3' (acceptor) 19 7.5 no ggtctgtgtcctctgtgcagTGC
S38 5' (donor) 20 9.79 no AAGgtatgt
S39 3' (acceptor) 20 7.86 no agccattttttctgtttcagTAA
S40 3' (acceptor) 21 9.56 no ctcgtgcactctcctcctagGAG
Conserved exons Close
 Gene identifier human   Position mouse  Position human 
11765 4 3
11765 5 4
11765 6 5
11765 7 6
11765 8 7
11765 9 8
11765 10 9
11765 11 10
11765 12 11
11765 13 12
11765 14 13
11765 15 14
11765 16 15
11765 17 16
11765 18 17
11765 19 18
11765 20 19
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 3
2 1
3 1
8 1
10 1
16 1
 Transcription termination & last exon(s) 
6 1
10 1
12 1
21 7
 Exon skipping 
2 4
 Intron retentions 
5 1
11 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR)
 
ESRP1/2 Yes
 
FUS Yes
 
HNRNPA1
 
HNRNPA2B1
 
HNRNPAB
 
HNRNPC
 
HNRNPF-H
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM
 
HNRNPU
 
MBNL3KO/MBNL3WT/MBNL3C2C12 Yes
 
Nova/Nova1 Yes
 
PTBP1/2 Yes
 
QKI
 
RBFOX2
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 Yes
 
SRSF2 Yes
 
SRSF5 (SRP40)
 
TIA1/TIAL1
 
TRA2A
 
TRA2B
 
YBX1
 
Expression Close
 Exon position   Tissues   Cell lines 
1 Expression Expression
2 Expression Expression
3 Expression Expression
4 Expression Expression
5 Expression Expression
6 Expression Expression
7 Expression Expression
8 Expression Expression
9 Expression Expression
10 Expression Expression
11 Expression Expression
12 Expression Expression
13 Expression Expression
14 Expression Expression
15 Expression Expression
16 Expression Expression
17 Expression Expression
18 Expression Expression
19 Expression Expression
20 Expression Expression
21 Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 87 4933751-4933837 87 sequence download
1 Intron 88 - 447 4933391-4933750 360 sequence -
2 Exon 448 - 897 4932941-4933390 450 sequence download
2 Intron 898 - 2016 4931822-4932940 1119 sequence -
3 Exon 2017 - 2103 4931735-4931821 87 sequence download
3 Intron 2104 - 3979 4929859-4931734 1876 sequence -
4 Exon 3980 - 4312 4929526-4929858 333 sequence download
4 Intron 4313 - 5359 4928479-4929525 1047 sequence -
5 Exon 5360 - 5464 4928374-4928478 105 sequence download
5 Intron 5465 - 5590 4928248-4928373 126 sequence -
6 Exon 5591 - 5725 4928113-4928247 135 sequence download
6 Intron 5726 - 6213 4927625-4928112 488 sequence -
7 Exon 6214 - 6448 4927390-4927624 235 sequence download
7 Intron 6449 - 7680 4926158-4927389 1232 sequence -
8 Exon 7681 - 7846 4925992-4926157 166 sequence download
8 Intron 7847 - 8616 4925222-4925991 770 sequence -
9 Exon 8617 - 8784 4925054-4925221 168 sequence download
9 Intron 8785 - 11411 4922427-4925053 2627 sequence -
10 Exon 11412 - 11528 4922310-4922426 117 sequence download
10 Intron 11529 - 11735 4922103-4922309 207 sequence -
11 Exon 11736 - 11932 4921906-4922102 197 sequence download
11 Intron 11933 - 13011 4920827-4921905 1079 sequence -
12 Exon 13012 - 13112 4920726-4920826 101 sequence download
12 Intron 13113 - 13951 4919887-4920725 839 sequence -
13 Exon 13952 - 14062 4919776-4919886 111 sequence download
13 Intron 14063 - 14149 4919689-4919775 87 sequence -
14 Exon 14150 - 14258 4919580-4919688 109 sequence download
14 Intron 14259 - 15459 4918379-4919579 1201 sequence -
15 Exon 15460 - 15688 4918150-4918378 229 sequence download
15 Intron 15689 - 16926 4916912-4918149 1238 sequence -
16 Exon 16927 - 17071 4916767-4916911 145 sequence download
16 Intron 17072 - 18109 4915729-4916766 1038 sequence -
17 Exon 18110 - 18222 4915616-4915728 113 sequence download
17 Intron 18223 - 18935 4914903-4915615 713 sequence -
18 Exon 18936 - 19049 4914789-4914902 114 sequence download
18 Intron 19050 - 19768 4914070-4914788 719 sequence -
19 Exon 19769 - 19914 4913924-4914069 146 sequence download
19 Intron 19915 - 20654 4913184-4913923 740 sequence -
20 Exon 20655 - 20697 4913141-4913183 43 sequence download
20 Intron 20698 - 21315 4912523-4913140 618 sequence -
21 Exon 21316 - 22067 4911771-4912522 752 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4   UTR 5   UTR 6 
 Supporting GenBank
accession identifers 		 BC064314
BC120687
BC120689
 BC094576
NM_027290
 AK030780
 AK021211
 BC023236
 BC039663
 Length  530 167 112 82 217 342
 Number of ATGs in frame  2 0 0 0 0 1
 Total number of ATGs  8 0 0 0 0 3
 Number of GTGs in frame  4 1 1 1 4 8
 Total number of GTGs  9 4 4 3 4 13
 Number of CTGs in frame  3 1 1 0 1 1
 Total number of CTGs  8 1 1 0 3 3
 Number of micro ORFs in frame  2 0 0 0 0 0
 Total number of micro ORFs  6 0 0 0 0 1
 GC percentage  45 56 56 51 46 45
 Number of pyrimidine tracks  5 2 2 2 1 0
Close 3' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 AK021211
 AK041749
 BC094576
NM_027290
BC064314
BC023236
BC039663
AK030780
BC120687
BC120689
 Length  274 1836 668
 Number of ATGs in frame  0 17 5
 Total number of ATGs  1 37 16
 Number of GTGs in frame  4 12 6
 Total number of GTGs  11 43 25
 Number of CTGs in frame  0 11 8
 Total number of CTGs  2 42 19
 GC percentage  48 49 49
 Number of pyrimidine tracks  1 11 10
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 mmu-miR-139-5p 5537 - 5558 4928280 - 4928301 miranda
M2 mmu-miR-143 5580 - 5600 4928238 - 4928258 miranda
Group 2
M1 mmu-miR-491 5658 - 5679 4928159 - 4928180 miranda
Group 3
M1 mmu-miR-421 5747 - 5771 4928067 - 4928091 miranda
Group 4
M1 mmu-miR-129-5p 12552 - 12575 4921263 - 4921286 miranda
Group 5
M1 mmu-miR-301a 21868 - 21889 4911949 - 4911970 miranda
M2 mmu-miR-301b 21868 - 21889 4911949 - 4911970 miranda
M3 mmu-miR-28 22023 - 22044 4911794 - 4911815 miranda
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Binding EXONT:002820 Src homology-3 domain 4 110116 110295
Binding EXONT:001885 Protein binding 4 110116 110295
Binding EXONT:001885 Protein binding 5 136481 136663
Binding EXONT:002820 Src homology-3 domain 5 136490 136660
Binding EXONT:001885 Protein binding 5,6 136724 148222
Binding EXONT:002820 Src homology-3 domain 5 136733 136990
Binding EXONT:002557 SH2 domain 5,6 136988 148219
Structure EXONT:000051 Beta_strand 4 110125 110145
Structure EXONT:000051 Beta_strand 4 110161 110172
Structure EXONT:000051 Beta_strand 4 110194 110211
Structure EXONT:000051 Beta_strand 4 110215 110226
Structure EXONT:000051 Beta_strand 4 110230 110238
Structure EXONT:000051 Beta_strand 4 110254 110262
Structure EXONT:000051 Beta_strand 4 110275 110286
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 4,5 110329 136462
Structure EXONT:000051 Beta_strand 5 136493 136504
Structure EXONT:000051 Beta_strand 5 136559 136579
Structure EXONT:000051 Beta_strand 5 136589 136609
Structure EXONT:000051 Beta_strand 5 136616 136633
Structure EXONT:000037 Peptide_helix 5 136634 136642
Structure EXONT:000051 Beta_strand 5 136643 136651
Structure EXONT:000051 Beta_strand 5 136736 136762
Structure EXONT:000051 Beta_strand 5 136778 136789
Structure EXONT:000051 Beta_strand 5 136814 136828
Structure EXONT:000022 Polypeptide_turn_motif 5 136838 136846
Structure EXONT:000051 Beta_strand 5 136850 136867
Structure EXONT:000022 Polypeptide_turn_motif 5 136868 136876
Structure EXONT:000051 Beta_strand 5 136877 136894
Structure EXONT:000051 Beta_strand 5 136901 136912
Structure EXONT:000037 Peptide_helix 5 137024 137056
Structure EXONT:000051 Beta_strand 5 137069 137086
Structure EXONT:000051 Beta_strand 5 137090 137098
Structure EXONT:000051 Beta_strand 6 148040 148054
Structure EXONT:000051 Beta_strand 6 148061 148069
Structure EXONT:000051 Beta_strand 6 148073 148096
Structure EXONT:000051 Beta_strand 6 148103 148114
Structure EXONT:000051 Beta_strand 6 148121 148135
Structure EXONT:000037 Peptide_helix 6 148136 148165
Structure EXONT:000051 Beta_strand 6 148172 148180
Structure EXONT:000022 Polypeptide_turn_motif 6 148184 148192
PTM EXONT:000188 N-acetyl-L-threonine 4 110116 110118
PTM EXONT:000162 O-phospho-L-threonine 4 110221 110223
PTM EXONT:000162 O-phospho-L-threonine 4 110254 110256
PTM EXONT:000164 O4'-phospho-L-tyrosine 4 110260 110262
PTM EXONT:000161 O-phospho-L-serine 4 110293 110295
PTM EXONT:000161 O-phospho-L-serine 4 110308 110310
PTM EXONT:000162 O-phospho-L-threonine 4 110332 110334
PTM EXONT:000161 O-phospho-L-serine 5 136418 136420
PTM EXONT:000162 O-phospho-L-threonine 5 136424 136426
PTM EXONT:000161 O-phospho-L-serine 5 136430 136432
PTM EXONT:000162 O-phospho-L-threonine 5 136433 136435
PTM EXONT:000164 O4'-phospho-L-tyrosine 5 136445 136447
PTM EXONT:000161 O-phospho-L-serine 5 136460 136462
PTM EXONT:000164 O4'-phospho-L-tyrosine 5 136478 136480
PTM EXONT:000164 O4'-phospho-L-tyrosine 5 136961 136963
PTM EXONT:000164 O4'-phospho-L-tyrosine 6 148106 148108
Gene Mcm10

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 15Exon 16Exon 17Exon 18Exon 19Exon 20Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 15Exon 16Exon 17Exon 18Exon 19Exon 20Exon 21Extended region