FASTERDB: Download Sequences

Get sequences of interest from your uploaded list
Enter your list in the box below :
Upload a file or paste in textarea Gene ID and Exon Position as this is shown below: IDgene;ExonPosition IDgene;ExonPosition Then you have to select the analyze you want to proceed.
Or, upload your file :

Select sequences parameters :
Exon	Intron	Jonction
Full Exon : Min Length : Max Length : Exon 5 Prime Region : Length : Exon 3 Prime Region : Length :	Full Intron : Min Length : Max Length : Intron Backward : Length : Intron Forward : Length :	5 Prime Jonction : Length Backward : Length Forward : 3 Prime Jonction : Length Backward : Length Forward :

Get sequences of interest from your uploaded list

Enter your list in the box below :

Upload a file or paste in textarea Gene ID and Exon Position as this is shown below:
IDgene;ExonPosition
IDgene;ExonPosition
Then you have to select the analyze you want to proceed.

Or, upload your file :

Select sequences parameters :

Exon

Intron

Jonction

Full Exon :

Min Length :
Max Length :

Exon 5 Prime Region :

Length :

Exon 3 Prime Region :

Length :

Full Intron :

Min Length :
Max Length :

Intron Backward :

Length :

Intron Forward :

Length :

5 Prime Jonction :

Length Backward :
Length Forward :

3 Prime Jonction :

Length Backward :
Length Forward :

Get properties of sequences uploaded in your list
Enter your list in the box below :
Upload a file or paste in textarea Gene ID and Exon Position as this is shown below: IDgene;ExonPosition IDgene;ExonPosition
Or, upload your file :

Get specific exon from your customized analyze
Number of sequences :
First, you have to choice, how many exon control you want to get. Then, you have to select the analyze you want to proceed. You can combine certain analysis together.
Filter by properties :
Alternative First Exon : Alternative Last Exon :	Single Exon Skipped : Multiple Exon Skipped : Exon Constituve :	Cut-off for 5 Prime Splice Site Force : Max : Min : Cut-off for 3 Prime Splice Site Force : Max : Min :

Get specific exon from your customized analyze

Number of sequences :

First, you have to choice, how many exon control you want to get.
Then, you have to select the analyze you want to proceed.
You can combine certain analysis together.

Filter by properties :

Alternative First Exon :
Alternative Last Exon :

Single Exon Skipped :
Multiple Exon Skipped :
Exon Constituve :

Cut-off for 5 Prime Splice Site Force :

Max :
Min :

Cut-off for 3 Prime Splice Site Force :

Max :
Min :

Motif Search
Enter your list in the box below :
Upload a file or paste in textarea Gene ID, Exon Position, Sequence and Chromosome Localisation as this is shown below: IDgene;ExonPosition;Sequence;Chr?:?-?:strand IDgene;ExonPosition;ExonPosition;Chr?:?-?:strand Then, you have to select the analyze you want to proceed. If you select Splicing Factor Finder, you can choose a threshold. Upload a file or select manually several Motifs as this is shown below: Motif1 Motif2 Motifs accepted by Splicing Factor Finder are only : tctt,tgctg,ctctct,tagggw,tagaca,tagagt,atagca ttgggt,tgtggg,ggcgg,gggtg,aagtgtt,gaagaa ghvvganr,gaagaggaag,gryymcyr,tgcygyy,crsmsgw,tgrwgvh,ctcktcy wcwwc,yywcwsg,yrcrkm,wggacra,acgagagay,gacgac,tgcatg,ygctky,ycay,caaccacaa
Or, upload your file :

Cut-Off : Select Analyze : Word Search Splicing Factor Finder
Email : (Mandatory)
Upload a list of motifs :
Or, you can select motif one by one below :
Motif :

Motif Search

Enter your list in the box below :

Upload a file or paste in textarea Gene ID, Exon Position, Sequence and Chromosome Localisation as this is shown below:
IDgene;ExonPosition;Sequence;Chr?:?-?:strand
IDgene;ExonPosition;ExonPosition;Chr?:?-?:strand
Then, you have to select the analyze you want to proceed.
If you select Splicing Factor Finder, you can choose a threshold.
Upload a file or select manually several Motifs as this is shown below:
Motif1
Motif2
Motifs accepted by Splicing Factor Finder are only :
tctt,tgctg,ctctct,tagggw,tagaca,tagagt,atagca
ttgggt,tgtggg,ggcgg,gggtg,aagtgtt,gaagaa
ghvvganr,gaagaggaag,gryymcyr,tgcygyy,crsmsgw,tgrwgvh,ctcktcy
wcwwc,yywcwsg,yrcrkm,wggacra,acgagagay,gacgac,tgcatg,ygctky,ycay,caaccacaa

Or, upload your file :

Cut-Off : Select Analyze : Word Search Splicing Factor Finder

Email : (Mandatory)

Upload a list of motifs :

Or, you can select motif one by one below :

Motif :