Gene | |||
---|---|---|---|
Symbol | Ddx17 | ||
Synonyms | LOC381024, p72 | ||
Description | DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 Gene | ||
EnsEMBL link | ENSMUSG00000055065 | ||
Chromosome | 15 - reverse strand | ||
Chromosomal location (UCSC link) |
79358126 - 79377171 (19046bp) | ||
Sequence | sequence | ||
Associated transcripts | BC096036 NM_199080 NM_001040187 NM_199079 AK039888 AK161001 AK161012 BC062910 AK152749 AK152831 AK151061 AK191519 NM_152806 BC038378 BC027758 AK152910 AK027954 |
Alternative 3' splice site (acceptor) | ||||
---|---|---|---|---|
Identifier | Position | Distance (bp) | Transcript | |
ASS1 | 12 | 1296 | BC096036 NM_199080 NM_001040187 AK152749 AK152831 AK151061 |
Alternative 5' splice sites (donor) | ||||
---|---|---|---|---|
Identifier | Position | Distance (bp) | Transcript | |
ASS1 | 6 | -108 | AK191519 |
|
ASS2 | 12 | -6 | BC096036 NM_001040187 |
Transcription start sites | ||||
---|---|---|---|---|
Identifier | Position | Gene coordinates | Chromosomal coordinates | Transcript |
P1 | 1 | 1 | 79377171 | BC096036 NM_001040187 NM_199080 |
P2 | 1 | 182 | 79376990 | AK039888 |
P3 | 1 | 186 | 79376986 | AK161012 AK161001 |
P4 | 1 | 226 | 79376946 | AK151061 AK152831 AK152749 |
P5 | 12 | 14886 | 79362286 | AK152910 |
P6 | 12 | 14975 | 79362197 | AK027954 |
Protein prediction | |
---|---|
Transcript name | Sequence |
BC096036 | sequence |
NM_199080 | sequence |
NM_001040187 | sequence |
NM_199079 | sequence |
AK039888 | sequence |
AK161001 | sequence |
AK161012 | sequence |
BC062910 | sequence |
AK152749 | sequence |
AK152831 | sequence |
AK151061 | sequence |
AK191519 | sequence |
NM_152806 | sequence |
BC038378 | sequence |
BC027758 | sequence |
AK152910 | sequence |
AK027954 | sequence |
Polyadenylation | |||||||
---|---|---|---|---|---|---|---|
Identifier | Position | Gene coordinates of cleavage site | Chromosomal coordinates of cleavage site | Pattern | PolyA tail | Accession number | Type |
PA1 | 11 | 11203 | 79365969 | no | AK039888 | Full_length | |
PA2 | 11 | 12081 | 79365091 | ATTAAA | yes | NM_199079 | Cdna |
PA3 | 11 | 12081 | 79365091 | ATTAAA | yes | BC062910 | Cdna |
PA4 | 11 | 12081 | 79365091 | ATTAAA | no | AK161001 | Full_length |
PA5 | 12 | 15254 | 79361918 | no | AK161012 | Full_length | |
PA6 | 13 | 16949 | 79360223 | no | AK027954 | Full_length | |
PA7 | 13 | 17368 | 79359804 | no | AK152749 | Full_length | |
PA8 | 13 | 17368 | 79359804 | no | AK152831 | Full_length | |
PA9 | 13 | 17368 | 79359804 | no | AK151061 | Full_length | |
PA10 | 13 | 19046 | 79358126 | ATTAAA | no | NM_199080 | Cdna |
PA11 | 13 | 19046 | 79358126 | ATTAAA | no | NM_001040187 | Cdna |
PA12 | 13 | 19046 | 79358126 | ATTAAA | no | NM_152806 | Cdna |
Conserved exons | ||
---|---|---|
Gene identifier human | Position mouse | Position human |
2275 | 1 | 2 |
2275 | 2 | 3 |
2275 | 3 | 4 |
2275 | 4 | 5 |
2275 | 5 | 6 |
2275 | 6 | 7 |
2275 | 7 | 8 |
2275 | 8 | 9 |
2275 | 9 | 10 |
2275 | 10 | 11 |
2275 | 11 | 12 |
2275 | 12 | 14 |
Report | |
---|---|
Exon | Number of supporting transcripts |
Transcription initiation & first exon(s) | |
1 | 4 |
12 | 2 |
Transcription termination & last exon(s) | |
11 | 4 |
12 | 1 |
13 | 7 |
Alternative 3' splice sites | |
12 | 1 |
Alternative 5' splice sites | |
6 | 1 |
12 | 1 |
Expression | ||
---|---|---|
Exon position | Tissues | Cell lines |
1 | Expression | Expression |
2 | Expression | Expression |
3 | Expression | Expression |
4 | Expression | Expression |
5 | Expression | Expression |
6 | Expression | Expression |
7 | Expression | Expression |
8 | Expression | Expression |
9 | Expression | Expression |
10 | Expression | Expression |
11 | Expression | Expression |
12 | Expression | Expression |
13 | Expression | Expression |
Exon-Intron | ||||||
---|---|---|---|---|---|---|
Position | Type | Gene coordinates | Chromosomal coordinates | Length | Sequence | Features |
1 | Exon | 1 - 547 | 79376625-79377171 | 547 | sequence | download |
1 | Intron | 548 - 2885 | 79374287-79376624 | 2338 | sequence | - |
2 | Exon | 2886 - 3036 | 79374136-79374286 | 151 | sequence | download |
2 | Intron | 3037 - 4155 | 79373017-79374135 | 1119 | sequence | - |
3 | Exon | 4156 - 4255 | 79372917-79373016 | 100 | sequence | download |
3 | Intron | 4256 - 5574 | 79371598-79372916 | 1319 | sequence | - |
4 | Exon | 5575 - 5708 | 79371464-79371597 | 134 | sequence | download |
4 | Intron | 5709 - 6263 | 79370909-79371463 | 555 | sequence | - |
5 | Exon | 6264 - 6329 | 79370843-79370908 | 66 | sequence | download |
5 | Intron | 6330 - 7281 | 79369891-79370842 | 952 | sequence | - |
6 | Exon | 7282 - 7423 | 79369749-79369890 | 142 | sequence | download |
6 | Intron | 7424 - 7763 | 79369409-79369748 | 340 | sequence | - |
7 | Exon | 7764 - 7924 | 79369248-79369408 | 161 | sequence | download |
7 | Intron | 7925 - 8010 | 79369162-79369247 | 86 | sequence | - |
8 | Exon | 8011 - 8183 | 79368989-79369161 | 173 | sequence | download |
8 | Intron | 8184 - 9196 | 79367976-79368988 | 1013 | sequence | - |
9 | Exon | 9197 - 9307 | 79367865-79367975 | 111 | sequence | download |
9 | Intron | 9308 - 9683 | 79367489-79367864 | 376 | sequence | - |
10 | Exon | 9684 - 9745 | 79367427-79367488 | 62 | sequence | download |
10 | Intron | 9746 - 10725 | 79366447-79367426 | 980 | sequence | - |
11 | Exon | 10726 - 10785 | 79366387-79366446 | 60 | sequence | download |
11 | Intron | 10786 - 13531 | 79363641-79366386 | 2746 | sequence | - |
12 | Exon | 13532 - 15070 | 79362102-79363640 | 1539 | sequence | download |
12 | Intron | 15071 - 16224 | 79360948-79362101 | 1154 | sequence | - |
13 | Exon | 16225 - 19046 | 79358126-79360947 | 2822 | sequence | download |
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