Gene | |||
---|---|---|---|
Symbol | DDX17 | ||
Synonyms | P72 | ||
Description | DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 | ||
EnsEMBL link | ENSG00000100201 | ||
Chromosome | 22 - reverse strand | ||
Chromosomal location (UCSC link) |
38879445 - 38903665 (24221bp) | ||
Sequence | sequence | ||
Associated transcripts | AK303049 NM_006386 NM_001098504 BC029553 AK024985 AK074224 AB209595 AL713763 BC000595 CR456432 U59321 AF131750 NM_030881 NM_001098505 |
Alternative 3' splice site (acceptor) | ||||
---|---|---|---|---|
Identifier | Position | Distance (bp) | Transcript | |
ASS1 | 15 | 1928 | BC029553 |
Alternative 5' splice sites (donor) | ||||
---|---|---|---|---|
Identifier | Position | Distance (bp) | Transcript | |
ASS1 | 14 | -6 | NM_006386 AK024985 AK074224 BC000595 U59321 NM_001098505 |
Exon deletions | ||
---|---|---|
Identifier | Position | Transcript |
ED1 | 15 | AB209595 |
Transcription start sites | ||||
---|---|---|---|---|
Identifier | Position | Gene coordinates | Chromosomal coordinates | Transcript |
P1 | 1 | 1 | 38903665 | AK303049 |
P2 | 2 | 1321 | 38902345 | NM_006386 NM_001098504 |
P3 | 2 | 1353 | 38902313 | AK024985 AK074224 |
P4 | 14 | 18700 | 38884966 | AF131750 |
Protein prediction | |
---|---|
Transcript name | Sequence |
AK303049 | sequence |
NM_006386 | sequence |
NM_001098504 | sequence |
BC029553 | sequence |
AK024985 | sequence |
AK074224 | sequence |
AB209595 | sequence |
AL713763 | sequence |
BC000595 | sequence |
CR456432 | sequence |
U59321 | sequence |
AF131750 | sequence |
NM_030881 | sequence |
NM_001098505 | sequence |
Polyadenylation | |||||||
---|---|---|---|---|---|---|---|
Identifier | Position | Gene coordinates of cleavage site | Chromosomal coordinates of cleavage site | Pattern | PolyA tail | Accession number | Type |
PA1 | 13 | 17348 | 38886318 | no | AK303049 | Full_length | |
PA2 | 15 | 21952 | 38881714 | yes | AK024985 | Full_length | |
PA3 | 15 | 21952 | 38881714 | yes | AK074224 | Full_length | |
PA4 | 15 | 24221 | 38879445 | AATAAA | yes | NM_006386 | Cdna |
PA5 | 15 | 24221 | 38879445 | AATAAA | yes | NM_001098504 | Cdna |
PA6 | 15 | 24221 | 38879445 | AATAAA | no | AB209595 | Cdna |
PA7 | 15 | 24221 | 38879445 | AATAAA | yes | NM_030881 | Cdna |
PA8 | 15 | 24221 | 38879445 | AATAAA | yes | NM_001098505 | Cdna |
Exon skipping | ||
---|---|---|
Identifier | Position | Transcript |
ES1 | 2 | AK303049 |
ES2 | 3 | BC029553 |
ES3 | 4 | BC029553 |
ES4 | 5 | BC029553 |
ES5 | 6 | BC029553 |
ES6 | 7 | BC029553 |
ES7 | 8 | BC029553 |
ES8 | 9 | BC029553 |
ES9 | 10 | BC029553 |
ES10 | 11 | BC029553 |
ES11 | 12 | BC029553 |
ES12 | 13 | NM_006386 NM_001098504 BC029553 AK024985 AK074224 AB209595 BC000595 CR456432 U59321 |
ES13 | 14 | BC029553 |
Conserved exons | ||
---|---|---|
Gene identifier mouse | Position human | Position mouse |
16681 | 2 | 1 |
16681 | 3 | 2 |
16681 | 4 | 3 |
16681 | 5 | 4 |
16681 | 6 | 5 |
16681 | 7 | 6 |
16681 | 8 | 7 |
16681 | 9 | 8 |
16681 | 10 | 9 |
16681 | 11 | 10 |
16681 | 12 | 11 |
16681 | 14 | 12 |
Report | |
---|---|
Exon | Number of supporting transcripts |
Transcription initiation & first exon(s) | |
1 | 1 |
2 | 2 |
14 | 1 |
Transcription termination & last exon(s) | |
13 | 1 |
15 | 7 |
Exon skipping | |
2 | 1 |
3 | 1 |
4 | 1 |
5 | 1 |
6 | 1 |
7 | 1 |
8 | 1 |
9 | 1 |
10 | 1 |
11 | 1 |
12 | 1 |
13 | 9 |
14 | 1 |
Alternative 3' splice sites | |
15 | 1 |
Alternative 5' splice sites | |
14 | 1 |
Exon deletions | |
15 | 1 |
Intron retentions | |
12 | 1 |
13 | 1 |
Expression | |||
---|---|---|---|
Exon position | Tissues | Cell lines | Cancer cell lines |
1 | Expression | Expression | Expression |
2 | Expression | Expression | Expression |
3 | Expression | Expression | Expression |
4 | Expression | Expression | Expression |
5 | Expression | Expression | Expression |
6 | Expression | Expression | Expression |
7 | Expression | Expression | Expression |
8 | Expression | Expression | Expression |
9 | Expression | Expression | Expression |
10 | Expression | Expression | Expression |
11 | Expression | Expression | Expression |
12 | Expression | Expression | Expression |
13 | Expression | Expression | Expression |
14 | Expression | Expression | Expression |
15 | Expression | Expression | Expression |
Exon-Intron | ||||||
---|---|---|---|---|---|---|
Position | Type | Gene coordinates | Chromosomal coordinates | Length | Sequence | Features |
1 | Exon | 1 - 70 | 38903596-38903665 | 70 | sequence | download |
1 | Intron | 71 - 1320 | 38902346-38903595 | 1250 | sequence | - |
2 | Exon | 1321 - 1710 | 38901956-38902345 | 390 | sequence | download |
2 | Intron | 1711 - 6380 | 38897286-38901955 | 4670 | sequence | - |
3 | Exon | 6381 - 6531 | 38897135-38897285 | 151 | sequence | download |
3 | Intron | 6532 - 8161 | 38895505-38897134 | 1630 | sequence | - |
4 | Exon | 8162 - 8261 | 38895405-38895504 | 100 | sequence | download |
4 | Intron | 8262 - 9087 | 38894579-38895404 | 826 | sequence | - |
5 | Exon | 9088 - 9221 | 38894445-38894578 | 134 | sequence | download |
5 | Intron | 9222 - 9510 | 38894156-38894444 | 289 | sequence | - |
6 | Exon | 9511 - 9576 | 38894090-38894155 | 66 | sequence | download |
6 | Intron | 9577 - 11723 | 38891943-38894089 | 2147 | sequence | - |
7 | Exon | 11724 - 11865 | 38891801-38891942 | 142 | sequence | download |
7 | Intron | 11866 - 12614 | 38891052-38891800 | 749 | sequence | - |
8 | Exon | 12615 - 12775 | 38890891-38891051 | 161 | sequence | download |
8 | Intron | 12776 - 12858 | 38890808-38890890 | 83 | sequence | - |
9 | Exon | 12859 - 13031 | 38890635-38890807 | 173 | sequence | download |
9 | Intron | 13032 - 13529 | 38890137-38890634 | 498 | sequence | - |
10 | Exon | 13530 - 13640 | 38890026-38890136 | 111 | sequence | download |
10 | Intron | 13641 - 13889 | 38889777-38890025 | 249 | sequence | - |
11 | Exon | 13890 - 13951 | 38889715-38889776 | 62 | sequence | download |
11 | Intron | 13952 - 15545 | 38888121-38889714 | 1594 | sequence | - |
12 | Exon | 15546 - 15605 | 38888061-38888120 | 60 | sequence | download |
12 | Intron | 15606 - 17224 | 38886442-38888060 | 1619 | sequence | - |
13 | Exon | 17225 - 17348 | 38886318-38886441 | 124 | sequence | download |
13 | Intron | 17349 - 19545 | 38884121-38886317 | 2197 | sequence | - |
14 | Exon | 19546 - 19788 | 38883878-38884120 | 243 | sequence | download |
14 | Intron | 19789 - 21220 | 38882446-38883877 | 1432 | sequence | - |
15 | Exon | 21221 - 24221 | 38879445-38882445 | 3001 | sequence | download |
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