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Previous gene FasterDB identifier: 2275 - DDX17 (P72) DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 Next gene
Gene Close
Symbol DDX17
Synonyms P72
Description DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
EnsEMBL link ENSG00000100201
Chromosome 22 - reverse strand
Chromosomal location
(UCSC link)		 38879445 - 38903665 (24221bp)
Sequence sequence
Associated transcripts AK303049 NM_006386 NM_001098504 BC029553 AK024985 AK074224 AB209595 AL713763 BC000595 CR456432 U59321 AF131750 NM_030881 NM_001098505
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 15 1928 BC029553
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
ASS1 14 -6 NM_006386
AK024985
AK074224
BC000595
U59321
NM_001098505
Intron retentions Close
 Identifier   Position   Transcript 
IR1 12 AL713763
IR2 13 AL713763
Exon deletions Close
 Identifier   Position   Transcript 
ED1 15 AB209595
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 38903665 AK303049
P2 2 1321 38902345 NM_006386
NM_001098504
P3 2 1353 38902313 AK024985
AK074224
P4 14 18700 38884966 AF131750
Protein prediction Close
 Transcript name   Sequence 
AK303049 sequence
NM_006386 sequence
NM_001098504 sequence
BC029553 sequence
AK024985 sequence
AK074224 sequence
AB209595 sequence
AL713763 sequence
BC000595 sequence
CR456432 sequence
U59321 sequence
AF131750 sequence
NM_030881 sequence
NM_001098505 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 13 17348 38886318 no AK303049 Full_length
PA2 15 21952 38881714 yes AK024985 Full_length
PA3 15 21952 38881714 yes AK074224 Full_length
PA4 15 24221 38879445 AATAAA yes NM_006386 Cdna
PA5 15 24221 38879445 AATAAA yes NM_001098504 Cdna
PA6 15 24221 38879445 AATAAA no AB209595 Cdna
PA7 15 24221 38879445 AATAAA yes NM_030881 Cdna
PA8 15 24221 38879445 AATAAA yes NM_001098505 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
ES1 2 AK303049
ES2 3 BC029553
ES3 4 BC029553
ES4 5 BC029553
ES5 6 BC029553
ES6 7 BC029553
ES7 8 BC029553
ES8 9 BC029553
ES9 10 BC029553
ES10 11 BC029553
ES11 12 BC029553
ES12 13 NM_006386
NM_001098504
BC029553
AK024985
AK074224
AB209595
BC000595
CR456432
U59321
ES13 14 BC029553
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
S1 5' (donor) 1 11.08 no CAGgtaagg
S2 5' (donor) 2 9.16 no AGGgtaagg
S3 3' (acceptor) 2 -13.86 no tcgtctccgccgtacgcagcGTT
S4 5' (donor) 3 9.09 no CCAgtaagt
S5 3' (acceptor) 3 6.69 no actaaaaattctgttcctagATT
S6 5' (donor) 4 10.16 no CACgtaagt
S7 3' (acceptor) 4 8.53 no ctttcattttttttcaatagTAT
S8 5' (donor) 5 9.45 no GCGgtatgt
S9 3' (acceptor) 5 7.5 no aaaataaaattctcttacagAAT
S10 5' (donor) 6 10.44 no ATCgtaagt
S11 3' (acceptor) 6 9.01 no attctttcccccctccacagTAT
S12 5' (donor) 7 7.96 no GAGgtaata
S13 3' (acceptor) 7 10.1 no tgtctttttgttggtttcagTGT
S14 5' (donor) 8 4.51 no AGGgtgtgt
S15 3' (acceptor) 8 11.4 no tcattggttttgttttacagGTG
S16 5' (donor) 9 4.72 no CAAgtatga
S17 3' (acceptor) 9 5.1 no agcctttccttttttgatagCCT
S18 5' (donor) 10 8.73 no TGGgtgagt
S19 3' (acceptor) 10 7.54 no attgttggtcatgttttcagGTT
S20 5' (donor) 11 11.01 no ATGgtaagt
S21 3' (acceptor) 11 5.67 no ggtcacttttcttctgatagTTG
S22 5' (donor) 12 4.07 no TAGgtttgt
S23 3' (acceptor) 12 8.17 no attattgtttgtttttacagAGT
S24 5' (donor) 13 -26.2 no TCAggccat
S25 3' (acceptor) 13 9.37 no tttgttttgttttttaacagAAG
S26 5' (donor) 14 10.45 no AGGgtaagt
S27 3' (acceptor) 14 -0.62 no actcatcattgacgtggaagATG
S28 5' (donor) 14 8.05 yes GGGgtaagg
S29 3' (acceptor) 15 9.32 no ttcttgtatcttcccattagGTG
S30 3' (acceptor) 15 2.23 yes ggtattcattcacaatgcagTTG
Conserved exons Close
 Gene identifier mouse   Position human  Position mouse 
16681 2 1
16681 3 2
16681 4 3
16681 5 4
16681 6 5
16681 7 6
16681 8 7
16681 9 8
16681 10 9
16681 11 10
16681 12 11
16681 14 12
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 1
2 2
14 1
 Transcription termination & last exon(s) 
13 1
15 7
 Exon skipping 
2 1
3 1
4 1
5 1
6 1
7 1
8 1
9 1
10 1
11 1
12 1
13 9
14 1
 Alternative 3' splice sites 
15 1
 Alternative 5' splice sites 
14 1
 Exon deletions 
15 1
 Intron retentions 
12 1
13 1
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR) Yes Yes
 
ESRP1/2 (ESRP) Yes
 
FUS Yes
 
HNRNPA1 Yes
 
HNRNPA2B1 Yes
 
HNRNPAB
 
HNRNPC Yes
 
HNRNPF/HNRNPH1 Yes Yes
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM Yes
 
HNRNPU Yes
 
MBNL
 
NOVA1
 
PTBP1/2 (PTB) Yes Yes
 
QKI
 
RBFOX2 (FOX2) Yes
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 (SF2ASF)
 
SRSF2 (SC35)
 
SRSF5 (SRP40)
 
TDP43
 
TIA1/TIAL1 Yes
 
TRA2A
 
TRA2B
 
YBX1 (YB1)
 
Expression Close
 Exon position   Tissues   Cell lines   Cancer cell lines 
1 Expression Expression Expression
2 Expression Expression Expression
3 Expression Expression Expression
4 Expression Expression Expression
5 Expression Expression Expression
6 Expression Expression Expression
7 Expression Expression Expression
8 Expression Expression Expression
9 Expression Expression Expression
10 Expression Expression Expression
11 Expression Expression Expression
12 Expression Expression Expression
13 Expression Expression Expression
14 Expression Expression Expression
15 Expression Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 70 38903596-38903665 70 sequence download
1 Intron 71 - 1320 38902346-38903595 1250 sequence -
2 Exon 1321 - 1710 38901956-38902345 390 sequence download
2 Intron 1711 - 6380 38897286-38901955 4670 sequence -
3 Exon 6381 - 6531 38897135-38897285 151 sequence download
3 Intron 6532 - 8161 38895505-38897134 1630 sequence -
4 Exon 8162 - 8261 38895405-38895504 100 sequence download
4 Intron 8262 - 9087 38894579-38895404 826 sequence -
5 Exon 9088 - 9221 38894445-38894578 134 sequence download
5 Intron 9222 - 9510 38894156-38894444 289 sequence -
6 Exon 9511 - 9576 38894090-38894155 66 sequence download
6 Intron 9577 - 11723 38891943-38894089 2147 sequence -
7 Exon 11724 - 11865 38891801-38891942 142 sequence download
7 Intron 11866 - 12614 38891052-38891800 749 sequence -
8 Exon 12615 - 12775 38890891-38891051 161 sequence download
8 Intron 12776 - 12858 38890808-38890890 83 sequence -
9 Exon 12859 - 13031 38890635-38890807 173 sequence download
9 Intron 13032 - 13529 38890137-38890634 498 sequence -
10 Exon 13530 - 13640 38890026-38890136 111 sequence download
10 Intron 13641 - 13889 38889777-38890025 249 sequence -
11 Exon 13890 - 13951 38889715-38889776 62 sequence download
11 Intron 13952 - 15545 38888121-38889714 1594 sequence -
12 Exon 15546 - 15605 38888061-38888120 60 sequence download
12 Intron 15606 - 17224 38886442-38888060 1619 sequence -
13 Exon 17225 - 17348 38886318-38886441 124 sequence download
13 Intron 17349 - 19545 38884121-38886317 2197 sequence -
14 Exon 19546 - 19788 38883878-38884120 243 sequence download
14 Intron 19789 - 21220 38882446-38883877 1432 sequence -
15 Exon 21221 - 24221 38879445-38882445 3001 sequence download
Close  5' untranslated regions 
 UTR 1   UTR 2   UTR 3   UTR 4   UTR 5 
 Supporting GenBank
accession identifers 		 AK303049
 NM_006386
NM_001098504
 AK024985
AK074224
 AL713763
NM_030881
NM_001098505
AB209595
BC000595
 AF131750
 Length  44 340 308 5641 1043
 Number of ATGs in frame  0 0 0 39 5
 Total number of ATGs  0 0 0 93 18
 Number of GTGs in frame  0 2 2 47 8
 Total number of GTGs  0 7 7 110 19
 Number of CTGs in frame  0 2 2 38 8
 Total number of CTGs  1 4 4 80 14
 Number of micro ORFs in frame  0 0 0 12 2
 Total number of micro ORFs  0 0 0 41 10
 GC percentage  55 68 68 44 40
 Number of pyrimidine tracks  0 2 2 43 8
Close 3' untranslated regions 
 UTR 1   UTR 2   UTR 3 
 Supporting GenBank
accession identifers 		 AK303049
 NM_006386
NM_001098504
NM_030881
NM_001098505
AF131750
AL713763
AK024985
AK074224
BC000595
CR456432
U59321
 AB209595
 Length  47 2495 2450
 Number of ATGs in frame  0 15 18
 Total number of ATGs  0 38 37
 Number of GTGs in frame  0 23 23
 Total number of GTGs  0 60 60
 Number of CTGs in frame  0 7 13
 Total number of CTGs  1 31 30
 GC percentage  47 39 39
 Number of pyrimidine tracks  1 28 28
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 hsa-miR-34c-5p 21882 - 21905 38881761 - 38881784 miranda
M2 hsa-miR-34a 21882 - 21905 38881761 - 38881784 miranda
M3 hsa-miR-449b 21885 - 21905 38881761 - 38881781 miranda
M4 hsa-miR-449a 21885 - 21905 38881761 - 38881781 miranda
M5 hsa-miR-34c-5p 21897 - 21905 38881761 - 38881769 targetscan
M6 hsa-miR-449a 21897 - 21905 38881761 - 38881769 targetscan
M7 hsa-miR-449b 21897 - 21905 38881761 - 38881769 targetscan
M8 hsa-miR-34a 21897 - 21905 38881761 - 38881769 targetscan
M9 hsa-miR-449a 21898 - 21904 38881762 - 38881768 pita
M10 hsa-miR-449b 21898 - 21904 38881762 - 38881768 pita
M11 hsa-miR-34a 21898 - 21904 38881762 - 38881768 pita
M12 hsa-miR-34c-5p 21898 - 21904 38881762 - 38881768 pita
M13 hsa-miR-490-3p 21903 - 21909 38881757 - 38881763 pita
M14 hsa-miR-298 21911 - 21917 38881749 - 38881755 pita
M15 hsa-miR-541 21915 - 21922 38881744 - 38881751 pita
M16 hsa-miR-654-5p 21916 - 21922 38881744 - 38881750 pita
M17 hsa-miR-1243 21928 - 21935 38881731 - 38881738 pita
Group 2
M1 hsa-miR-216b 21980 - 22002 38881664 - 38881686 miranda
M2 hsa-miR-145 21988 - 21995 38881671 - 38881678 targetscan
M3 hsa-miR-625 22008 - 22014 38881652 - 38881658 pita
M4 hsa-miR-1275 22009 - 22015 38881651 - 38881657 pita
M5 hsa-miR-539 22161 - 22185 38881481 - 38881505 miranda
M6 hsa-miR-539 22177 - 22184 38881482 - 38881489 pita
M7 hsa-miR-494 22229 - 22250 38881416 - 38881437 miranda
M8 hsa-miR-218 22625 - 22645 38881021 - 38881041 miranda
M9 hsa-miR-448 23321 - 23342 38880324 - 38880345 miranda
M10 hsa-miR-219-2-3p 23972 - 23978 38879688 - 38879694 pita
M11 hsa-miR-1300 23989 - 23995 38879671 - 38879677 pita
M12 hsa-miR-548p 24013 - 24019 38879647 - 38879653 pita
M13 hsa-miR-634 24048 - 24054 38879612 - 38879618 pita
M14 hsa-miR-516b 24055 - 24061 38879605 - 38879611 pita
M15 hsa-miR-1231 24057 - 24063 38879603 - 38879609 pita
M16 hsa-miR-1 24062 - 24069 38879597 - 38879604 targetscan
M17 hsa-miR-206 24062 - 24069 38879597 - 38879604 targetscan
M18 hsa-miR-613 24062 - 24069 38879597 - 38879604 targetscan
M19 hsa-miR-613 24063 - 24069 38879597 - 38879603 pita
M20 hsa-miR-1 24063 - 24069 38879597 - 38879603 pita
M21 hsa-miR-206 24063 - 24069 38879597 - 38879603 pita
M22 hsa-miR-1264 24078 - 24085 38879581 - 38879588 pita
M23 hsa-miR-26b 24081 - 24088 38879578 - 38879585 targetscan
M24 hsa-miR-1297 24081 - 24088 38879578 - 38879585 targetscan
M25 hsa-miR-26a 24081 - 24088 38879578 - 38879585 targetscan
M26 hsa-miR-1264 24088 - 24094 38879572 - 38879578 pita
M27 hsa-miR-377 24100 - 24106 38879560 - 38879566 pita
M28 hsa-miR-499-3p 24102 - 24109 38879557 - 38879564 pita
M29 hsa-miR-550 24110 - 24117 38879549 - 38879556 pita
M30 hsa-miR-802 24134 - 24140 38879526 - 38879532 pita
M31 hsa-miR-570 24180 - 24186 38879480 - 38879486 pita
M32 hsa-miR-1283 24189 - 24195 38879471 - 38879477 pita
M33 hsa-miR-875-5p 24193 - 24200 38879466 - 38879473 targetscan
M34 hsa-miR-421 24195 - 24218 38879448 - 38879471 miranda
M35 hsa-miR-505 24197 - 24219 38879447 - 38879469 miranda
M36 hsa-miR-421 24210 - 24217 38879449 - 38879456 targetscan
M37 hsa-miR-505 24211 - 24219 38879447 - 38879455 targetscan
M38 hsa-miR-421 24211 - 24217 38879449 - 38879455 pita
M39 hsa-miR-505 24212 - 24218 38879448 - 38879454 pita
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Catalytic EXONT:002349 RNA helicase, ATP-dependent, DEAD-box, conserved site 8 12701 12727
Binding EXONT:006084 DNA/RNA helicase, DEAD/DEAH box type, N-terminal 5,6,7,8,9 9132 12912
Binding EXONT:002349 RNA helicase, ATP-dependent, DEAD-box, conserved site 8 12701 12727
Localization EXONT:000064 Nuclear_localization_signal 3 6415 6459
Localization EXONT:000067 Nuclear_export_signal 3 6469 6513
Localization EXONT:000064 Nuclear_localization_signal 3,4 6520 8164
Localization EXONT:000064 Nuclear_localization_signal 6 9532 9552
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 14,15 19743 21432
PTM EXONT:000180 N-acetylated L-lysine 3 6415 6420
PTM EXONT:000192 N6-acetyl-L-lysine 3 6415 6420
PTM EXONT:000180 N-acetylated L-lysine 3 6454 6456
PTM EXONT:000192 N6-acetyl-L-lysine 3 6454 6456
PTM EXONT:001169 Sumoylated lysine 3 6478 6480
PTM EXONT:000161 O-phospho-L-serine 15 21229 21231
PTM EXONT:000162 O-phospho-L-threonine 15 21241 21243
PTM EXONT:000161 O-phospho-L-serine 15 21247 21252
PTM EXONT:000161 O-phospho-L-serine 15 21331 21333
PTM EXONT:000161 O-phospho-L-serine 15 21547 21549
PTM EXONT:000161 O-phospho-L-serine 15 21562 21564
Unclassified EXONT:002271 P-loop containing nucleoside triphosphate hydrolase 4,5,6,7,8,9,10,11,12,14 8189 19694
Unclassified EXONT:007086 RNA helicase, DEAD-box type, Q motif 4,5 8234 9146
Unclassified EXONT:004820 Helicase, superfamily 1/2, ATP-binding domain 5,6,7,8,9 9117 12996
Unclassified EXONT:002939 Helicase, C-terminal 9,10,11,12,13,14 13030 19754
Gene DDX17
Gene DDX17 Gene DDX17
Gene DDX17 Gene DDX17
Gene DDX17 Gene DDX17
Gene DDX17 Gene DDX17
Gene DDX17 Gene DDX17
Gene DDX17 Gene DDX17
Gene DDX17 Gene DDX17
Gene DDX17 Gene DDX17

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Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 1Exon 2Exon 3Exon 4Exon 5Exon 6Exon 7Exon 8Exon 9Exon 10Exon 11Exon 12Exon 13Exon 14Exon 15Extended region