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Previous gene FasterDB identifier: 14383 - CSTF2T (CstF-64T, DKFZp434C1013, KIAA0689) cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant Next gene
Gene Close
Symbol CSTF2T
Synonyms CstF-64T, DKFZp434C1013, KIAA0689
Description cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
EnsEMBL link ENSG00000177613
Chromosome 10 - reverse strand
Chromosomal location
(UCSC link)
53455247 - 53459355 (4109bp)
Sequence sequence
Associated transcripts NM_015235 AK314318 AL136747 AK222574 AY130299 BC028239 AB014589 BC017185
Alternative 3' splice site (acceptor) Close
 Identifier   Position   Distance (bp)   Transcript 
Alternative 5' splice sites (donor) Close
 Identifier   Position   Distance (bp)   Transcript 
Intron retentions Close
 Identifier   Position   Transcript 
Exon deletions Close
 Identifier   Position   Transcript 
No data
Transcription start sites Close
 Identifier   Position   Gene coordinates   Chromosomal coordinates   Transcript 
P1 1 1 53459355 NM_015235
AK314318
Protein prediction Close
 Transcript name   Sequence 
NM_015235 sequence
AK314318 sequence
AL136747 sequence
AK222574 sequence
AY130299 sequence
BC028239 sequence
AB014589 sequence
BC017185 sequence
Polyadenylation Close
 Identifier   Position   Gene coordinates of cleavage site   Chromosomal coordinates of cleavage site   Pattern   PolyA tail   Accession number   Type 
PA1 1 1897 53457459 no AK314318 Full_length
PA2 1 2344 53457012 AATAAA no AW510805 3prime_est
PA3 1 4109 53455247 AATAAA yes NM_015235 Cdna
PA4 1 4109 53455247 AATAAA no AB014589 Cdna

More polyadenylation sites ...

Exon skipping Close
 Identifier   Position   Transcript 
No data
Splice site strength Close
 Identifier   Site   Exon   Strength   Alternative   Sequence 
No data
Conserved exons Close
 Gene identifier mouse   Position human  Position mouse 
1920 1 1
Report Close
 Exon   Number of supporting transcripts 
 Transcription initiation & first exon(s) 
1 1
 Transcription termination & last exon(s) 
1 4
Splicing factors Close
 Splicing factor   Exon array   CLIP data   Exon position 
CELF1 (CUG-BP)
 
DAZAP1
 
ELAVL1 (HuR) Yes Yes
 
ESRP1/2 (ESRP) Yes
 
FUS Yes
 
HNRNPA1 Yes
 
HNRNPA2B1 Yes
 
HNRNPAB
 
HNRNPC Yes
 
HNRNPF/HNRNPH1 Yes Yes
 
HNRNPL Yes
 
HNRNPL_2
 
HNRNPM Yes
 
HNRNPU Yes
 
MBNL
 
NOVA1
 
PTBP1/2 (PTB) Yes Yes
 
QKI
 
RBFOX2 (FOX2) Yes
 
RBM4 Yes
 
SFRS3 (SRP20)
 
SFRS6 (SRP55)
 
SFRS7 (9G8)
 
SRSF1 (SF2ASF)
 
SRSF2 (SC35)
 
SRSF5 (SRP40)
 
TDP43
 
TIA1/TIAL1 Yes
 
TRA2A
 
TRA2B
 
YBX1 (YB1)
 
Expression Close
 Exon position   Tissues   Cell lines   Cancer cell lines 
1 Expression Expression Expression
Exon-Intron Close
 Position   Type   Gene coordinates   Chromosomal coordinates   Length   Sequence   Features 
1 Exon 1 - 4109 53455247-53459355 4109 sequence download
Close  5' untranslated regions 
 UTR 1 
 Supporting GenBank
accession identifers 
NM_015235
AK314318
AL136747
AK222574
AY130299
BC028239
 Length  46
 Number of ATGs in frame  0
 Total number of ATGs  0
 Number of GTGs in frame  0
 Total number of GTGs  2
 Number of CTGs in frame  0
 Total number of CTGs  0
 Number of micro ORFs in frame  0
 Total number of micro ORFs  0
 GC percentage  57
 Number of pyrimidine tracks  0
Close 3' untranslated regions 
 UTR 1   UTR 2 
 Supporting GenBank
accession identifers 
AB014589
AL136747
AY130299
BC028239
BC017185
AK222574
NM_015235
 Length  2214 2212
 Number of ATGs in frame  15 17
 Total number of ATGs  38 38
 Number of GTGs in frame  15 11
 Total number of GTGs  41 41
 Number of CTGs in frame  3 6
 Total number of CTGs  18 18
 GC percentage  34 34
 Number of pyrimidine tracks  13 13
miRNAs Close
 Identifier    Name    Gene coordinates   Chromosomal coordinates   Prediction algorithm 
Group 1
M1 hsa-miR-129-5p 1958 - 1965 53457391 - 53457398 targetscan
M2 hsa-miR-491-5p 1964 - 1986 53457370 - 53457392 miranda
M3 hsa-miR-491-5p 1978 - 1986 53457370 - 53457378 targetscan
Group 2
M1 hsa-miR-299-5p 2356 - 2363 53456993 - 53457000 pita
M2 hsa-miR-522 2360 - 2367 53456989 - 53456996 pita
M3 hsa-miR-148a 2501 - 2523 53456833 - 53456855 miranda
M4 hsa-miR-377 2590 - 2612 53456744 - 53456766 miranda
M5 hsa-miR-490-3p 2612 - 2634 53456722 - 53456744 miranda
M6 hsa-miR-146a 2645 - 2667 53456689 - 53456711 miranda
M7 hsa-miR-146b-5p 2645 - 2667 53456689 - 53456711 miranda
M8 hsa-miR-539 2664 - 2685 53456671 - 53456692 miranda
M9 hsa-miR-381 2881 - 2903 53456453 - 53456475 miranda
M10 hsa-miR-300 2881 - 2903 53456453 - 53456475 miranda
M11 hsa-miR-539 3097 - 3118 53456238 - 53456259 miranda
M12 hsa-miR-590-3p 3739 - 3761 53455595 - 53455617 miranda
M13 hsa-miR-196b 3833 - 3854 53455502 - 53455523 miranda
M14 hsa-miR-196a 3833 - 3854 53455502 - 53455523 miranda
Protein features Close
 Category   Feature identifier   Feature name   Exons   Start on gene   End on gene 
Binding EXONT:006334 Nucleotide-binding, alpha-beta plait 1 68 343
Binding EXONT:002265 RNA recognition motif domain 1 92 328
Localization EXONT:000067 Nuclear_export_signal 1 458 502
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 1 47 79
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 1 326 442
Structure EXONT:000074 Intrinsically_unstructured_polypeptide_region 1 647 1774
Structure EXONT:000024 Compositionally_biased_region_of_peptide 1 824 1714
Structure EXONT:000027 Polypeptide_repeat 1 1298 1432
Structure EXONT:000027 Polypeptide_repeat 1 1559 1693
PTM EXONT:000161 O-phospho-L-serine 1 383 385
PTM EXONT:000797 Ubiquitinylated lysine 1 488 490
PTM EXONT:000797 Ubiquitinylated lysine 1 611 613
PTM EXONT:000797 Ubiquitinylated lysine 1 626 628
PTM EXONT:000162 O-phospho-L-threonine 1 638 640
PTM EXONT:000161 O-phospho-L-serine 1 659 661
PTM EXONT:000240 Monomethylated L-arginine 1 977 979
PTM EXONT:000162 O-phospho-L-threonine 1 1004 1006
PTM EXONT:000238 Dimethylated L-arginine 1 1025 1027
PTM EXONT:000240 Monomethylated L-arginine 1 1058 1060
PTM EXONT:000240 Monomethylated L-arginine 1 1100 1102
PTM EXONT:000240 Monomethylated L-arginine 1 1232 1234
PTM EXONT:000240 Monomethylated L-arginine 1 1427 1429
PTM EXONT:000161 O-phospho-L-serine 1 1715 1717
PTM EXONT:000161 O-phospho-L-serine 1 1724 1729
PTM EXONT:000161 O-phospho-L-serine 1 1733 1735
PTM EXONT:000161 O-phospho-L-serine 1 1745 1747
PTM EXONT:000161 O-phospho-L-serine 1 1847 1849
Unclassified EXONT:010713 Cleavage stimulation factor subunit 2, hinge domain 1 380 622
Unclassified EXONT:010927 Transcription termination and cleavage factor C-terminal domain 1 1754 1885
Gene CSTF2T
Gene CSTF2T Gene CSTF2T
Gene CSTF2T Gene CSTF2T
Gene CSTF2T Gene CSTF2T
Gene CSTF2T Gene CSTF2T
Gene CSTF2T Gene CSTF2T
Gene CSTF2T Gene CSTF2T
Gene CSTF2T Gene CSTF2T
Gene CSTF2T Gene CSTF2T

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Exon 1Extended region